Guide to the Human Genome
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Name: LOC100289954 Sequence: fasta or formatted (169aa) NCBI GI: 239747276
Description:

PREDICTED: hypothetical protein XP_002346410

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         17           4
 C cysteine            3.0          5           2
 D aspartate           2.4          4           1
 E glutamate           2.4          4           1
 F phenylalanine       5.3          9           2
 G glycine             2.4          4           1
 H histidine           1.2          2           1
 I isoleucine          4.1          7           1
 K lysine              3.6          6           1
 L leucine            14.2         24           2
 M methionine          2.4          4           1
 N asparagine          2.4          4           1
 P proline            11.2         19           2
 Q glutamine           2.4          4           1
 R arginine            3.0          5           1
 S serine             18.9         32           2
 T threonine           3.6          6           1
 V valine              5.3          9           1
 W tryptophan          1.2          2           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346410 
KIAA1522              0.039   hypothetical protein LOC57648 
IRS2                  0.039   insulin receptor substrate 2 
SRCAP                 0.039   Snf2-related CBP activator protein 
CDC2L5                0.036   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.036   cell division cycle 2-like 5 isoform 2 
FMNL3                 0.032   formin-like 3 isoform 2 
FMNL3                 0.032   formin-like 3 isoform 1 
LOC100131722          0.032   PREDICTED: hypothetical protein 
LOC100132752          0.032   PREDICTED: hypothetical protein 
LOC100131591          0.032   PREDICTED: hypothetical protein 
LOC100131722          0.032   PREDICTED: hypothetical protein 
LOC100132315          0.032   PREDICTED: hypothetical protein 
SETBP1                0.032   SET binding protein 1 isoform a 
SLC2A4RG              0.032   SLC2A4 regulator 
KANK4                 0.032   ankyrin repeat domain 38 
LOC100128869          0.029   PREDICTED: hypothetical protein 
LOC100133002          0.029   PREDICTED: hypothetical protein 
LOC100132117          0.029   PREDICTED: hypothetical protein 
LOC100129002          0.029   PREDICTED: hypothetical protein 
LOC100128869          0.029   PREDICTED: hypothetical protein 
LOC100132829          0.029   PREDICTED: hypothetical protein 
MNT                   0.029   MAX binding protein 
WHSC2                 0.029   Wolf-Hirschhorn syndrome candidate 2 protein 
LOC100290519          0.029   PREDICTED: hypothetical protein XP_002346939 
TNKS                  0.026   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
TEAD3                 0.026   TEA domain family member 3 
PACS1                 0.026   phosphofurin acidic cluster sorting protein 1 
FLJ22184              0.026   PREDICTED: hypothetical protein FLJ22184 
LOC100291632          0.026   PREDICTED: hypothetical protein XP_002344527 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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