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Search of human proteins with 239747304
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747304 PREDICTED: hypothetical protein XP_002346416 [Homo
sapiens]
(124 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747304 PREDICTED: hypothetical protein XP_002346416 [Homo ... 253 3e-68
gi|239741128 PREDICTED: hypothetical protein XP_002342116 [Homo ... 234 1e-62
gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo ... 38 0.002
gi|155029552 hypothetical protein LOC388115 [Homo sapiens] 36 0.009
gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precurs... 35 0.019
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ... 34 0.025
gi|24308326 BR serine/threonine kinase 1 [Homo sapiens] 34 0.025
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 34 0.033
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 34 0.033
gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo ... 34 0.033
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ... 33 0.043
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ... 33 0.043
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ... 33 0.043
gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens] 33 0.043
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 33 0.043
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 33 0.043
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 33 0.043
gi|13994287 BTE-binding protein 4 [Homo sapiens] 33 0.056
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 33 0.056
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 33 0.056
gi|239756974 PREDICTED: hypothetical protein XP_002345129 [Homo ... 33 0.056
gi|239754935 PREDICTED: hypothetical protein [Homo sapiens] 33 0.056
gi|239751487 PREDICTED: hypothetical protein XP_002347848 [Homo ... 33 0.056
gi|239749477 PREDICTED: hypothetical protein XP_002347062 [Homo ... 33 0.056
gi|239743615 PREDICTED: hypothetical protein XP_002342915 [Homo ... 33 0.056
gi|91208420 bassoon protein [Homo sapiens] 33 0.056
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 33 0.056
gi|169162343 PREDICTED: hypothetical protein [Homo sapiens] 33 0.073
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 33 0.073
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 33 0.073
>gi|239747304 PREDICTED: hypothetical protein XP_002346416 [Homo
sapiens]
Length = 124
Score = 253 bits (646), Expect = 3e-68
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MYLRPYRDSLHFAQSNDSLMVARGENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQA 60
MYLRPYRDSLHFAQSNDSLMVARGENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQA
Sbjct: 1 MYLRPYRDSLHFAQSNDSLMVARGENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQA 60
Query: 61 GAERAAGEAADCRRTEGRVGARVTLSPALIQPGGGRFDSAVMSLSAGTKVFSENMGRRED 120
GAERAAGEAADCRRTEGRVGARVTLSPALIQPGGGRFDSAVMSLSAGTKVFSENMGRRED
Sbjct: 61 GAERAAGEAADCRRTEGRVGARVTLSPALIQPGGGRFDSAVMSLSAGTKVFSENMGRRED 120
Query: 121 PSPP 124
PSPP
Sbjct: 121 PSPP 124
>gi|239741128 PREDICTED: hypothetical protein XP_002342116 [Homo
sapiens]
Length = 132
Score = 234 bits (597), Expect = 1e-62
Identities = 119/132 (90%), Positives = 120/132 (90%), Gaps = 8/132 (6%)
Query: 1 MYLRPYRDSLHFAQSNDSLMVARGENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQA 60
MYLRPYRDSLHFAQSNDSLMVARGENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQA
Sbjct: 1 MYLRPYRDSLHFAQSNDSLMVARGENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQA 60
Query: 61 GAERAAGEAADCRRTEGRVGA--------RVTLSPALIQPGGGRFDSAVMSLSAGTKVFS 112
GAERAAGEAADCRRT G+ RVTLSPALIQPGGGRFDSAVMSLSAGTKVFS
Sbjct: 61 GAERAAGEAADCRRTVWASGSAAPTPPRGRVTLSPALIQPGGGRFDSAVMSLSAGTKVFS 120
Query: 113 ENMGRREDPSPP 124
ENMGRREDPSPP
Sbjct: 121 ENMGRREDPSPP 132
>gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo
sapiens]
Length = 267
Score = 37.7 bits (86), Expect = 0.002
Identities = 38/128 (29%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 5 PYRDSLHFAQSNDSLMVARGENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQAGAER 64
P R ++ AQ + + RG R +R G G +PRPSAA GP Q A R
Sbjct: 43 PRRRTVRTAQPKERSPLRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAAR 102
Query: 65 AAGEAADCRRTEGR--VGARVTLSPALIQPGGGRFDSAVMSLSAGTKV-FSENMG----- 116
C EGR G T + G +A +++AG + E G
Sbjct: 103 G------CELREGRAEAGHSSTSQKDTLSKGSA---AAATAVAAGKHLAVPETRGGVPAR 153
Query: 117 RREDPSPP 124
RRE +PP
Sbjct: 154 RRETANPP 161
>gi|155029552 hypothetical protein LOC388115 [Homo sapiens]
Length = 534
Score = 35.8 bits (81), Expect = 0.009
Identities = 34/128 (26%), Positives = 42/128 (32%), Gaps = 44/128 (34%)
Query: 23 RGENPRSGRRERGARG------------AGGAGNRAPRPSAAPTCGPGQAGAERAAGEA- 69
RGE P RG R G G +A RPS AP G G ER G A
Sbjct: 280 RGEGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRAR 339
Query: 70 -----------------ADCRRT--------------EGRVGARVTLSPALIQPGGGRFD 98
R T +GR+G+ SPAL P G + +
Sbjct: 340 RWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGE 399
Query: 99 SAVMSLSA 106
S + S+
Sbjct: 400 SVASTASS 407
>gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precursor
[Homo sapiens]
Length = 864
Score = 34.7 bits (78), Expect = 0.019
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 2 YLRPYRDSLHFAQSNDSLMVARGENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQAG 61
YLRP RD Q++ + R E P SG R A G GG +RAP P A + G G
Sbjct: 239 YLRP-RDRGR-TQASPEKLENRSEAPGSGGRGGAAGGGGGWTSRAPSPQAGRSLQEGAEG 296
Query: 62 AE 63
+
Sbjct: 297 GQ 298
>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 5 [Homo sapiens]
Length = 561
Score = 34.3 bits (77), Expect = 0.025
Identities = 22/68 (32%), Positives = 27/68 (39%)
Query: 24 GENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQAGAERAAGEAADCRRTEGRVGARV 83
G R GR RGA + G G PR A + G A G ++ GR G V
Sbjct: 494 GARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGGKGV 553
Query: 84 TLSPALIQ 91
P L+Q
Sbjct: 554 EAGPDLLQ 561
>gi|24308326 BR serine/threonine kinase 1 [Homo sapiens]
Length = 778
Score = 34.3 bits (77), Expect = 0.025
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 34 RGARGAGGAGNRAPRPSAAPTCGPGQAGAERAAG 67
RG RG GGAG + P PSA T PG G+ R++G
Sbjct: 481 RGPRG-GGAGEQPPPPSARSTPLPGPPGSPRSSG 513
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 33.9 bits (76), Expect = 0.033
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 27 PRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQAGAERAAGEAADCRRTEGRVGAR 82
P R R + G G G+ AP A P G+A A R+A + + R+T+ RVG+R
Sbjct: 274 PLPTRAPRTSAGLAGVGSGAPGEPAEP----GRARAPRSAPSSREPRQTKRRVGSR 325
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 33.9 bits (76), Expect = 0.033
Identities = 28/73 (38%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 30 GRRERGARGAG-GAGNRAPRPSAAPTC-GPGQAGAERAAGEAADCRRTEGRVGARVTLSP 87
GRR R A G G AP PS A +C GP A A R D GR P
Sbjct: 107 GRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHS---GP 163
Query: 88 ALIQPGGGRFDSA 100
PGGGR A
Sbjct: 164 RAGTPGGGRSSRA 176
>gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo
sapiens]
Length = 337
Score = 33.9 bits (76), Expect = 0.033
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 22 ARGENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQAGAERAAGEAADCRRTEGRVGA 81
A GE R+ + +RG GG R +P+AA P +A A A A R+ R G
Sbjct: 190 ATGEKTRAAK----SRGGGGKKPRREKPAAAGAKNPQKAAAAGAKFREAGGRKPRWR-GQ 244
Query: 82 RVTLSPALIQPGGGRFDSAVMSLSAGTKVFSENMGRREDPS 122
+ T + A + GGG +AG K+ RR S
Sbjct: 245 KATEAGAKSRGGGG--IKPQKPAAAGAKIHGGKKPRRRGQS 283
>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 6 [Homo sapiens]
Length = 562
Score = 33.5 bits (75), Expect = 0.043
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 24 GENPRSGRRERGARGAGGAGNRAPRPSA--APTCGPGQAGAERAAGEAADCRRTEGRVGA 81
G R GR RGA + G G PR A + GPG A R A A +R G+ G
Sbjct: 494 GARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQ-GK 552
Query: 82 RVTLSPALIQ 91
V P L+Q
Sbjct: 553 GVEAGPDLLQ 562
>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Homo sapiens]
Length = 527
Score = 33.5 bits (75), Expect = 0.043
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 24 GENPRSGRRERGARGAGGAGNRAPRPSA--APTCGPGQAGAERAAGEAADCRRTEGRVGA 81
G R GR RGA + G G PR A + GPG A R A A +R G+ G
Sbjct: 459 GARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQ-GK 517
Query: 82 RVTLSPALIQ 91
V P L+Q
Sbjct: 518 GVEAGPDLLQ 527
>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
Length = 464
Score = 33.5 bits (75), Expect = 0.043
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 24 GENPRSGRRERGARGAGGAGNRAPRPSA--APTCGPGQAGAERAAGEAADCRRTEGRVGA 81
G R GR RGA + G G PR A + GPG A R A A +R G+ G
Sbjct: 396 GARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQ-GK 454
Query: 82 RVTLSPALIQ 91
V P L+Q
Sbjct: 455 GVEAGPDLLQ 464
>gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]
Length = 403
Score = 33.5 bits (75), Expect = 0.043
Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 7 RDSLHFAQSNDSLMVARGE--NPRSGRRER-GARGAGGAGNRAPRPSAAPTCG---PGQA 60
R+ + +AQ +L +GE PR RRE G G AG P AAP G P
Sbjct: 35 REKMGWAQVVKNLAEKKGEFREPRPPRREEESGGGGGSAGLGGPAGLAAPDLGDFPPAGR 94
Query: 61 GAERA-----AGEAADCRRTEGRVGA 81
G + AGEA D R+ +G A
Sbjct: 95 GDPKGRRRDPAGEAVDPRKKKGAAEA 120
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 33.5 bits (75), Expect = 0.043
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 11 HFAQSNDSLMVARGENPRSG----RRERGARGAGGAGNRAPRPSAAPTCGPG-QAGAERA 65
H +N+SL A G P+ G + + G AG +A P PG + A
Sbjct: 74 HPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPK 133
Query: 66 AGEAADCRRTEGRVGARVTLSPALIQPGGGRFDSAV 101
GE A R +GA T P + PGGG +AV
Sbjct: 134 MGEPAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAV 169
Score = 25.8 bits (55), Expect = 8.9
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 35 GARGAGGAGN---RAPRPSAAPTCGPGQAGAERAAGEAADCRRTEGRVGARVTLSPALIQ 91
G GAGGAG A +AA G G G + + + G + + P
Sbjct: 269 GGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPG--- 325
Query: 92 PGGGRFDSAVMSLSAGTKVFSENMGRREDPS 122
GGG + + + F G+ + PS
Sbjct: 326 -GGGAASLSKAAAGSAAGGFQRFAGQNQHPS 355
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 33.5 bits (75), Expect = 0.043
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 11 HFAQSNDSLMVARGENPRSG----RRERGARGAGGAGNRAPRPSAAPTCGPG-QAGAERA 65
H +N+SL A G P+ G + + G AG +A P PG + A
Sbjct: 74 HPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPK 133
Query: 66 AGEAADCRRTEGRVGARVTLSPALIQPGGGRFDSAV 101
GE A R +GA T P + PGGG +AV
Sbjct: 134 MGEPAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAV 169
Score = 25.8 bits (55), Expect = 8.9
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 35 GARGAGGAGN---RAPRPSAAPTCGPGQAGAERAAGEAADCRRTEGRVGARVTLSPALIQ 91
G GAGGAG A +AA G G G + + + G + + P
Sbjct: 269 GGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPG--- 325
Query: 92 PGGGRFDSAVMSLSAGTKVFSENMGRREDPS 122
GGG + + + F G+ + PS
Sbjct: 326 -GGGAASLSKAAAGSAAGGFQRFAGQNQHPS 355
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 33.5 bits (75), Expect = 0.043
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 11 HFAQSNDSLMVARGENPRSG----RRERGARGAGGAGNRAPRPSAAPTCGPG-QAGAERA 65
H +N+SL A G P+ G + + G AG +A P PG + A
Sbjct: 74 HPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPK 133
Query: 66 AGEAADCRRTEGRVGARVTLSPALIQPGGGRFDSAV 101
GE A R +GA T P + PGGG +AV
Sbjct: 134 MGEPAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAV 169
Score = 25.8 bits (55), Expect = 8.9
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 35 GARGAGGAGN---RAPRPSAAPTCGPGQAGAERAAGEAADCRRTEGRVGARVTLSPALIQ 91
G GAGGAG A +AA G G G + + + G + + P
Sbjct: 269 GGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPG--- 325
Query: 92 PGGGRFDSAVMSLSAGTKVFSENMGRREDPS 122
GGG + + + F G+ + PS
Sbjct: 326 -GGGAASLSKAAAGSAAGGFQRFAGQNQHPS 355
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 33.1 bits (74), Expect = 0.056
Identities = 31/90 (34%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 22 ARGENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQAGAER--AAGEAADCRRTEGRV 79
A G + R+ RRE + G G P P AA GPG A A AA AD R G
Sbjct: 38 AAGLDVRAARREAASPGTPGP---PPPPPAASGPGPGAAAAPHLLAASILADLRGGPGAA 94
Query: 80 ---GARVTLSPALIQPGGGRFDSAVMSLSA 106
+ + S A P GR A S +A
Sbjct: 95 PGGASPASSSSAASSPSSGRAPGAAPSAAA 124
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 33.1 bits (74), Expect = 0.056
Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 24 GENPRSGRRERGARGAGGAGNRAPRPSA--APTCGPGQAGAERAAGEAADCRRTEGRVGA 81
G R GR RGA + G G PR A + GPG A R A A +R G GA
Sbjct: 459 GARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRGA 518
Query: 82 R 82
R
Sbjct: 519 R 519
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 33.1 bits (74), Expect = 0.056
Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 24 GENPRSGRRERGARGAGGAGNRAPRPSA--APTCGPGQAGAERAAGEAADCRRTEGRVGA 81
G R GR RGA + G G PR A + GPG A R A A +R G GA
Sbjct: 494 GARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRGA 553
Query: 82 R 82
R
Sbjct: 554 R 554
>gi|239756974 PREDICTED: hypothetical protein XP_002345129 [Homo
sapiens]
Length = 169
Score = 33.1 bits (74), Expect = 0.056
Identities = 20/54 (37%), Positives = 23/54 (42%)
Query: 24 GENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQAGAERAAGEAADCRRTEG 77
G P G A G GG RA A P PG GAER +G A+ + G
Sbjct: 113 GAEPTFGGGAARASGIGGGAARAYGIGAGPQAFPGWGGAERISGIRAEPQEEAG 166
>gi|239754935 PREDICTED: hypothetical protein [Homo sapiens]
Length = 397
Score = 33.1 bits (74), Expect = 0.056
Identities = 31/81 (38%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 22 ARGENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQAGAERAAGEAADC--RRTEGRV 79
A G+ R GRR RG G G RA R P G G+ G AA A C R G +
Sbjct: 235 ALGKGGRLGRRCRG-----GGGERAGRKEGCPLWGWGRRGEGAAARAAPPCGQPRELGTL 289
Query: 80 GAR------VTLSPALIQPGG 94
AR L P L PGG
Sbjct: 290 AARPACCHLAPLRPCL-SPGG 309
>gi|239751487 PREDICTED: hypothetical protein XP_002347848 [Homo
sapiens]
Length = 169
Score = 33.1 bits (74), Expect = 0.056
Identities = 20/54 (37%), Positives = 23/54 (42%)
Query: 24 GENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQAGAERAAGEAADCRRTEG 77
G P G A G GG RA A P PG GAER +G A+ + G
Sbjct: 113 GAEPTFGGGAARASGIGGGAARAYGIGAGPQAFPGWGGAERISGIRAEPQEEAG 166
>gi|239749477 PREDICTED: hypothetical protein XP_002347062 [Homo
sapiens]
Length = 397
Score = 33.1 bits (74), Expect = 0.056
Identities = 31/81 (38%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 22 ARGENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQAGAERAAGEAADC--RRTEGRV 79
A G+ R GRR RG G G RA R P G G+ G AA A C R G +
Sbjct: 235 ALGKGGRLGRRCRG-----GGGERAGRKEGCPLWGWGRRGEGAAARAAPPCGQPRELGTL 289
Query: 80 GAR------VTLSPALIQPGG 94
AR L P L PGG
Sbjct: 290 AARPACCHLAPLRPCL-SPGG 309
>gi|239743615 PREDICTED: hypothetical protein XP_002342915 [Homo
sapiens]
Length = 397
Score = 33.1 bits (74), Expect = 0.056
Identities = 31/81 (38%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 22 ARGENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQAGAERAAGEAADC--RRTEGRV 79
A G+ R GRR RG G G RA R P G G+ G AA A C R G +
Sbjct: 235 ALGKGGRLGRRCRG-----GGGERAGRKEGCPLWGWGRRGEGAAARAAPPCGQPRELGTL 289
Query: 80 GAR------VTLSPALIQPGG 94
AR L P L PGG
Sbjct: 290 AARPACCHLAPLRPCL-SPGG 309
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 33.1 bits (74), Expect = 0.056
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 27 PRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQAGAERAAGEAADCRRTEGRVGARVTLS 86
P + G++G A + P A P GPG AG + A G+ GA
Sbjct: 3836 PPRAEQTNGSKGTAKAPQQGRAPQAQPAPGPGPAGVKAGARPGGTPGAPAGQPGADGESV 3895
Query: 87 PALIQPGGGRFDSAVM--SLSAGTKVFS 112
+ I PGG + + ++SA K FS
Sbjct: 3896 FSKILPGGAAEQAGKLTEAVSAFGKKFS 3923
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 33.1 bits (74), Expect = 0.056
Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 22/114 (19%)
Query: 23 RGENPRSGRRERGARGAGGAGNRAPRPSAAPTCGPGQAGAERAAGEAADCRRTEGRVGAR 82
R +P+ R R GG G A+ PG A A +AAD R G+ R
Sbjct: 1316 RSASPQRAARPRLEEAPGGQGRPEAGRPASEARAPGLA-----AADAADAARAGGKEAPR 1370
Query: 83 VT------------LSPALIQPGGGRFDSAVMSLSAGTKVFSENMGRREDPSPP 124
+PA PGGG + AG + G R P PP
Sbjct: 1371 AAAGSELCRREGPGAAPAFAGPGGGGSGALEAEGRAGARA-----GPRPGPRPP 1419
Score = 32.3 bits (72), Expect = 0.096
Identities = 27/68 (39%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 28 RSGRRERGARGAGGAGNRAPRPSAAPT-CGPGQAGAERAAGEAADCRRTEGRVGARVTLS 86
R+G +E AG R P AAP GPG G+ A EA EGR GAR
Sbjct: 1362 RAGGKEAPRAAAGSELCRREGPGAAPAFAGPGGGGS--GALEA------EGRAGARAGPR 1413
Query: 87 PALIQPGG 94
P PGG
Sbjct: 1414 PGPRPPGG 1421
>gi|169162343 PREDICTED: hypothetical protein [Homo sapiens]
Length = 189
Score = 32.7 bits (73), Expect = 0.073
Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 23 RGENPRSGRRERGARGAGGAGNR---------APRPSAAPTCGPGQAGAERAAGEAADCR 73
RGE R G+ A+G G+ +R A R A C P QAG+ RA+ A R
Sbjct: 13 RGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAGSGRASRRRA-VR 71
Query: 74 RTEGR-VGARVTLSPALIQPG 93
R GR + L P L PG
Sbjct: 72 RVSGRWLPLSRPLLPLLSHPG 92
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 32.7 bits (73), Expect = 0.073
Identities = 28/73 (38%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 30 GRRERGARGAG-GAGNRAPRPSAAPTC-GPGQAGAERAAGEAADCRRTEGRVGARVTLSP 87
GRR R A G G AP PS A +C GP A A R D G G P
Sbjct: 107 GRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWD---ASGGGGRGSHSGP 163
Query: 88 ALIQPGGGRFDSA 100
PGGGR A
Sbjct: 164 RAGTPGGGRSSRA 176
Score = 25.8 bits (55), Expect = 8.9
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 24/111 (21%)
Query: 19 LMVARGENPRSGRRERGARGA----------GGAGNRA-PRPSAAPTCGPGQAGAERAAG 67
L A E+PRSGR A+G+ G +G R P PS A + G G
Sbjct: 343 LSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRA------RPGKPAPRG 396
Query: 68 EAADCRRTEGRVGARVTLSPALIQPGGGRFDSAVMSLSAGTKVFSENMGRR 118
A R G G+ +T L+ G G + ++ S GT + G R
Sbjct: 397 SAPPARLRGGGGGSGLT---QLVGSGRG----SGVTHSVGTHALATRRGSR 440
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 32.7 bits (73), Expect = 0.073
Identities = 28/73 (38%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 30 GRRERGARGAG-GAGNRAPRPSAAPTC-GPGQAGAERAAGEAADCRRTEGRVGARVTLSP 87
GRR R A G G AP PS A +C GP A A R D G G P
Sbjct: 107 GRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWD---ASGGGGRGSHSGP 163
Query: 88 ALIQPGGGRFDSA 100
PGGGR A
Sbjct: 164 RAGTPGGGRSSRA 176
Score = 25.8 bits (55), Expect = 8.9
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 24/111 (21%)
Query: 19 LMVARGENPRSGRRERGARGA----------GGAGNRA-PRPSAAPTCGPGQAGAERAAG 67
L A E+PRSGR A+G+ G +G R P PS A + G G
Sbjct: 343 LSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRA------RPGKPAPRG 396
Query: 68 EAADCRRTEGRVGARVTLSPALIQPGGGRFDSAVMSLSAGTKVFSENMGRR 118
A R G G+ +T L+ G G + ++ S GT + G R
Sbjct: 397 SAPPARLRGGGGGSGLT---QLVGSGRG----SGVTHSVGTHALATRRGSR 440
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,678,903
Number of Sequences: 37866
Number of extensions: 303288
Number of successful extensions: 2882
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 332
Number of HSP's that attempted gapping in prelim test: 2230
Number of HSP's gapped (non-prelim): 958
length of query: 124
length of database: 18,247,518
effective HSP length: 89
effective length of query: 35
effective length of database: 14,877,444
effective search space: 520710540
effective search space used: 520710540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.