Guide to the Human Genome
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Name: LOC100287358 Sequence: fasta or formatted (132aa) NCBI GI: 239741128
Description:

PREDICTED: hypothetical protein XP_002342116

Not currently referenced in the text

Other entries for this name:
alt prot {97aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.2         20           2
 C cysteine            1.5          2           1
 D aspartate           3.8          5           1
 E glutamate           4.5          6           1
 F phenylalanine       2.3          3           1
 G glycine            13.6         18           3
 H histidine           0.8          1           1
 I isoleucine          0.8          1           1
 K lysine              0.8          1           1
 L leucine             4.5          6           1
 M methionine          3.0          4           1
 N asparagine          3.0          4           1
 P proline            10.6         14           2
 Q glutamine           2.3          3           1
 R arginine           13.6         18           2
 S serine              9.8         13           1
 T threonine           3.8          5           1
 V valine              3.8          5           1
 W tryptophan          0.8          1           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342116 
LOC100290504          0.850   PREDICTED: hypothetical protein XP_002346416 
LOC100290139          0.061   PREDICTED: hypothetical protein XP_002346782 
LOC100287250          0.049   PREDICTED: hypothetical protein XP_002344493 
SLC2A4RG              0.049   SLC2A4 regulator 
LOC100292443          0.045   PREDICTED: hypothetical protein 
COL1A2                0.041   alpha 2 type I collagen 
LOC100291781          0.041   PREDICTED: hypothetical protein XP_002344871 
LOC100290673          0.041   PREDICTED: hypothetical protein XP_002347567 
LOC100286890          0.041   PREDICTED: hypothetical protein XP_002343388 
LOC100292143          0.041   PREDICTED: hypothetical protein 
LOC100132261          0.041   PREDICTED: similar to hCG2023245 
PHOX2B                0.041   paired-like homeobox 2b 
LTK                   0.041   leukocyte receptor tyrosine kinase isoform 1 precurs...
LOC100288835          0.041   PREDICTED: hypothetical protein XP_002342616 
BRSK1                 0.041   BR serine/threonine kinase 1 
ARID3C                0.041   AT rich interactive domain 3C (BRIGHT- like) 
SAMD1                 0.041   sterile alpha motif domain containing 1 
LOC100293088          0.037   PREDICTED: hypothetical protein 
LOC100289467          0.037   PREDICTED: hypothetical protein 
LOC100289467          0.037   PREDICTED: hypothetical protein XP_002342401 
SMAD6                 0.037   SMAD family member 6 isoform 1 
BTBD2                 0.037   BTB (POZ) domain containing 2 
SPAG1                 0.037   sperm associated antigen 1 
SPAG1                 0.037   sperm associated antigen 1 
KLF16                 0.033   BTE-binding protein 4 
MAGI2                 0.033   membrane associated guanylate kinase, WW and PDZ dom...
LOC100292979          0.033   PREDICTED: hypothetical protein 
LOC100292150          0.033   PREDICTED: hypothetical protein 
LOC100290530          0.033   PREDICTED: hypothetical protein XP_002347830 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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