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Search of human proteins with 239747322
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747322 PREDICTED: hypothetical protein XP_002346421 [Homo
sapiens]
(347 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752797 PREDICTED: hypothetical protein [Homo sapiens] 717 0.0
gi|239747322 PREDICTED: hypothetical protein XP_002346421 [Homo ... 717 0.0
gi|239741144 PREDICTED: hypothetical protein XP_002342119 [Homo ... 715 0.0
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 53 5e-07
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 50 4e-06
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 50 4e-06
gi|239756833 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo ... 47 2e-05
gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo ... 47 2e-05
gi|150170670 piccolo isoform 2 [Homo sapiens] 45 1e-04
gi|150378539 piccolo isoform 1 [Homo sapiens] 45 1e-04
gi|238859653 pleckstrin homology domain containing family A memb... 44 2e-04
gi|238859651 pleckstrin homology domain containing family A memb... 44 2e-04
gi|33286446 opioid growth factor receptor [Homo sapiens] 44 2e-04
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 44 2e-04
gi|151301137 AT-hook transcription factor [Homo sapiens] 44 3e-04
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 43 5e-04
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 43 5e-04
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 42 8e-04
gi|110815800 WD repeat domain 32 [Homo sapiens] 41 0.001
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 40 0.002
gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo ... 40 0.003
gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo ... 40 0.003
gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo ... 40 0.003
gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens] 40 0.003
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 39 0.007
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 39 0.007
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 39 0.009
>gi|239752797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 347
Score = 717 bits (1851), Expect = 0.0
Identities = 347/347 (100%), Positives = 347/347 (100%)
Query: 1 MRPTFDGSAAHQMRVGKVEGRIQAEVGLYDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM 60
MRPTFDGSAAHQMRVGKVEGRIQAEVGLYDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM
Sbjct: 1 MRPTFDGSAAHQMRVGKVEGRIQAEVGLYDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM 60
Query: 61 VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV 120
VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV
Sbjct: 61 VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV 120
Query: 121 GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL 180
GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL
Sbjct: 121 GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL 180
Query: 181 PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG 240
PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG
Sbjct: 181 PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG 240
Query: 241 LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG 300
LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG
Sbjct: 241 LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG 300
Query: 301 RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ 347
RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ
Sbjct: 301 RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ 347
>gi|239747322 PREDICTED: hypothetical protein XP_002346421 [Homo
sapiens]
Length = 347
Score = 717 bits (1851), Expect = 0.0
Identities = 347/347 (100%), Positives = 347/347 (100%)
Query: 1 MRPTFDGSAAHQMRVGKVEGRIQAEVGLYDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM 60
MRPTFDGSAAHQMRVGKVEGRIQAEVGLYDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM
Sbjct: 1 MRPTFDGSAAHQMRVGKVEGRIQAEVGLYDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM 60
Query: 61 VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV 120
VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV
Sbjct: 61 VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV 120
Query: 121 GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL 180
GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL
Sbjct: 121 GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL 180
Query: 181 PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG 240
PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG
Sbjct: 181 PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG 240
Query: 241 LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG 300
LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG
Sbjct: 241 LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG 300
Query: 301 RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ 347
RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ
Sbjct: 301 RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ 347
>gi|239741144 PREDICTED: hypothetical protein XP_002342119 [Homo
sapiens]
Length = 347
Score = 715 bits (1846), Expect = 0.0
Identities = 346/347 (99%), Positives = 347/347 (100%)
Query: 1 MRPTFDGSAAHQMRVGKVEGRIQAEVGLYDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM 60
MRPTFDGSAAHQMRVGKVEGRIQAEVGL+DAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM
Sbjct: 1 MRPTFDGSAAHQMRVGKVEGRIQAEVGLHDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM 60
Query: 61 VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV 120
VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV
Sbjct: 61 VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV 120
Query: 121 GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL 180
GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL
Sbjct: 121 GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL 180
Query: 181 PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG 240
PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG
Sbjct: 181 PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG 240
Query: 241 LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG 300
LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG
Sbjct: 241 LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG 300
Query: 301 RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ 347
RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ
Sbjct: 301 RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ 347
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 52.8 bits (125), Expect = 5e-07
Identities = 52/155 (33%), Positives = 55/155 (35%), Gaps = 21/155 (13%)
Query: 189 GAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG-LDLGLGG 247
GAA + G PGA P H HP P P P + HH P LG G G
Sbjct: 269 GAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPG 328
Query: 248 SGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGR-----SPTFQAGRR 302
SG GQ RP HP P P P R P G P G R
Sbjct: 329 SG------GQP--------PPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMR 374
Query: 303 MPTRLAPPLFLSVSP-DPPTGPQRIPARQPEPRLR 336
P L PP + P PP G QR P P P R
Sbjct: 375 GPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPR 409
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 49.7 bits (117), Expect = 4e-06
Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 27/199 (13%)
Query: 137 GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKG 196
GG PE ++ + + ++Q A G A G +A +G L +++G AA+ A
Sbjct: 376 GGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMG--LGKDMGAQYAAASPAWA 433
Query: 197 AEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCG 256
A P + PGP R P+ ++R G+G + H Q
Sbjct: 434 A--AQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQL-------YGMGSNPHSQPQ-- 482
Query: 257 QQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLF--LS 314
S P G S+ PP P+ YP GR+P AG + P + PP +
Sbjct: 483 --------QSSPYPGG--SYGPPGPQRYPIG--IQGRTPGAMAGMQYPQQQMPPQYGQQG 530
Query: 315 VSPDPPTGPQRIPARQPEP 333
VS G Q ++QP+P
Sbjct: 531 VSGYCQQGQQPYYSQQPQP 549
Score = 35.8 bits (81), Expect = 0.058
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 137 GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGV-QLPREVGGTL------- 188
GG A AG+ A A A GGG G G + GV PR+ GG +
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGG 327
Query: 189 GAAAQAKGAEG--CPGAQRPFHAQDHP 213
GAA+ +K A G G QR HP
Sbjct: 328 GAASLSKAAAGSAAGGFQRFAGQNQHP 354
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 49.7 bits (117), Expect = 4e-06
Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 27/199 (13%)
Query: 137 GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKG 196
GG PE ++ + + ++Q A G A G +A +G L +++G AA+ A
Sbjct: 376 GGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMG--LGKDMGAQYAAASPAWA 433
Query: 197 AEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCG 256
A P + PGP R P+ ++R G+G + H Q
Sbjct: 434 A--AQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQL-------YGMGSNPHSQPQ-- 482
Query: 257 QQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLF--LS 314
S P G S+ PP P+ YP GR+P AG + P + PP +
Sbjct: 483 --------QSSPYPGG--SYGPPGPQRYPIG--IQGRTPGAMAGMQYPQQQMPPQYGQQG 530
Query: 315 VSPDPPTGPQRIPARQPEP 333
VS G Q ++QP+P
Sbjct: 531 VSGYCQQGQQPYYSQQPQP 549
Score = 35.8 bits (81), Expect = 0.058
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 137 GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGV-QLPREVGGTL------- 188
GG A AG+ A A A GGG G G + GV PR+ GG +
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGG 327
Query: 189 GAAAQAKGAEG--CPGAQRPFHAQDHP 213
GAA+ +K A G G QR HP
Sbjct: 328 GAASLSKAAAGSAAGGFQRFAGQNQHP 354
>gi|239756833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 47.4 bits (111), Expect = 2e-05
Identities = 71/221 (32%), Positives = 85/221 (38%), Gaps = 48/221 (21%)
Query: 110 HLEVGDLQVVVGAPLAELQLHLFAERVG----GRRPEAAAQAGSATQKAPEEAQVAQGGG 165
HLE +QV+VG E+ L RVG G+RP AA QAG + Q A EE Q+A
Sbjct: 69 HLEQRVVQVLVGQAALEVTQQL-PRRVGHLEGGQRPLAAPQAGGSLQDAAEEPQLA---- 123
Query: 166 ARGLGRAGGPVGVQLPREVGGTLGAAAQAKG-AEGCPGAQRPFHAQDHPGPVPARVGCGP 224
GP+ +G G A A G AEG AQ P P
Sbjct: 124 --------GPLVCAAAVGIGLGRGRGAAAVGVAEGLAVAQEPVQ---------------P 160
Query: 225 LGEEQIRRHHAPSCLGLDLGLGGS-----GHDSQQCGQQLQRAYRHRSLRPNGTASHP-- 277
Q+ R AP+ L L L S G Q G++ A LRP P
Sbjct: 161 QRRLQVARALAPA---LSLVLLQSVPVRRGQRHQVLGREAPEAVL-LVLRPGAAQQQPQQ 216
Query: 278 PPRPESYPRRRPAPGRSPTFQAGRR----MPTRLAPPLFLS 314
PPR S+ RR GR+ P R A PL LS
Sbjct: 217 PPRHPSHARRAAGSPELSWLPRGRKGTGPGPGRAARPLGLS 257
>gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo
sapiens]
Length = 346
Score = 47.4 bits (111), Expect = 2e-05
Identities = 71/221 (32%), Positives = 85/221 (38%), Gaps = 48/221 (21%)
Query: 110 HLEVGDLQVVVGAPLAELQLHLFAERVG----GRRPEAAAQAGSATQKAPEEAQVAQGGG 165
HLE +QV+VG E+ L RVG G+RP AA QAG + Q A EE Q+A
Sbjct: 134 HLEQRVVQVLVGQAALEVTQQL-PRRVGHLEGGQRPLAAPQAGGSLQDAAEEPQLA---- 188
Query: 166 ARGLGRAGGPVGVQLPREVGGTLGAAAQAKG-AEGCPGAQRPFHAQDHPGPVPARVGCGP 224
GP+ +G G A A G AEG AQ P P
Sbjct: 189 --------GPLVCAAAVGIGLGRGRGAAAVGVAEGLAVAQEPVQ---------------P 225
Query: 225 LGEEQIRRHHAPSCLGLDLGLGGS-----GHDSQQCGQQLQRAYRHRSLRPNGTASHP-- 277
Q+ R AP+ L L L S G Q G++ A LRP P
Sbjct: 226 QRRLQVARALAPA---LSLVLLQSVPVRRGQRHQVLGREAPEAVL-LVLRPGAAQQQPQQ 281
Query: 278 PPRPESYPRRRPAPGRSPTFQAGRR----MPTRLAPPLFLS 314
PPR S+ RR GR+ P R A PL LS
Sbjct: 282 PPRHPSHARRAAGSPELSWLPRGRKGTGPGPGRAARPLGLS 322
>gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo
sapiens]
Length = 346
Score = 47.4 bits (111), Expect = 2e-05
Identities = 71/221 (32%), Positives = 85/221 (38%), Gaps = 48/221 (21%)
Query: 110 HLEVGDLQVVVGAPLAELQLHLFAERVG----GRRPEAAAQAGSATQKAPEEAQVAQGGG 165
HLE +QV+VG E+ L RVG G+RP AA QAG + Q A EE Q+A
Sbjct: 134 HLEQRVVQVLVGQAALEVTQQL-PRRVGHLEGGQRPLAAPQAGGSLQDAAEEPQLA---- 188
Query: 166 ARGLGRAGGPVGVQLPREVGGTLGAAAQAKG-AEGCPGAQRPFHAQDHPGPVPARVGCGP 224
GP+ +G G A A G AEG AQ P P
Sbjct: 189 --------GPLVCAAAVGIGLGRGRGAAAVGVAEGLAVAQEPVQ---------------P 225
Query: 225 LGEEQIRRHHAPSCLGLDLGLGGS-----GHDSQQCGQQLQRAYRHRSLRPNGTASHP-- 277
Q+ R AP+ L L L S G Q G++ A LRP P
Sbjct: 226 QRRLQVARALAPA---LSLVLLQSVPVRRGQRHQVLGREAPEAVL-LVLRPGAAQQQPQQ 281
Query: 278 PPRPESYPRRRPAPGRSPTFQAGRR----MPTRLAPPLFLS 314
PPR S+ RR GR+ P R A PL LS
Sbjct: 282 PPRHPSHARRAAGSPELSWLPRGRKGTGPGPGRAARPLGLS 322
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 44.7 bits (104), Expect = 1e-04
Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 199 GCPGAQRPFHAQDHPGPV--PARVG--CGPLGEE--QIRRHHAP--SCLGLDLGLGGSGH 250
G P AQ+P H + PGP PA+ PL ++ ++ P + LG +
Sbjct: 312 GKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKP 371
Query: 251 DSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPP 310
+QQ G + + S +P A PP P ++P P + PT Q G P P
Sbjct: 372 PAQQTGSE-----KPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPG 426
Query: 311 LFLSVSPDPPTGPQRIPARQPEP 333
L SP GP + P +QP P
Sbjct: 427 L---QSPAKAPGPTKTPVQQPGP 446
Score = 35.4 bits (80), Expect = 0.076
Identities = 50/206 (24%), Positives = 73/206 (35%), Gaps = 38/206 (18%)
Query: 140 RPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEG 199
+P A +Q P + G + L + G V + P + GT AQ G
Sbjct: 313 KPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTV--KPPVQPPGTTKPPAQPLGPAK 370
Query: 200 CP----GAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQC 255
P G+++P Q P + G G +Q G + +QQ
Sbjct: 371 PPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQP---------------GPAKPPTQQV 415
Query: 256 GQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG-------RRMPTRLA 308
G A + P + P P P ++P PG+ P QAG + PT+
Sbjct: 416 GTPKPLAQQ-----PGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTK-- 468
Query: 309 PPLFLSVSPDPP---TGPQRIPARQP 331
PP L PP GP + P +QP
Sbjct: 469 PPSQLPGPAKPPPQQPGPAKPPPQQP 494
Score = 29.6 bits (65), Expect = 4.2
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 273 TASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAP--------PLFLSVSPDPPTGPQ 324
T PP + + + +P P + P +G P P P + P P GP
Sbjct: 310 TPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPA 369
Query: 325 RIPARQ 330
+ PA+Q
Sbjct: 370 KPPAQQ 375
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 44.7 bits (104), Expect = 1e-04
Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 199 GCPGAQRPFHAQDHPGPV--PARVG--CGPLGEE--QIRRHHAP--SCLGLDLGLGGSGH 250
G P AQ+P H + PGP PA+ PL ++ ++ P + LG +
Sbjct: 312 GKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKP 371
Query: 251 DSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPP 310
+QQ G + + S +P A PP P ++P P + PT Q G P P
Sbjct: 372 PAQQTGSE-----KPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPG 426
Query: 311 LFLSVSPDPPTGPQRIPARQPEP 333
L SP GP + P +QP P
Sbjct: 427 L---QSPAKAPGPTKTPVQQPGP 446
Score = 35.4 bits (80), Expect = 0.076
Identities = 50/206 (24%), Positives = 73/206 (35%), Gaps = 38/206 (18%)
Query: 140 RPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEG 199
+P A +Q P + G + L + G V + P + GT AQ G
Sbjct: 313 KPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTV--KPPVQPPGTTKPPAQPLGPAK 370
Query: 200 CP----GAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQC 255
P G+++P Q P + G G +Q G + +QQ
Sbjct: 371 PPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQP---------------GPAKPPTQQV 415
Query: 256 GQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG-------RRMPTRLA 308
G A + P + P P P ++P PG+ P QAG + PT+
Sbjct: 416 GTPKPLAQQ-----PGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTK-- 468
Query: 309 PPLFLSVSPDPP---TGPQRIPARQP 331
PP L PP GP + P +QP
Sbjct: 469 PPSQLPGPAKPPPQQPGPAKPPPQQP 494
Score = 29.6 bits (65), Expect = 4.2
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 273 TASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAP--------PLFLSVSPDPPTGPQ 324
T PP + + + +P P + P +G P P P + P P GP
Sbjct: 310 TPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPA 369
Query: 325 RIPARQ 330
+ PA+Q
Sbjct: 370 KPPAQQ 375
>gi|238859653 pleckstrin homology domain containing family A member
4 isoform 2 [Homo sapiens]
Length = 583
Score = 43.9 bits (102), Expect = 2e-04
Identities = 54/164 (32%), Positives = 64/164 (39%), Gaps = 17/164 (10%)
Query: 183 EVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGP---LGEEQIRRHHAPSCL 239
++ G L A +A AEG Q A+ PG P G P GEE R +P
Sbjct: 140 DLRGWLRALGRASRAEGDDYGQPRSPARPQPGEGPGGPGGPPEVSRGEEG-RISESPEVT 198
Query: 240 GLDLGLGG------SGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGR 293
L G G S G Q++RA P PP P S PR R AP R
Sbjct: 199 RLSRGRGRPRLLTPSPTTDLHSGLQMRRARSPDLFTPLSR----PPSPLSLPRPRSAPAR 254
Query: 294 SPTFQAG-RRMPTRLAPPLF-LSVSPDPPTGPQR-IPARQPEPR 334
P +G P R PL + V P GPQR +R P PR
Sbjct: 255 RPPAPSGDTAPPARPHTPLSRIDVRPPLDWGPQRQTLSRPPTPR 298
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 43.9 bits (102), Expect = 2e-04
Identities = 54/164 (32%), Positives = 64/164 (39%), Gaps = 17/164 (10%)
Query: 183 EVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGP---LGEEQIRRHHAPSCL 239
++ G L A +A AEG Q A+ PG P G P GEE R +P
Sbjct: 140 DLRGWLRALGRASRAEGDDYGQPRSPARPQPGEGPGGPGGPPEVSRGEEG-RISESPEVT 198
Query: 240 GLDLGLGG------SGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGR 293
L G G S G Q++RA P PP P S PR R AP R
Sbjct: 199 RLSRGRGRPRLLTPSPTTDLHSGLQMRRARSPDLFTPLSR----PPSPLSLPRPRSAPAR 254
Query: 294 SPTFQAG-RRMPTRLAPPLF-LSVSPDPPTGPQR-IPARQPEPR 334
P +G P R PL + V P GPQR +R P PR
Sbjct: 255 RPPAPSGDTAPPARPHTPLSRIDVRPPLDWGPQRQTLSRPPTPR 298
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 43.9 bits (102), Expect = 2e-04
Identities = 62/235 (26%), Positives = 81/235 (34%), Gaps = 46/235 (19%)
Query: 121 GAPLAELQLHLFAERVGGRRPEAAAQ------AGSATQKAPEEAQVAQG---------GG 165
G L++ L + VGG+ P A Q K + +V +G GG
Sbjct: 416 GCALSQGSLRTGTQEVGGQDPGEAVQPCRQPLGARVADKVRKRRKVDEGAGDSAAVASGG 475
Query: 166 ARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPL 225
A+ L AG P P+ G +G G P P + PGP PA GP
Sbjct: 476 AQTLALAGSPAPSGHPKAGHSENGVEEDTEGRTG-PKEGTPGSPSETPGPSPA----GPA 530
Query: 226 GEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYP 285
G+E +PS G +G + + P+ T P PRP
Sbjct: 531 GDEPAE---SPSETPGPRPAGPAGDEPAES--------------PSET---PGPRPAGPA 570
Query: 286 RRRPAPGRSPTFQAGRRMPTRLAPPLFLSVSPDP-PTG-----PQRIPARQPEPR 334
PA S T PTR P S +P P P G P P+ P PR
Sbjct: 571 GDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGPR 625
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 43.9 bits (102), Expect = 2e-04
Identities = 39/118 (33%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 226 GEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYP 285
GE RR H+PS S ++ + R R RS P T P P P
Sbjct: 515 GEVGRRRRHSPS-------RSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPP 567
Query: 286 RRRPAP-----GRSPTFQAGRRMPT--RLAPPLFLSVSPDPPTGPQRIPARQPEPRLR 336
RRR P R+P+ RR P+ R +PP+ SP PP P+R A P P R
Sbjct: 568 RRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPP--PKRRTASPPPPPKR 623
Score = 31.2 bits (69), Expect = 1.4
Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 19/86 (22%)
Query: 264 RHRSLRPNGTASHPPPR------PESY-PRRRPAPGRSPTFQAGRRMPTRLAPPLFLSVS 316
+ RS + + SH PR SY PRRRP+P R P+ RR P R P
Sbjct: 283 KSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPS--PRRRTPPRRMP------- 333
Query: 317 PDPPTGPQRIPARQPEPRLRAQALLS 342
P P R P R+ R R+ A LS
Sbjct: 334 PPPRHRRSRSPVRR---RRRSSASLS 356
Score = 28.5 bits (62), Expect = 9.3
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 266 RSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLSVSPDPPTGPQR 325
RS +PN S P PRP + P+ +P P + P R SP P T P R
Sbjct: 674 RSPQPNKRHS-PSPRPRA-PQTSSSP--PPVRRGASSSPQRRQ-------SPSPSTRPIR 722
Query: 326 IPARQPEPR 334
+R PEP+
Sbjct: 723 RVSRTPEPK 731
>gi|151301137 AT-hook transcription factor [Homo sapiens]
Length = 1439
Score = 43.5 bits (101), Expect = 3e-04
Identities = 53/206 (25%), Positives = 68/206 (33%), Gaps = 24/206 (11%)
Query: 149 SATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGG------TLGAAAQAKGAEGCPG 202
S K +++ A G RG+G AG P V + G + A + G CP
Sbjct: 1184 SEKSKTTKDSPQAARDGKRGVGSAGWPDRVTFRGQYTGHEYHVLSPKAVPKGNGTVSCPH 1243
Query: 203 AQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQRA 262
RP QD G V PLG P C + G S G +
Sbjct: 1244 C-RPIRTQDAGGAVTG----DPLGPPPADTLQCPLCGQVGSPPEADGPGSATSGAEKATT 1298
Query: 263 YRHRSLRPN--------GTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLS 314
R S P+ G++ PPP PAP P F +P PP +
Sbjct: 1299 RRKASSTPSPKQRSKQAGSSPRPPPGLWYLATAPPAPA-PPAFAYISSVPIMPYPPAAVY 1357
Query: 315 VSPDPPTGPQRI----PARQPEPRLR 336
+P PT Q P P P R
Sbjct: 1358 YAPAGPTSAQPAAKWPPTASPPPARR 1383
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 42.7 bits (99), Expect = 5e-04
Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 25/202 (12%)
Query: 143 AAAQAGSATQKAPEEAQV--AQGGGARGLGRAGGP------VGVQLPREVGGTLGAAAQA 194
AAA +G A Q++ + GGG + L R P +G P+ GGT + Q
Sbjct: 346 AAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQ- 404
Query: 195 KGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQ- 253
+G P + H +PG P G + +R+ +GG + Q
Sbjct: 405 ---QGPPSGPQQGHG--YPGQ--------PYGSQTPQRYPMTMQGRAQSAMGGLSYTQQI 451
Query: 254 -QCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLF 312
GQQ Y + P P P+ + P + P ++P Q + + PP
Sbjct: 452 PPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQL 511
Query: 313 LSVSPDPPTGPQRIPARQ-PEP 333
S P P + P +Q P P
Sbjct: 512 QSSQPPYSQQPSQPPHQQSPAP 533
Score = 38.9 bits (89), Expect = 0.007
Identities = 46/185 (24%), Positives = 65/185 (35%), Gaps = 24/185 (12%)
Query: 141 PEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGC 200
P ++A A S++ ++ A GGG G P P + L + + A+G +G
Sbjct: 253 PSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPT-LNQLLTSPSSARGYQGY 311
Query: 201 PGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQ 260
PG GP G GP A C G + S G Q
Sbjct: 312 PGGDY------SGGPQDGGAGKGP-------ADMASQCWGAAAAAAAAAAAS---GGAQQ 355
Query: 261 RAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLSVSPDPP 320
R++ H + P + P R P P SP Q G+ P S PP
Sbjct: 356 RSH-HAPMSPGSSGGGGQPL-----ARTPQPS-SPMDQMGKMRPQPYGGTNPYSQQQGPP 408
Query: 321 TGPQR 325
+GPQ+
Sbjct: 409 SGPQQ 413
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 42.7 bits (99), Expect = 5e-04
Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 25/202 (12%)
Query: 143 AAAQAGSATQKAPEEAQV--AQGGGARGLGRAGGP------VGVQLPREVGGTLGAAAQA 194
AAA +G A Q++ + GGG + L R P +G P+ GGT + Q
Sbjct: 346 AAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQ- 404
Query: 195 KGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQ- 253
+G P + H +PG P G + +R+ +GG + Q
Sbjct: 405 ---QGPPSGPQQGHG--YPGQ--------PYGSQTPQRYPMTMQGRAQSAMGGLSYTQQI 451
Query: 254 -QCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLF 312
GQQ Y + P P P+ + P + P ++P Q + + PP
Sbjct: 452 PPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQL 511
Query: 313 LSVSPDPPTGPQRIPARQ-PEP 333
S P P + P +Q P P
Sbjct: 512 QSSQPPYSQQPSQPPHQQSPAP 533
Score = 38.9 bits (89), Expect = 0.007
Identities = 46/185 (24%), Positives = 65/185 (35%), Gaps = 24/185 (12%)
Query: 141 PEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGC 200
P ++A A S++ ++ A GGG G P P + L + + A+G +G
Sbjct: 253 PSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPT-LNQLLTSPSSARGYQGY 311
Query: 201 PGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQ 260
PG GP G GP A C G + S G Q
Sbjct: 312 PGGDY------SGGPQDGGAGKGP-------ADMASQCWGAAAAAAAAAAAS---GGAQQ 355
Query: 261 RAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLSVSPDPP 320
R++ H + P + P R P P SP Q G+ P S PP
Sbjct: 356 RSH-HAPMSPGSSGGGGQPL-----ARTPQPS-SPMDQMGKMRPQPYGGTNPYSQQQGPP 408
Query: 321 TGPQR 325
+GPQ+
Sbjct: 409 SGPQQ 413
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 42.4 bits (98), Expect = 6e-04
Identities = 59/225 (26%), Positives = 81/225 (36%), Gaps = 47/225 (20%)
Query: 137 GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREV-----GGTLGAA 191
GGR A A+ + P + + +GLG + G G P GG GA
Sbjct: 170 GGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGAR 229
Query: 192 AQAKGAE--GCPGAQRPFHAQDHPGPVPARVGCGPL-----GEEQIRRHHAPSCLGLDLG 244
AQ +G+E CPG+ P P GC G Q +R AP
Sbjct: 230 AQVRGSEKRACPGSTLP--------PSSVLAGCVGTRARGHGGVQRQRFSAP-------- 273
Query: 245 LGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQA----- 299
S H + +R+ R L P+ A R + P R A P+ A
Sbjct: 274 ---SSHSTSGGRPTGERSSREPLLDPSKAA-----RASALPTARVAHASPPSLAAAQWRL 325
Query: 300 --GRRMPTRLAPPLFLSVS----PDPPTGPQRIPARQPEPRLRAQ 338
G+R PT L + +S DP +G PA+ E RA+
Sbjct: 326 GGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAE 370
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 42.4 bits (98), Expect = 6e-04
Identities = 59/225 (26%), Positives = 81/225 (36%), Gaps = 47/225 (20%)
Query: 137 GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREV-----GGTLGAA 191
GGR A A+ + P + + +GLG + G G P GG GA
Sbjct: 170 GGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGAR 229
Query: 192 AQAKGAE--GCPGAQRPFHAQDHPGPVPARVGCGPL-----GEEQIRRHHAPSCLGLDLG 244
AQ +G+E CPG+ P P GC G Q +R AP
Sbjct: 230 AQVRGSEKRACPGSTLP--------PSSVLAGCVGTRARGHGGVQRQRFSAP-------- 273
Query: 245 LGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQA----- 299
S H + +R+ R L P+ A R + P R A P+ A
Sbjct: 274 ---SSHSTSGGRPTGERSSREPLLDPSKAA-----RASALPTARVAHASPPSLAAAQWRL 325
Query: 300 --GRRMPTRLAPPLFLSVS----PDPPTGPQRIPARQPEPRLRAQ 338
G+R PT L + +S DP +G PA+ E RA+
Sbjct: 326 GGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAE 370
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 42.0 bits (97), Expect = 8e-04
Identities = 54/188 (28%), Positives = 63/188 (33%), Gaps = 32/188 (17%)
Query: 152 QKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGCPGAQRPFHAQD 211
Q P + VA G +G GP GV G+ Q +G +G GA P Q
Sbjct: 619 QGRPGPSGVAGPQGEKGDVGPAGPPGVP---------GSVVQQEGLKGEQGAPGPRGHQG 669
Query: 212 HPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQRAYRHRSLRPN 271
PGP AR GP+G E R P GL G G P
Sbjct: 670 APGPPGAR---GPIGPE--GRDGPPGLQGLRGKKGDMGPPG----------------IPG 708
Query: 272 GTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLS-VSPDPPTGPQRIPARQ 330
PP P P P PG SP P + PP D P GP P +
Sbjct: 709 LLGLQGPPGPPGVP-GPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTK 767
Query: 331 PEPRLRAQ 338
EP R +
Sbjct: 768 GEPGERGE 775
Score = 28.5 bits (62), Expect = 9.3
Identities = 35/131 (26%), Positives = 44/131 (33%), Gaps = 4/131 (3%)
Query: 165 GARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGP--VPARVG- 221
GA G+ A GP G+Q G G + G G PG + PGP P + G
Sbjct: 1204 GADGIAGAAGPPGIQGSPGKEGPPGPQGPS-GLPGIPGEEGKEGRDGKPGPPGEPGKAGE 1262
Query: 222 CGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRP 281
G G E R D G G +S G Q + T P P
Sbjct: 1263 PGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGP 1322
Query: 282 ESYPRRRPAPG 292
P + +PG
Sbjct: 1323 RGPPGKNGSPG 1333
>gi|110815800 WD repeat domain 32 [Homo sapiens]
Length = 559
Score = 41.2 bits (95), Expect = 0.001
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 268 LRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLSVSPDPPTGPQRIP 327
L P A+HPPP P PRR AP SP ++G + AP + +P P+ P P
Sbjct: 38 LHPGADATHPPP-PARSPRRPGAPSLSPAPRSG-ELGLPGAPESSTASAPGEPSPPSP-P 94
Query: 328 ARQPEPRLRAQA 339
R+P P RA++
Sbjct: 95 CRRPGPDCRAKS 106
Score = 33.5 bits (75), Expect = 0.29
Identities = 36/121 (29%), Positives = 41/121 (33%), Gaps = 13/121 (10%)
Query: 137 GGRRPEAAAQAGS-ATQKAPEEAQVAQGGGAR----GLGRAGGPVGVQLPREVGGTLGAA 191
G P AG+ A + P E Q A G G P + PR G +
Sbjct: 5 GPHSPGGDGSAGAGAEEPTPHEGQAAATGPPSPLHPGADATHPPPPARSPRRPGAPSLSP 64
Query: 192 AQAKGAEGCPGAQRPFHAQDHPGPVPARVGC---GPLGEEQIRRHHAPSCLGLDLGLGGS 248
A G G PGA A P P C GP + R H GL GLGG
Sbjct: 65 APRSGELGLPGAPESSTASAPGEPSPPSPPCRRPGPDCRAKSRGRH-----GLGAGLGGP 119
Query: 249 G 249
G
Sbjct: 120 G 120
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 40.4 bits (93), Expect = 0.002
Identities = 32/86 (37%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 144 AAQAGSATQKAPEEAQVAQG-GGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGCPG 202
A G+ Q + A A G GA G A GP G Q P GG G + G G PG
Sbjct: 385 AGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGP---GGPPGPKGNS-GEPGAPG 440
Query: 203 AQRPFHAQDHPGPVPARVGCGPLGEE 228
++ A+ PGPV + GP GEE
Sbjct: 441 SKGDTGAKGEPGPVGVQGPPGPAGEE 466
Score = 36.6 bits (83), Expect = 0.034
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 154 APEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHP 213
AP A GA G GP G P G +GA +A G +G G++ P + P
Sbjct: 315 APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEA-GPQGPRGSEGPQGVRGEP 373
Query: 214 GPVPARVGCGPLG 226
GP GP G
Sbjct: 374 GPPGPAGAAGPAG 386
Score = 33.1 bits (74), Expect = 0.38
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 141 PEAAAQAGS-ATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEG 199
P A Q G+ AP A GARG GP G P+ G GA +KG G
Sbjct: 388 PGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPG-SKGDTG 446
Query: 200 CPGAQRPFHAQDHPGPVPARVGCGPLGE 227
G P Q PGP G GE
Sbjct: 447 AKGEPGPVGVQGPPGPAGEEGKRGARGE 474
Score = 32.3 bits (72), Expect = 0.64
Identities = 53/180 (29%), Positives = 61/180 (33%), Gaps = 38/180 (21%)
Query: 174 GPVGVQLPREVGGTLGAAAQA-----KGAEGCPGAQRPFHAQDHPGP-----------VP 217
GP+G PR + G GA G G PGA P + PGP P
Sbjct: 179 GPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKP 238
Query: 218 ARVG-CGPLGEEQIRRHHAPSCLGLD--------LGLGGSGHDSQQCGQQLQRAYRHRSL 268
R G GP G + R P GL GL G+ D+ G + + S
Sbjct: 239 GRPGERGPPGPQGAR--GLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPG----SP 292
Query: 269 RPNGTASHPPPRPESYPRRRP-APGRSPTFQAGRRMPTRLAPPLFLSVSPDPPTGPQRIP 327
NG PR R RP APG P G T A P P P GP P
Sbjct: 293 GENGAPGQMGPRGLPGERGRPGAPG--PAGARGNDGATGAAGP----PGPTGPAGPPGFP 346
Score = 31.6 bits (70), Expect = 1.1
Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 4/105 (3%)
Query: 122 APLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLP 181
A L ++ H + G + +A +P E G RGL G G P
Sbjct: 259 AGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGP 318
Query: 182 REVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLG 226
G GA GA G PG P PG V A+ GP G
Sbjct: 319 AGARGNDGAT----GAAGPPGPTGPAGPPGFPGAVGAKGEAGPQG 359
Score = 31.2 bits (69), Expect = 1.4
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 140 RPEAAAQAGSATQKAPEEAQVAQG-GGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAE 198
+P G P A+ +G G RG+ GP G + G GA A GA
Sbjct: 657 KPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDA-GAP 715
Query: 199 GCPGAQRPFHAQDHPGPVPARVGCGPLGE 227
G PG+Q Q PG A GP G+
Sbjct: 716 GAPGSQGAPGLQGMPGERGAAGLPGPKGD 744
Score = 30.4 bits (67), Expect = 2.4
Identities = 53/199 (26%), Positives = 62/199 (31%), Gaps = 37/199 (18%)
Query: 147 AGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGCPGAQRP 206
AG + E A A+G GR G P G + R G G A GA G PG P
Sbjct: 1006 AGPPGESGREGAPGAEGSP----GRDGSP-GAKGDRGETGPAGPPG-APGAPGAPGPVGP 1059
Query: 207 FHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQRAYR-H 265
G GP+G R P G D + G+Q R + H
Sbjct: 1060 AGKSGDRGETGPAGPAGPVGPVGARGPAGPQ---------GPRGDKGETGEQGDRGIKGH 1110
Query: 266 RSLR----PNGTASHP----------PPRPESYPRRRPAPGR-------SPTFQAGRRMP 304
R P G P P P P APG+ P G R
Sbjct: 1111 RGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGR 1170
Query: 305 TRLAPPLFLSVSPDPPTGP 323
T A P+ P PP P
Sbjct: 1171 TGDAGPVGPPGPPGPPGPP 1189
Score = 29.6 bits (65), Expect = 4.2
Identities = 33/86 (38%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 133 AERVGGRRPEAAAQAGSATQKAPEEAQVAQGG-GARGLGRAGGPVGVQLPREVG--GTLG 189
A RVG P +G+A P +GG G RG GP G P EVG G G
Sbjct: 880 AGRVGPPGP-----SGNAGPPGPPGPAGKEGGKGPRG---ETGPAG--RPGEVGPPGPPG 929
Query: 190 AAAQAKGAEGCPGAQRPFHAQDHPGP 215
A G +G PGA P A PGP
Sbjct: 930 PA----GEKGSPGADGPAGAPGTPGP 951
Score = 28.9 bits (63), Expect = 7.1
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 163 GGGARGLGRAGGPVGVQLPREVGGTLGAA--------AQAKGAEGCPGAQRPFHAQDHPG 214
G G+RG A G G + P G+ G A A G G PGA+ + PG
Sbjct: 489 GPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPG 548
Query: 215 PVPARVGCGPLGEE 228
P GP G++
Sbjct: 549 PDGKTGPPGPAGQD 562
Score = 28.5 bits (62), Expect = 9.3
Identities = 30/117 (25%), Positives = 40/117 (34%), Gaps = 7/117 (5%)
Query: 141 PEAAAQAGSATQKAPEEAQVAQGG----GARGLGRAGGPVGVQLPREVGGTLGAAAQAKG 196
P + G+ + P Q G G RG GP G+ P G G+ G
Sbjct: 439 PGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRG-FPG 497
Query: 197 AEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQ 253
A+G G + P + PGP + G G P GL G G D +
Sbjct: 498 ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRP--GEAGLPGAKGLTGSPGSPGPDGK 552
Score = 28.5 bits (62), Expect = 9.3
Identities = 43/171 (25%), Positives = 53/171 (30%), Gaps = 33/171 (19%)
Query: 141 PEAAAQAGSATQKA-PEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEG 199
P A GS + P EA + G G + GP G P G G G G
Sbjct: 514 PGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRP----GPPG 569
Query: 200 CPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQL 259
PGA+ PGP A G GE + G +G +G D +
Sbjct: 570 PPGARGQAGVMGFPGPKGAAGEPGKAGERGVP--------GPPGAVGPAGKDGEA----- 616
Query: 260 QRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPP 310
G P P + R P SP FQ +P PP
Sbjct: 617 ------------GAQGPPGPAGPAGERGEQGPAGSPGFQG---LPGPAGPP 652
Score = 28.5 bits (62), Expect = 9.3
Identities = 28/92 (30%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 140 RPEAAAQAGSATQK--APEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAA--QAK 195
+P A + G A K A G +G G P G + R G GA A
Sbjct: 822 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAP-GAKGARGSAGPPGATGFPGAA 880
Query: 196 GAEGCPGAQRPFHAQDHPGPVPARVGCGPLGE 227
G G PG PGP G GP GE
Sbjct: 881 GRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGE 912
>gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo
sapiens]
Length = 218
Score = 40.0 bits (92), Expect = 0.003
Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 256 GQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLSV 315
G+Q R+Y + P G S PPP P P R P P R P PPL
Sbjct: 4 GKQRDRSYSNFVFFPCGLWSPPPPLPPRKPPRPPKPPRP-------LPPNPPRPPLPPPR 56
Query: 316 SPDPPTGPQRIPARQPEPRLRAQA 339
P PP P R P + P P AQ+
Sbjct: 57 PPKPPLPPPR-PPKPPSPLGLAQS 79
>gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo
sapiens]
Length = 218
Score = 40.0 bits (92), Expect = 0.003
Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 256 GQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLSV 315
G+Q R+Y + P G S PPP P P R P P R P PPL
Sbjct: 4 GKQRDRSYSNFVFFPCGLWSPPPPLPPRKPPRPPKPPRP-------LPPNPPRPPLPPPR 56
Query: 316 SPDPPTGPQRIPARQPEPRLRAQA 339
P PP P R P + P P AQ+
Sbjct: 57 PPKPPLPPPR-PPKPPSPLGLAQS 79
>gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo
sapiens]
Length = 218
Score = 40.0 bits (92), Expect = 0.003
Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 256 GQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLSV 315
G+Q R+Y + P G S PPP P P R P P R P PPL
Sbjct: 4 GKQRDRSYSNFVFFPCGLWSPPPPLPPRKPPRPPKPPRP-------LPPNPPRPPLPPPR 56
Query: 316 SPDPPTGPQRIPARQPEPRLRAQA 339
P PP P R P + P P AQ+
Sbjct: 57 PPKPPLPPPR-PPKPPSPLGLAQS 79
>gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]
Length = 1426
Score = 40.0 bits (92), Expect = 0.003
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 253 QQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLF 312
QQC Q ++H P G PPP + P APG + F G MP L PP
Sbjct: 493 QQCSLQDMMVHQHG---PRGVVRGPPPPYQMTPSEGWAPGGTEPFSDGINMPHSL-PPRG 548
Query: 313 LSVSPDPPTGPQRIP 327
++ P+ P R+P
Sbjct: 549 MAPHPNMPGSQMRLP 563
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 38.9 bits (89), Expect = 0.007
Identities = 53/185 (28%), Positives = 63/185 (34%), Gaps = 31/185 (16%)
Query: 165 GARGLGRAGGPVGVQLPREVGGTLGAAAQA-----------KGAEGCPGAQRPFHAQDHP 213
G G A GP G Q PR GT G+ A GA+G GA A P
Sbjct: 375 GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP 434
Query: 214 GP--VPARVGC-GPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQ--------QCGQQLQRA 262
GP P G GPLG + + P G G G G++ +R
Sbjct: 435 GPRGPPGPQGATGPLGPK--GQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRG 492
Query: 263 YRHRSLRPNGTASHPPPRPESYPRRRPAPGR----SPTFQAGRRMPTRLAPPLFLSVSPD 318
R P G PP P R PG+ P G R P+ LA P + P
Sbjct: 493 ARG---EPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG 549
Query: 319 PPTGP 323
P P
Sbjct: 550 RPGEP 554
Score = 36.2 bits (82), Expect = 0.045
Identities = 47/185 (25%), Positives = 58/185 (31%), Gaps = 22/185 (11%)
Query: 137 GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKG 196
G R P T A E + G GR G GV+ R G +GA A G
Sbjct: 1014 GDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGA-AGVKGDRGETGAVGAPG-APG 1071
Query: 197 AEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCG 256
G PG P Q G A+ GP G R P G D + G
Sbjct: 1072 PPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQ---------GPRGDKGEAG 1122
Query: 257 QQLQRAYR-HRSLR----------PNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPT 305
+ +R + HR P+G P S PR P P +P
Sbjct: 1123 EPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPG 1182
Query: 306 RLAPP 310
+ PP
Sbjct: 1183 PIGPP 1187
Score = 34.3 bits (77), Expect = 0.17
Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 165 GARGL-GRAGGP--VGVQLPREVGGTLGAAAQ--AKGAEGCPGAQRPFHAQDHPGPVPAR 219
G RG G G P G+Q PR + GT G A G G PGAQ P Q PG A
Sbjct: 699 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA 758
Query: 220 VGCGPLGE 227
GP G+
Sbjct: 759 GIAGPKGD 766
Score = 33.1 bits (74), Expect = 0.38
Identities = 52/210 (24%), Positives = 66/210 (31%), Gaps = 25/210 (11%)
Query: 141 PEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGC 200
P A Q G+ ++ E Q G G +G P G Q P V G GA +GA+G
Sbjct: 839 PGADGQPGAKGEQG-EAGQKGDAGAPGPQGPSGAP-GPQGPTGVTGPKGA----RGAQGP 892
Query: 201 PGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQ 260
PGA A GP + GP G P D G G + G
Sbjct: 893 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGP 952
Query: 261 RAYRHRSLRPNGTASHPPPRPESYPRRR-----------------PAPGRSPTFQAGRRM 303
+ + + PP P+ +R P P P Q
Sbjct: 953 PGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA 1012
Query: 304 PTRLAPPLFLSVSPDPPTGPQRIPARQPEP 333
PP V P TGP P R+ P
Sbjct: 1013 SGDRGPP--GPVGPPGLTGPAGEPGREGSP 1040
Score = 30.8 bits (68), Expect = 1.9
Identities = 29/90 (32%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 143 AAAQAGSATQKAPEEAQVAQGG-GARGLGRAGGPVGVQLPREVGGTLGAAAQA-----KG 196
A + G P + A+G G RG GP G P G GA + KG
Sbjct: 799 ANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG 858
Query: 197 AEGCPGAQRPFHAQDHPGPVPARVGCGPLG 226
G PG Q P A PGP GP G
Sbjct: 859 DAGAPGPQGPSGA---PGPQGPTGVTGPKG 885
Score = 28.5 bits (62), Expect = 9.3
Identities = 25/68 (36%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 161 AQGGGARGLGRAGGPVGVQLPREVGGTLG--AAAQAKGAEGCPGAQRPFHAQDHPGPVPA 218
A GARG GP G P G G A AKG G GA+ P AQ G
Sbjct: 338 AGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGT 397
Query: 219 RVGCGPLG 226
GP G
Sbjct: 398 PGSPGPAG 405
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 38.9 bits (89), Expect = 0.007
Identities = 53/185 (28%), Positives = 63/185 (34%), Gaps = 31/185 (16%)
Query: 165 GARGLGRAGGPVGVQLPREVGGTLGAAAQA-----------KGAEGCPGAQRPFHAQDHP 213
G G A GP G Q PR GT G+ A GA+G GA A P
Sbjct: 306 GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP 365
Query: 214 GP--VPARVGC-GPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQ--------QCGQQLQRA 262
GP P G GPLG + + P G G G G++ +R
Sbjct: 366 GPRGPPGPQGATGPLGPK--GQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRG 423
Query: 263 YRHRSLRPNGTASHPPPRPESYPRRRPAPGR----SPTFQAGRRMPTRLAPPLFLSVSPD 318
R P G PP P R PG+ P G R P+ LA P + P
Sbjct: 424 ARG---EPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG 480
Query: 319 PPTGP 323
P P
Sbjct: 481 RPGEP 485
Score = 36.2 bits (82), Expect = 0.045
Identities = 47/185 (25%), Positives = 58/185 (31%), Gaps = 22/185 (11%)
Query: 137 GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKG 196
G R P T A E + G GR G GV+ R G +GA A G
Sbjct: 945 GDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGA-AGVKGDRGETGAVGAPG-APG 1002
Query: 197 AEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCG 256
G PG P Q G A+ GP G R P G D + G
Sbjct: 1003 PPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQ---------GPRGDKGEAG 1053
Query: 257 QQLQRAYR-HRSLR----------PNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPT 305
+ +R + HR P+G P S PR P P +P
Sbjct: 1054 EPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPG 1113
Query: 306 RLAPP 310
+ PP
Sbjct: 1114 PIGPP 1118
Score = 34.3 bits (77), Expect = 0.17
Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 165 GARGL-GRAGGP--VGVQLPREVGGTLGAAAQ--AKGAEGCPGAQRPFHAQDHPGPVPAR 219
G RG G G P G+Q PR + GT G A G G PGAQ P Q PG A
Sbjct: 630 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA 689
Query: 220 VGCGPLGE 227
GP G+
Sbjct: 690 GIAGPKGD 697
Score = 33.1 bits (74), Expect = 0.38
Identities = 52/210 (24%), Positives = 66/210 (31%), Gaps = 25/210 (11%)
Query: 141 PEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGC 200
P A Q G+ ++ E Q G G +G P G Q P V G GA +GA+G
Sbjct: 770 PGADGQPGAKGEQG-EAGQKGDAGAPGPQGPSGAP-GPQGPTGVTGPKGA----RGAQGP 823
Query: 201 PGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQ 260
PGA A GP + GP G P D G G + G
Sbjct: 824 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGP 883
Query: 261 RAYRHRSLRPNGTASHPPPRPESYPRRR-----------------PAPGRSPTFQAGRRM 303
+ + + PP P+ +R P P P Q
Sbjct: 884 PGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA 943
Query: 304 PTRLAPPLFLSVSPDPPTGPQRIPARQPEP 333
PP V P TGP P R+ P
Sbjct: 944 SGDRGPP--GPVGPPGLTGPAGEPGREGSP 971
Score = 30.8 bits (68), Expect = 1.9
Identities = 29/90 (32%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 143 AAAQAGSATQKAPEEAQVAQGG-GARGLGRAGGPVGVQLPREVGGTLGAAAQA-----KG 196
A + G P + A+G G RG GP G P G GA + KG
Sbjct: 730 ANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG 789
Query: 197 AEGCPGAQRPFHAQDHPGPVPARVGCGPLG 226
G PG Q P A PGP GP G
Sbjct: 790 DAGAPGPQGPSGA---PGPQGPTGVTGPKG 816
Score = 28.5 bits (62), Expect = 9.3
Identities = 25/68 (36%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 161 AQGGGARGLGRAGGPVGVQLPREVGGTLG--AAAQAKGAEGCPGAQRPFHAQDHPGPVPA 218
A GARG GP G P G G A AKG G GA+ P AQ G
Sbjct: 269 AGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGT 328
Query: 219 RVGCGPLG 226
GP G
Sbjct: 329 PGSPGPAG 336
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 38.5 bits (88), Expect = 0.009
Identities = 50/170 (29%), Positives = 57/170 (33%), Gaps = 28/170 (16%)
Query: 185 GGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLG 244
GG G QA G G QR + P P P + S G
Sbjct: 13 GGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSS-----------SSSGSSGSSG 61
Query: 245 LGGSGHDSQ-------QCGQQLQRAYRHRSLRPNGTA--SHPPPRPESYPRRRPAPGRSP 295
GGSG Q G +RA R GTA + PP P P P PG
Sbjct: 62 GGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPG--- 118
Query: 296 TFQAGRRMPTRLAPPL-FLSVSPDPPTGPQRIPARQ--PEPRLRAQALLS 342
G P L PL L +P PP P R R+ E R+ AL S
Sbjct: 119 --PKGPASPRPLPSPLPLLETTPFPPDTPSRRQDRRGGGEERVLLSALSS 166
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,590,132
Number of Sequences: 37866
Number of extensions: 1097363
Number of successful extensions: 8455
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 577
Number of HSP's that attempted gapping in prelim test: 7058
Number of HSP's gapped (non-prelim): 1889
length of query: 347
length of database: 18,247,518
effective HSP length: 103
effective length of query: 244
effective length of database: 14,347,320
effective search space: 3500746080
effective search space used: 3500746080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.