Guide to the Human Genome
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Search of human proteins with 239747021

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747021 PREDICTED: hypothetical protein XP_002343906 [Homo
sapiens]
         (157 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757968 PREDICTED: hypothetical protein [Homo sapiens]           325   1e-89
gi|239747023 PREDICTED: hypothetical protein XP_002343907 [Homo ...   325   1e-89
gi|239747021 PREDICTED: hypothetical protein XP_002343906 [Homo ...   325   1e-89
gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo ...   162   1e-40
gi|239752263 PREDICTED: hypothetical protein XP_002348185 [Homo ...   162   1e-40
gi|239746776 PREDICTED: hypothetical protein XP_002343846 [Homo ...   162   1e-40
gi|116268113 transmembrane protein 99 [Homo sapiens]                   47   9e-06
gi|59853099 dynamin 1 isoform 1 [Homo sapiens]                         39   0.002
gi|158534055 round spermatid basic protein 1-like [Homo sapiens]       39   0.002
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap...    38   0.004
gi|55741655 anoctamin 8 [Homo sapiens]                                 37   0.007
gi|56549117 dynamin 1 isoform 2 [Homo sapiens]                         37   0.007
gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [...    37   0.007
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      36   0.012
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera...    36   0.015
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]         36   0.015
gi|89027871 PREDICTED: hypothetical protein [Homo sapiens]             35   0.020
gi|89027820 PREDICTED: hypothetical protein [Homo sapiens]             35   0.020
gi|51466802 PREDICTED: hypothetical protein [Homo sapiens]             35   0.020
gi|51466800 PREDICTED: hypothetical protein [Homo sapiens]             35   0.020
gi|42658817 PREDICTED: hypothetical protein [Homo sapiens]             35   0.020
gi|169172766 PREDICTED: hypothetical protein LOC389630 [Homo sap...    35   0.020
gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]            35   0.026
gi|239748084 PREDICTED: hypothetical protein [Homo sapiens]            35   0.026
gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo sa...    35   0.026
gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]             35   0.034
gi|51466913 PREDICTED: hypothetical protein [Homo sapiens]             35   0.034
gi|51466907 PREDICTED: hypothetical protein [Homo sapiens]             35   0.034
gi|239742740 PREDICTED: hypothetical protein XP_002342615 [Homo ...    35   0.034
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]            34   0.045

>gi|239757968 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 157

 Score =  325 bits (833), Expect = 1e-89
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP 60
           MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP
Sbjct: 1   MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP 60

Query: 61  PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT 120
           PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT
Sbjct: 61  PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT 120

Query: 121 HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL 157
           HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL
Sbjct: 121 HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL 157


>gi|239747023 PREDICTED: hypothetical protein XP_002343907 [Homo
           sapiens]
          Length = 157

 Score =  325 bits (833), Expect = 1e-89
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP 60
           MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP
Sbjct: 1   MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP 60

Query: 61  PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT 120
           PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT
Sbjct: 61  PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT 120

Query: 121 HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL 157
           HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL
Sbjct: 121 HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL 157


>gi|239747021 PREDICTED: hypothetical protein XP_002343906 [Homo
           sapiens]
          Length = 157

 Score =  325 bits (833), Expect = 1e-89
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP 60
           MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP
Sbjct: 1   MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP 60

Query: 61  PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT 120
           PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT
Sbjct: 61  PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT 120

Query: 121 HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL 157
           HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL
Sbjct: 121 HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL 157


>gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo
           sapiens]
          Length = 225

 Score =  162 bits (409), Expect = 1e-40
 Identities = 77/82 (93%), Positives = 79/82 (96%)

Query: 3   APYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS 62
           +P SVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS
Sbjct: 144 SPDSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS 203

Query: 63  LSQPLSSRVSLHELLLPSRPPW 84
           LSQPLSSRVSL+ELL PS PPW
Sbjct: 204 LSQPLSSRVSLYELLFPSWPPW 225



 Score = 33.9 bits (76), Expect = 0.058
 Identities = 43/139 (30%), Positives = 57/139 (41%), Gaps = 21/139 (15%)

Query: 2   GAPYSVVPPARSPDS-GGRAGSPRSL-----APPAAARAEGAPGWAGRWGR-----VPLA 50
           G+P SVV P+RSPDS     GSP S+     +P +     G+P       R     VP  
Sbjct: 43  GSPDSVVLPSRSPDSVVPPPGSPDSVVLPPRSPDSVVPPPGSPDSVVLPPRSPDSVVPPP 102

Query: 51  RSPPQV---PSRPPSLSQPLSSRVSL-------HELLLPSRPPWVTHLLLRATGARLRGG 100
           RSP  V   P  P S+  P  S  S+         ++LP R P       R+  +  R G
Sbjct: 103 RSPDSVVPPPGSPDSVVLPPRSPDSVVPPPGSPDSVVLPPRSPDSVVPPARSPDSGGRAG 162

Query: 101 LPLSCLLGLGRRSRGSRLW 119
            P S       R+ G+  W
Sbjct: 163 SPRSLAPPAAARAEGAPGW 181



 Score = 28.1 bits (61), Expect = 3.2
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 3   APYSVVPPARSPDSGG-RAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPP 61
           +P SVV P+RSPDS     GSP S+  P+ +     P        V   RSP  V   P 
Sbjct: 24  SPDSVVLPSRSPDSVVLPPGSPDSVVLPSRSPDSVVPPPGSPDSVVLPPRSPDSVVPPPG 83

Query: 62  SLSQPLSSRVSLHELLLPSRPP 83
           S    +    S   ++ P R P
Sbjct: 84  SPDSVVLPPRSPDSVVPPPRSP 105


>gi|239752263 PREDICTED: hypothetical protein XP_002348185 [Homo
           sapiens]
          Length = 220

 Score =  162 bits (409), Expect = 1e-40
 Identities = 77/82 (93%), Positives = 79/82 (96%)

Query: 3   APYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS 62
           +P SVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS
Sbjct: 139 SPDSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS 198

Query: 63  LSQPLSSRVSLHELLLPSRPPW 84
           LSQPLSSRVSL+ELL PS PPW
Sbjct: 199 LSQPLSSRVSLYELLFPSWPPW 220


>gi|239746776 PREDICTED: hypothetical protein XP_002343846 [Homo
           sapiens]
          Length = 210

 Score =  162 bits (409), Expect = 1e-40
 Identities = 77/82 (93%), Positives = 79/82 (96%)

Query: 3   APYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS 62
           +P SVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS
Sbjct: 129 SPDSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS 188

Query: 63  LSQPLSSRVSLHELLLPSRPPW 84
           LSQPLSSRVSL+ELL PS PPW
Sbjct: 189 LSQPLSSRVSLYELLFPSWPPW 210



 Score = 33.1 bits (74), Expect = 0.100
 Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 5   YSVVPPARSPDS-GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPSL 63
           +SVV P+RSPDS     GSP S+ PP  +              VP   SP  V   P S 
Sbjct: 61  HSVVLPSRSPDSVVPPPGSPDSVVPPPRSPD----------SVVPPPGSPDSVVLPPRSP 110

Query: 64  SQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLW 119
              +    S   ++LP R P       R+  +  R G P S       R+ G+  W
Sbjct: 111 DSVVPPPGSPDSVVLPPRSPDSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGW 166


>gi|116268113 transmembrane protein 99 [Homo sapiens]
          Length = 258

 Score = 46.6 bits (109), Expect = 9e-06
 Identities = 48/125 (38%), Positives = 60/125 (48%), Gaps = 16/125 (12%)

Query: 29  PAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPSLSQPLSSRVSLHELLLPSRPPWVTHL 88
           P AA +   P  AG  G+  LA S PQV  +P    +  SS +SL EL    R       
Sbjct: 27  PTAAHSVRVPHSAGHCGQRVLACSLPQVFLKPWIFVEHFSSWLSL-ELFSFLR---YLGT 82

Query: 89  LLRATGARLRGGLPLSCLLGLG------RRSRGSRLWTHLPQLNVSQRSTNSRL------ 136
           LL A G RLR GL L CLLG+G        + GS    HL Q+++SQ S  +        
Sbjct: 83  LLCACGHRLREGLLLPCLLGVGSWLLFNNWTGGSWFSLHLQQVSLSQGSHVAAFLPEAIG 142

Query: 137 PGLPV 141
           PG+PV
Sbjct: 143 PGVPV 147


>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
          Length = 864

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 33/76 (43%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 8   VPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVP-LARSPPQVPSRPPSLSQP 66
           VPPAR P S G A  P    PPA +   GAP    R G  P     PPQVPSRP      
Sbjct: 788 VPPAR-PGSRGPAPGP----PPAGSALGGAPPVPSRPGASPDPFGPPPQVPSRPNRAPPG 842

Query: 67  LSSRVSLHELLLPSRP 82
           + SR        PSRP
Sbjct: 843 VPSRSGQAS---PSRP 855


>gi|158534055 round spermatid basic protein 1-like [Homo sapiens]
          Length = 846

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 19/101 (18%)

Query: 10  PARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSR---------- 59
           P R    GG  G+ R L PPAA   + + G    W   PL+ +P    SR          
Sbjct: 53  PRRVNGEGGSGGNSRQLQPPAAPSPQ-SYGSPASWSFAPLSAAPSPSSSRSSFSFSAGTA 111

Query: 60  -----PPSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGA 95
                  SLSQP+  ++ +   LL ++P    HLLL A  A
Sbjct: 112 VPSSASASLSQPVPRKLLVPPTLLHAQP---HHLLLPAAAA 149


>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
           sapiens]
          Length = 254

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 3   APYSVVPPARSPDSGGR-AGSPRSLAPPAAARAEGAPGWAGRWGRVPLA---RSPPQVPS 58
           AP +V P A SP +    A SP + AP AA+ A  AP         P A   +S  + P+
Sbjct: 120 APAAVCPAAASPSAASLCAASPTAAAPAAASPAAAAPLAVNPAAAAPAAACVQSVAESPA 179

Query: 59  RPPSLSQPLSS 69
            P +++QP+SS
Sbjct: 180 TPLAIAQPVSS 190



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 4   PYSVVPPA-RSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS 62
           P +V P A R P +   A SP ++AP A   A  +P  A      P A +P    +  P+
Sbjct: 96  PLAVAPAAVRRPAATLGAASPAAVAPAAVCPAAASPSAASLCAASPTAAAP---AAASPA 152

Query: 63  LSQPLS 68
            + PL+
Sbjct: 153 AAAPLA 158



 Score = 26.9 bits (58), Expect = 7.1
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 12 RSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS----RPPSLSQPL 67
          R P +   A  P +  PPAAA A   P  AG      L  + P VP+    RPP    P 
Sbjct: 15 RRPAAAPAAVRPPAAGPPAAAPAVVYPAAAGP-SAASLCAANPLVPAPAAVRPPVAGPPA 73

Query: 68 SS 69
          ++
Sbjct: 74 TA 75


>gi|55741655 anoctamin 8 [Homo sapiens]
          Length = 1232

 Score = 37.0 bits (84), Expect = 0.007
 Identities = 28/88 (31%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 1    MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVP-----LARSPPQ 55
            +GAP      +RSP        PR   PPA       P   G  G  P      A  PP 
Sbjct: 1117 VGAPALRTRRSRSPAPPPPMPLPRPPTPPAGCWQWDGPWGCGGEGAAPRQALAAAECPPC 1176

Query: 56   VPSRPPSLSQPLSSRVSLHELLLPSRPP 83
              + PP   QPL    S + L  P  PP
Sbjct: 1177 AMAGPPPAPQPLPGDASFYSLPPPPLPP 1204


>gi|56549117 dynamin 1 isoform 2 [Homo sapiens]
          Length = 851

 Score = 37.0 bits (84), Expect = 0.007
 Identities = 27/54 (50%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 8   VPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVP-LARSPPQVPSRP 60
           VPPAR P S G A  P    PPA +   GAP    R G  P     PPQVPSRP
Sbjct: 788 VPPAR-PGSRGPAPGP----PPAGSALGGAPPVPSRPGASPDPFGPPPQVPSRP 836


>gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [Homo
            sapiens]
          Length = 1233

 Score = 37.0 bits (84), Expect = 0.007
 Identities = 29/78 (37%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 10   PARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGR-WGRVPLARSPPQVPSRPPSLSQPLS 68
            P  SP    R+G    L  P         GW     GR  L R  PQ P RPP+   PLS
Sbjct: 930  PPPSPCPTPRSGPSPCLPTPDPPPEPSPTGWGPPDGGRAALVRRAPQPPGRPPTPGPPLS 989

Query: 69   --SRVSLHELLLPSRPPW 84
              SRVS        RP W
Sbjct: 990  DVSRVS-------RRPAW 1000


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 36.2 bits (82), Expect = 0.012
 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 10  PARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSP--PQVPSRPP 61
           P     + G AG+P +   P A  A GAPG AG  G  P AR P  PQ P  PP
Sbjct: 375 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPG-FPGARGPSGPQGPGGPP 427



 Score = 31.2 bits (69), Expect = 0.38
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 9   PPARSPDSG--GRAGSPRSLAPPAAARAEGAPGWAG 42
           PP ++ D G  G+ G P    PP    A G PG AG
Sbjct: 225 PPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAG 260



 Score = 30.4 bits (67), Expect = 0.65
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 2    GAPYSVVPPAR--SPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGR 46
            GAP +   P R  SP + G  G      PP A  A GAPG  G  G+
Sbjct: 1016 GAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGK 1062



 Score = 29.6 bits (65), Expect = 1.1
 Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 2   GAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRV--PLARSPPQVPSR 59
           G P  V PP   P   G  GSP +  P  A    G  G AG+ G V  P  R     P  
Sbjct: 917 GRPGEVGPPG-PPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGL 975

Query: 60  PPSLSQP 66
           P    +P
Sbjct: 976 PGPSGEP 982



 Score = 28.9 bits (63), Expect = 1.9
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 2    GAPYSVVPP--ARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSR 59
            G P  + PP  A  P   GR G+P +   P    + GA G  G  G       PP  P  
Sbjct: 995  GPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETG----PAGPPGAPGA 1050

Query: 60   P 60
            P
Sbjct: 1051 P 1051



 Score = 28.5 bits (62), Expect = 2.5
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 2    GAPYSVVPPARSPDSG--GRAGSPRSLAPPAAARAEGAPGWAGRWGR 46
            G P    P   S + G  G  G P    PP  +  EGAPG  G  GR
Sbjct: 980  GEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGR 1026



 Score = 27.7 bits (60), Expect = 4.2
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 10  PARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRV-PLARSPPQVPSRPP 61
           PA  P   G  G+P +     +A   GA G+ G  GRV P   S    P  PP
Sbjct: 846 PAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP 898



 Score = 26.6 bits (57), Expect = 9.3
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 10  PARSPDSGGRAGSPRSLAP---PAAARAEGAPGWAGRWGR--VPLARSP--PQVPSRPP 61
           P   P S G  G+P  + P   P      GAPG AG  G      A  P  P  P+ PP
Sbjct: 285 PKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP 343



 Score = 26.6 bits (57), Expect = 9.3
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 2   GAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPP 61
           G P +V P  +  ++G  A  P   A PA  R E  P  +  +  +P    PP    +P 
Sbjct: 602 GPPGAVGPAGKDGEAG--AQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPG 659

Query: 62  SLSQP 66
               P
Sbjct: 660 EQGVP 664


>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
           4 [Homo sapiens]
          Length = 1039

 Score = 35.8 bits (81), Expect = 0.015
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 9   PPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRV-PLARSPPQVPSRPPSLSQPL 67
           PP      G R G P++  P   ARA+   G  GR G+   L  + P V S   S ++P+
Sbjct: 568 PPRPPRPHGRRTGGPQATQPRPPARAQATQG--GREGQARTLGPAAPTVDSNLSSEARPV 625

Query: 68  SSRVSLHELLLPSRP 82
           +S +SL ++  P  P
Sbjct: 626 TSFLSLSQVSGPQLP 640


>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
          Length = 1690

 Score = 35.8 bits (81), Expect = 0.015
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 13  SPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP 60
           SP + G  G P  + PP  A  +G PG  GR    P A  PP +P  P
Sbjct: 847 SPGAPGGKGQPGDVGPPGPAGMKGLPGLPGR----PGAHGPPGLPGIP 890



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 2    GAPYSVVPPA------RSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPP 54
            G P S  PP       R+P      G P    PP      GAPG  G  G V L R  P
Sbjct: 1233 GPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEP 1291



 Score = 28.9 bits (63), Expect = 1.9
 Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 13/78 (16%)

Query: 2    GAPYSVVPPARSPDSGGRA-----GSPRS-LAPPAAARAEGAPGWAGRWGR-----VPLA 50
            G P S  PP  S   G R      G P S   PP      G+PG  G +G      +P  
Sbjct: 1051 GEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQGLPGI 1110

Query: 51   RSPPQVPSR--PPSLSQP 66
            + P   P R  PP  S P
Sbjct: 1111 QGPRGSPGRPGPPGSSGP 1128



 Score = 28.9 bits (63), Expect = 1.9
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 16   SGGRAGSPRSLAPPAAARAEGAPGWAGRWGRV--PLAR---SPPQVPSRPPSLSQPLSS 69
            S GR G P S  PP      G PG  G+ G +  P  R     P +P  PP +  P  S
Sbjct: 1116 SPGRPGPPGSSGPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPGIPG-PPGIKGPSGS 1173



 Score = 26.6 bits (57), Expect = 9.3
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 9   PPARSPDSG----GRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSP 53
           PP R  +SG    G  G P    P     + G+PG+ G  G + L   P
Sbjct: 286 PPGRKGESGIGAKGEKGIPGFPGPRGDPGSYGSPGFPGLKGELGLVGDP 334



 Score = 26.6 bits (57), Expect = 9.3
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 2   GAPYSVVPPARSPDSG-----GRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQV 56
           G P    PP  S + G     G+ G P     P A   +G PG  G  G   + +  P +
Sbjct: 816 GFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGM-KGLPGL 874

Query: 57  PSRPPSLSQP 66
           P RP +   P
Sbjct: 875 PGRPGAHGPP 884


>gi|89027871 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 464

 Score = 35.4 bits (80), Expect = 0.020
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 10/62 (16%)

Query: 10  PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
           P + P+S   GG  G+P +L PP AA  E  P  + + GR    R+P QVPS  R P  S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSVDRQPPHS 366

Query: 65  QP 66
           +P
Sbjct: 367 RP 368


>gi|89027820 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 464

 Score = 35.4 bits (80), Expect = 0.020
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 10/62 (16%)

Query: 10  PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
           P + P+S   GG  G+P +L PP AA  E  P  + + GR    R+P QVPS  R P  S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSVDRQPPHS 366

Query: 65  QP 66
           +P
Sbjct: 367 RP 368


>gi|51466802 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 464

 Score = 35.4 bits (80), Expect = 0.020
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 10/62 (16%)

Query: 10  PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
           P + P+S   GG  G+P +L PP AA  E  P  + + GR    R+P QVPS  R P  S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSVDRQPPHS 366

Query: 65  QP 66
           +P
Sbjct: 367 RP 368


>gi|51466800 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 464

 Score = 35.4 bits (80), Expect = 0.020
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 10/62 (16%)

Query: 10  PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
           P + P+S   GG  G+P +L PP AA  E  P  + + GR    R+P QVPS  R P  S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSVDRQPPHS 366

Query: 65  QP 66
           +P
Sbjct: 367 RP 368


>gi|42658817 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 464

 Score = 35.4 bits (80), Expect = 0.020
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 10/62 (16%)

Query: 10  PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
           P + P+S   GG  G+P +L PP AA  E  P  + + GR    R+P QVPS  R P  S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSVERQPPHS 366

Query: 65  QP 66
           +P
Sbjct: 367 RP 368


>gi|169172766 PREDICTED: hypothetical protein LOC389630 [Homo
           sapiens]
          Length = 464

 Score = 35.4 bits (80), Expect = 0.020
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 10/62 (16%)

Query: 10  PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
           P + P+S   GG  G+P +L PP AA  E  P  + + GR    R+P QVPS  R P  S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSVDRQPPHS 366

Query: 65  QP 66
           +P
Sbjct: 367 RP 368


>gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 423

 Score = 35.0 bits (79), Expect = 0.026
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 10  PARSPDSGGRAGSPRSLAPPAAARA--EGAPGWAGRWGRVPLARSPPQVPSRPPSL-SQP 66
           P R PD+ G AG  R+  PPAA  A  EG     GR  R P  R+  +  ++   L +  
Sbjct: 281 PGRGPDASGAAGRSRA-PPPAAVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTAT 339

Query: 67  LSSRVSLHELLLPS 80
           L+  +  H LLLPS
Sbjct: 340 LACSLPPHALLLPS 353


>gi|239748084 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 423

 Score = 35.0 bits (79), Expect = 0.026
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 10  PARSPDSGGRAGSPRSLAPPAAARA--EGAPGWAGRWGRVPLARSPPQVPSRPPSL-SQP 66
           P R PD+ G AG  R+  PPAA  A  EG     GR  R P  R+  +  ++   L +  
Sbjct: 281 PGRGPDASGAAGRSRA-PPPAAVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTAT 339

Query: 67  LSSRVSLHELLLPS 80
           L+  +  H LLLPS
Sbjct: 340 LACSLPPHALLLPS 353


>gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo
          sapiens]
          Length = 1194

 Score = 35.0 bits (79), Expect = 0.026
 Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 24/93 (25%)

Query: 14 PDSGGRAGSPRSLAP---PAAARAEGAP--------------GWAGRWGRVPLARSPPQV 56
          PDSG R G  R LA    PA ARA G P              G  G  GR     SPP+ 
Sbjct: 6  PDSGARRGG-RGLADHSFPAGARAPGQPPSRGAAYRRACPRDGERGGGGRPRQQVSPPRS 64

Query: 57 PSRPPSLSQPLSSRV------SLHELLLPSRPP 83
          P R P   Q  + R+      SL  L + ++PP
Sbjct: 65 PQREPRGGQLRTPRMRPSCSRSLESLRVGAKPP 97


>gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 212

 Score = 34.7 bits (78), Expect = 0.034
 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 25/110 (22%)

Query: 12  RSPDSGGRAGSPRSLAPPAAARA----EGAPGWAGRWGRVPLARSPPQVPSRPP-SLSQP 66
           R P+ GG    P + +P A++RA    E +PG        P +  P  +PS PP +  +P
Sbjct: 110 RRPEPGGARSRPVAASPAASSRARSRPESSPG-------APGSSVPALLPSLPPLAAPRP 162

Query: 67  LSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGS 116
           LS+R  L       RPP    L L        G  P +   G  R+ RGS
Sbjct: 163 LSARPRL-------RPPQPQPLALTV------GNGPRAPPAGGSRQPRGS 199


>gi|51466913 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 464

 Score = 34.7 bits (78), Expect = 0.034
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 10  PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
           P + P+S   GG  G+P +L PP AA  E  P  + + GR    R+P QVPS  R P  S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSVDRQPPHS 366

Query: 65  QP 66
            P
Sbjct: 367 TP 368


>gi|51466907 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 464

 Score = 34.7 bits (78), Expect = 0.034
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 10  PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
           P + P+S   GG  G+P +L PP AA  E  P  + + GR    R+P QVPS  R P  S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSIDRQPPHS 366

Query: 65  QP 66
            P
Sbjct: 367 TP 368


>gi|239742740 PREDICTED: hypothetical protein XP_002342615 [Homo
           sapiens]
          Length = 159

 Score = 34.7 bits (78), Expect = 0.034
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 14/75 (18%)

Query: 6   SVVPPARSPDSGGR----AGSPRSLAPPAAARAEGA----------PGWAGRWGRVPLAR 51
           SV PP R+P  G       GSPR    PAA R+ G+           G +G       + 
Sbjct: 38  SVRPPGRAPGPGTLFLLGKGSPRLAQHPAARRSHGSRLPRTSGSPEEGVSGHGPAAAASL 97

Query: 52  SPPQVPSRPPSLSQP 66
              QVP+ PPS +QP
Sbjct: 98  PRAQVPTPPPSHAQP 112


>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 370

 Score = 34.3 bits (77), Expect = 0.045
 Identities = 36/104 (34%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 8   VPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPSLSQPL 67
           +P A +  +G +    R LA P  +RA    G A R  R  L   PP+   RPP L+   
Sbjct: 85  LPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR-RRAHLTGGPPR--RRPPRLAAAH 141

Query: 68  SSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGR 111
               S    L P      T L LR   ARL  GLP +   GL R
Sbjct: 142 GLPASEAPGLRPDSAR--TRLRLRLASARLPRGLPPAPAAGLWR 183


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,195,044
Number of Sequences: 37866
Number of extensions: 458143
Number of successful extensions: 4940
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 453
Number of HSP's that attempted gapping in prelim test: 3773
Number of HSP's gapped (non-prelim): 1599
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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