Guide to the Human Genome
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Name: ZNF354C Sequence: fasta or formatted (554aa) NCBI GI: 30794504
Description:

zinc finger protein 354C

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2         18           1
 C cysteine            5.2         29           1
 D aspartate           2.5         14           1
 E glutamate          10.5         58           3
 F phenylalanine       5.2         29           2
 G glycine             5.8         32           2
 H histidine           5.8         32           1
 I isoleucine          4.7         26           1
 K lysine              9.2         51           2
 L leucine             7.0         39           2
 M methionine          1.6          9           1
 N asparagine          3.2         18           1
 P proline             3.2         18           1
 Q glutamine           6.0         33           2
 R arginine            5.2         29           1
 S serine              7.0         39           3
 T threonine           6.1         34           1
 V valine              3.1         17           1
 W tryptophan          0.7          4           1
 Y tyrosine            4.5         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 354C 
DKFZp686E2433         0.476   hypothetical protein LOC345462 
ZNF184                0.468   zinc finger protein 184 
ZNF570                0.428   zinc finger protein 570 
ZNF135                0.422   zinc finger protein 135 
ZNF85                 0.420   zinc finger protein 85 
ZNF354A               0.418   zinc finger protein 354A 
ZNF354B               0.417   zinc finger protein 354B 
ZNF420                0.415   zinc finger protein 420 
ZNF470                0.412   zinc finger protein 470 
ZNF93                 0.412   zinc finger protein 93 
ZNF471                0.411   zinc finger protein 471 
ZNF595                0.407   zinc finger protein 595 
ZNF543                0.405   zinc finger protein 543 
ZNF66                 0.405   PREDICTED: zinc finger protein 66 
ZNF66                 0.405   PREDICTED: zinc finger protein 66 
ZNF66                 0.405   PREDICTED: zinc finger protein 66 
ZNF665                0.405   zinc finger protein 665 
ZNF583                0.402   zinc finger protein 583 
ZNF583                0.402   zinc finger protein 583 
ZNF583                0.402   zinc finger protein 583 
ZNF737                0.401   PREDICTED: zinc finger protein 737 
ZNF737                0.401   PREDICTED: zinc finger protein 737 
ZNF737                0.401   PREDICTED: zinc finger protein 737 
ZNF527                0.399   zinc finger protein 527 
ZNF624                0.399   zinc finger protein 624 
ZNF737                0.398   zinc finger protein 737 
ZNF189                0.398   zinc finger protein 189 isoform 1 
ZNF626                0.396   zinc finger protein 626 isoform 1 
ZNF311                0.391   zinc finger protein 311 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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