Guide to the Human Genome
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Name: LOC100132176 Sequence: fasta or formatted (178aa) NCBI GI: 239747106
Description:

PREDICTED: similar to HDCMB45P

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          8           1
 C cysteine            1.1          2           1
 D aspartate           6.7         12           2
 E glutamate          10.1         18           2
 F phenylalanine       5.1          9           1
 G glycine             2.8          5           1
 H histidine           1.1          2           1
 I isoleucine          5.6         10           1
 K lysine              6.2         11           2
 L leucine             7.9         14           2
 M methionine          5.6         10           1
 N asparagine          3.4          6           1
 P proline             3.4          6           1
 Q glutamine           3.4          6           2
 R arginine            4.5          8           1
 S serine              9.6         17           1
 T threonine          11.2         20           2
 V valine              3.4          6           1
 W tryptophan          1.1          2           1
 Y tyrosine            3.4          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to HDCMB45P 
TIGD1                 0.545   hypothetical protein LOC200765 
CEP72                 0.018   centrosomal protein 72 kDa 
LOC643854             0.012   hypothetical protein LOC643854 
STAT4                 0.012   signal transducer and activator of transcription 4 [H...
MYO5B                 0.009   myosin VB 
PLCB2                 0.009   phospholipase C, beta 2 
KIF11                 0.009   kinesin family member 11 
KIF23                 0.009   kinesin family member 23 isoform 2 
KIF23                 0.009   kinesin family member 23 isoform 1 
CTAGE6                0.009   CTAGE family, member 6 
LOC441294             0.009   hypothetical protein LOC441294 
CTAGE4                0.009   CTAGE family, member 4 
KRT28                 0.009   keratin 25D 
AKT3                  0.009   AKT3 kinase isoform 1 
AKT3                  0.009   AKT3 kinase isoform 2 
PEG3                  0.009   paternally expressed 3 isoform 3 
PEG3                  0.009   paternally expressed 3 isoform 1 
PEG3                  0.009   paternally expressed 3 isoform 2 
PEG3                  0.009   paternally expressed 3 isoform 1 
PEG3                  0.009   paternally expressed 3 isoform 1 
ZNF354C               0.009   zinc finger protein 354C 
CYTSA                 0.006   cytospin A 
CYTSA                 0.006   cytospin A 
KTN1                  0.006   kinectin 1 isoform a 
KTN1                  0.006   kinectin 1 isoform c 
KTN1                  0.006   kinectin 1 isoform a 
ABCA2                 0.006   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA2                 0.006   ATP-binding cassette, sub-family A, member 2 isoform...
ROCK1                 0.006   Rho-associated, coiled-coil containing protein kinase...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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