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Search of human proteins with 239747021
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747021 PREDICTED: hypothetical protein XP_002343906 [Homo
sapiens]
(157 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757968 PREDICTED: hypothetical protein [Homo sapiens] 325 1e-89
gi|239747023 PREDICTED: hypothetical protein XP_002343907 [Homo ... 325 1e-89
gi|239747021 PREDICTED: hypothetical protein XP_002343906 [Homo ... 325 1e-89
gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo ... 162 1e-40
gi|239752263 PREDICTED: hypothetical protein XP_002348185 [Homo ... 162 1e-40
gi|239746776 PREDICTED: hypothetical protein XP_002343846 [Homo ... 162 1e-40
gi|116268113 transmembrane protein 99 [Homo sapiens] 47 9e-06
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 39 0.002
gi|158534055 round spermatid basic protein 1-like [Homo sapiens] 39 0.002
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap... 38 0.004
gi|55741655 anoctamin 8 [Homo sapiens] 37 0.007
gi|56549117 dynamin 1 isoform 2 [Homo sapiens] 37 0.007
gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [... 37 0.007
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 36 0.012
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 36 0.015
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 36 0.015
gi|89027871 PREDICTED: hypothetical protein [Homo sapiens] 35 0.020
gi|89027820 PREDICTED: hypothetical protein [Homo sapiens] 35 0.020
gi|51466802 PREDICTED: hypothetical protein [Homo sapiens] 35 0.020
gi|51466800 PREDICTED: hypothetical protein [Homo sapiens] 35 0.020
gi|42658817 PREDICTED: hypothetical protein [Homo sapiens] 35 0.020
gi|169172766 PREDICTED: hypothetical protein LOC389630 [Homo sap... 35 0.020
gi|239753576 PREDICTED: hypothetical protein [Homo sapiens] 35 0.026
gi|239748084 PREDICTED: hypothetical protein [Homo sapiens] 35 0.026
gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo sa... 35 0.026
gi|89040432 PREDICTED: hypothetical protein [Homo sapiens] 35 0.034
gi|51466913 PREDICTED: hypothetical protein [Homo sapiens] 35 0.034
gi|51466907 PREDICTED: hypothetical protein [Homo sapiens] 35 0.034
gi|239742740 PREDICTED: hypothetical protein XP_002342615 [Homo ... 35 0.034
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 34 0.045
>gi|239757968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 325 bits (833), Expect = 1e-89
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP 60
MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP
Sbjct: 1 MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP 60
Query: 61 PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT 120
PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT
Sbjct: 61 PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT 120
Query: 121 HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL 157
HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL
Sbjct: 121 HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL 157
>gi|239747023 PREDICTED: hypothetical protein XP_002343907 [Homo
sapiens]
Length = 157
Score = 325 bits (833), Expect = 1e-89
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP 60
MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP
Sbjct: 1 MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP 60
Query: 61 PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT 120
PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT
Sbjct: 61 PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT 120
Query: 121 HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL 157
HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL
Sbjct: 121 HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL 157
>gi|239747021 PREDICTED: hypothetical protein XP_002343906 [Homo
sapiens]
Length = 157
Score = 325 bits (833), Expect = 1e-89
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP 60
MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP
Sbjct: 1 MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP 60
Query: 61 PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT 120
PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT
Sbjct: 61 PSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLWT 120
Query: 121 HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL 157
HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL
Sbjct: 121 HLPQLNVSQRSTNSRLPGLPVYTPLAIPGRDDHAPEL 157
>gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo
sapiens]
Length = 225
Score = 162 bits (409), Expect = 1e-40
Identities = 77/82 (93%), Positives = 79/82 (96%)
Query: 3 APYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS 62
+P SVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS
Sbjct: 144 SPDSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS 203
Query: 63 LSQPLSSRVSLHELLLPSRPPW 84
LSQPLSSRVSL+ELL PS PPW
Sbjct: 204 LSQPLSSRVSLYELLFPSWPPW 225
Score = 33.9 bits (76), Expect = 0.058
Identities = 43/139 (30%), Positives = 57/139 (41%), Gaps = 21/139 (15%)
Query: 2 GAPYSVVPPARSPDS-GGRAGSPRSL-----APPAAARAEGAPGWAGRWGR-----VPLA 50
G+P SVV P+RSPDS GSP S+ +P + G+P R VP
Sbjct: 43 GSPDSVVLPSRSPDSVVPPPGSPDSVVLPPRSPDSVVPPPGSPDSVVLPPRSPDSVVPPP 102
Query: 51 RSPPQV---PSRPPSLSQPLSSRVSL-------HELLLPSRPPWVTHLLLRATGARLRGG 100
RSP V P P S+ P S S+ ++LP R P R+ + R G
Sbjct: 103 RSPDSVVPPPGSPDSVVLPPRSPDSVVPPPGSPDSVVLPPRSPDSVVPPARSPDSGGRAG 162
Query: 101 LPLSCLLGLGRRSRGSRLW 119
P S R+ G+ W
Sbjct: 163 SPRSLAPPAAARAEGAPGW 181
Score = 28.1 bits (61), Expect = 3.2
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 3 APYSVVPPARSPDSGG-RAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPP 61
+P SVV P+RSPDS GSP S+ P+ + P V RSP V P
Sbjct: 24 SPDSVVLPSRSPDSVVLPPGSPDSVVLPSRSPDSVVPPPGSPDSVVLPPRSPDSVVPPPG 83
Query: 62 SLSQPLSSRVSLHELLLPSRPP 83
S + S ++ P R P
Sbjct: 84 SPDSVVLPPRSPDSVVPPPRSP 105
>gi|239752263 PREDICTED: hypothetical protein XP_002348185 [Homo
sapiens]
Length = 220
Score = 162 bits (409), Expect = 1e-40
Identities = 77/82 (93%), Positives = 79/82 (96%)
Query: 3 APYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS 62
+P SVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS
Sbjct: 139 SPDSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS 198
Query: 63 LSQPLSSRVSLHELLLPSRPPW 84
LSQPLSSRVSL+ELL PS PPW
Sbjct: 199 LSQPLSSRVSLYELLFPSWPPW 220
>gi|239746776 PREDICTED: hypothetical protein XP_002343846 [Homo
sapiens]
Length = 210
Score = 162 bits (409), Expect = 1e-40
Identities = 77/82 (93%), Positives = 79/82 (96%)
Query: 3 APYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS 62
+P SVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS
Sbjct: 129 SPDSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS 188
Query: 63 LSQPLSSRVSLHELLLPSRPPW 84
LSQPLSSRVSL+ELL PS PPW
Sbjct: 189 LSQPLSSRVSLYELLFPSWPPW 210
Score = 33.1 bits (74), Expect = 0.100
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 5 YSVVPPARSPDS-GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPSL 63
+SVV P+RSPDS GSP S+ PP + VP SP V P S
Sbjct: 61 HSVVLPSRSPDSVVPPPGSPDSVVPPPRSPD----------SVVPPPGSPDSVVLPPRSP 110
Query: 64 SQPLSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGSRLW 119
+ S ++LP R P R+ + R G P S R+ G+ W
Sbjct: 111 DSVVPPPGSPDSVVLPPRSPDSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGW 166
>gi|116268113 transmembrane protein 99 [Homo sapiens]
Length = 258
Score = 46.6 bits (109), Expect = 9e-06
Identities = 48/125 (38%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 29 PAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPSLSQPLSSRVSLHELLLPSRPPWVTHL 88
P AA + P AG G+ LA S PQV +P + SS +SL EL R
Sbjct: 27 PTAAHSVRVPHSAGHCGQRVLACSLPQVFLKPWIFVEHFSSWLSL-ELFSFLR---YLGT 82
Query: 89 LLRATGARLRGGLPLSCLLGLG------RRSRGSRLWTHLPQLNVSQRSTNSRL------ 136
LL A G RLR GL L CLLG+G + GS HL Q+++SQ S +
Sbjct: 83 LLCACGHRLREGLLLPCLLGVGSWLLFNNWTGGSWFSLHLQQVSLSQGSHVAAFLPEAIG 142
Query: 137 PGLPV 141
PG+PV
Sbjct: 143 PGVPV 147
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 38.5 bits (88), Expect = 0.002
Identities = 33/76 (43%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 8 VPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVP-LARSPPQVPSRPPSLSQP 66
VPPAR P S G A P PPA + GAP R G P PPQVPSRP
Sbjct: 788 VPPAR-PGSRGPAPGP----PPAGSALGGAPPVPSRPGASPDPFGPPPQVPSRPNRAPPG 842
Query: 67 LSSRVSLHELLLPSRP 82
+ SR PSRP
Sbjct: 843 VPSRSGQAS---PSRP 855
>gi|158534055 round spermatid basic protein 1-like [Homo sapiens]
Length = 846
Score = 38.5 bits (88), Expect = 0.002
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 10 PARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSR---------- 59
P R GG G+ R L PPAA + + G W PL+ +P SR
Sbjct: 53 PRRVNGEGGSGGNSRQLQPPAAPSPQ-SYGSPASWSFAPLSAAPSPSSSRSSFSFSAGTA 111
Query: 60 -----PPSLSQPLSSRVSLHELLLPSRPPWVTHLLLRATGA 95
SLSQP+ ++ + LL ++P HLLL A A
Sbjct: 112 VPSSASASLSQPVPRKLLVPPTLLHAQP---HHLLLPAAAA 149
>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
sapiens]
Length = 254
Score = 37.7 bits (86), Expect = 0.004
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 3 APYSVVPPARSPDSGGR-AGSPRSLAPPAAARAEGAPGWAGRWGRVPLA---RSPPQVPS 58
AP +V P A SP + A SP + AP AA+ A AP P A +S + P+
Sbjct: 120 APAAVCPAAASPSAASLCAASPTAAAPAAASPAAAAPLAVNPAAAAPAAACVQSVAESPA 179
Query: 59 RPPSLSQPLSS 69
P +++QP+SS
Sbjct: 180 TPLAIAQPVSS 190
Score = 29.3 bits (64), Expect = 1.4
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 4 PYSVVPPA-RSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPS 62
P +V P A R P + A SP ++AP A A +P A P A +P + P+
Sbjct: 96 PLAVAPAAVRRPAATLGAASPAAVAPAAVCPAAASPSAASLCAASPTAAAP---AAASPA 152
Query: 63 LSQPLS 68
+ PL+
Sbjct: 153 AAAPLA 158
Score = 26.9 bits (58), Expect = 7.1
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 12 RSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS----RPPSLSQPL 67
R P + A P + PPAAA A P AG L + P VP+ RPP P
Sbjct: 15 RRPAAAPAAVRPPAAGPPAAAPAVVYPAAAGP-SAASLCAANPLVPAPAAVRPPVAGPPA 73
Query: 68 SS 69
++
Sbjct: 74 TA 75
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 37.0 bits (84), Expect = 0.007
Identities = 28/88 (31%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 1 MGAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVP-----LARSPPQ 55
+GAP +RSP PR PPA P G G P A PP
Sbjct: 1117 VGAPALRTRRSRSPAPPPPMPLPRPPTPPAGCWQWDGPWGCGGEGAAPRQALAAAECPPC 1176
Query: 56 VPSRPPSLSQPLSSRVSLHELLLPSRPP 83
+ PP QPL S + L P PP
Sbjct: 1177 AMAGPPPAPQPLPGDASFYSLPPPPLPP 1204
>gi|56549117 dynamin 1 isoform 2 [Homo sapiens]
Length = 851
Score = 37.0 bits (84), Expect = 0.007
Identities = 27/54 (50%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 8 VPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVP-LARSPPQVPSRP 60
VPPAR P S G A P PPA + GAP R G P PPQVPSRP
Sbjct: 788 VPPAR-PGSRGPAPGP----PPAGSALGGAPPVPSRPGASPDPFGPPPQVPSRP 836
>gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [Homo
sapiens]
Length = 1233
Score = 37.0 bits (84), Expect = 0.007
Identities = 29/78 (37%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 10 PARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGR-WGRVPLARSPPQVPSRPPSLSQPLS 68
P SP R+G L P GW GR L R PQ P RPP+ PLS
Sbjct: 930 PPPSPCPTPRSGPSPCLPTPDPPPEPSPTGWGPPDGGRAALVRRAPQPPGRPPTPGPPLS 989
Query: 69 --SRVSLHELLLPSRPPW 84
SRVS RP W
Sbjct: 990 DVSRVS-------RRPAW 1000
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 36.2 bits (82), Expect = 0.012
Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 10 PARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSP--PQVPSRPP 61
P + G AG+P + P A A GAPG AG G P AR P PQ P PP
Sbjct: 375 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPG-FPGARGPSGPQGPGGPP 427
Score = 31.2 bits (69), Expect = 0.38
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 9 PPARSPDSG--GRAGSPRSLAPPAAARAEGAPGWAG 42
PP ++ D G G+ G P PP A G PG AG
Sbjct: 225 PPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAG 260
Score = 30.4 bits (67), Expect = 0.65
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 2 GAPYSVVPPAR--SPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGR 46
GAP + P R SP + G G PP A A GAPG G G+
Sbjct: 1016 GAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGK 1062
Score = 29.6 bits (65), Expect = 1.1
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 2 GAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRV--PLARSPPQVPSR 59
G P V PP P G GSP + P A G G AG+ G V P R P
Sbjct: 917 GRPGEVGPPG-PPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGL 975
Query: 60 PPSLSQP 66
P +P
Sbjct: 976 PGPSGEP 982
Score = 28.9 bits (63), Expect = 1.9
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 2 GAPYSVVPP--ARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSR 59
G P + PP A P GR G+P + P + GA G G G PP P
Sbjct: 995 GPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETG----PAGPPGAPGA 1050
Query: 60 P 60
P
Sbjct: 1051 P 1051
Score = 28.5 bits (62), Expect = 2.5
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 2 GAPYSVVPPARSPDSG--GRAGSPRSLAPPAAARAEGAPGWAGRWGR 46
G P P S + G G G P PP + EGAPG G GR
Sbjct: 980 GEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGR 1026
Score = 27.7 bits (60), Expect = 4.2
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 10 PARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRV-PLARSPPQVPSRPP 61
PA P G G+P + +A GA G+ G GRV P S P PP
Sbjct: 846 PAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP 898
Score = 26.6 bits (57), Expect = 9.3
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 10 PARSPDSGGRAGSPRSLAP---PAAARAEGAPGWAGRWGR--VPLARSP--PQVPSRPP 61
P P S G G+P + P P GAPG AG G A P P P+ PP
Sbjct: 285 PKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP 343
Score = 26.6 bits (57), Expect = 9.3
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 2 GAPYSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPP 61
G P +V P + ++G A P A PA R E P + + +P PP +P
Sbjct: 602 GPPGAVGPAGKDGEAG--AQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPG 659
Query: 62 SLSQP 66
P
Sbjct: 660 EQGVP 664
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
4 [Homo sapiens]
Length = 1039
Score = 35.8 bits (81), Expect = 0.015
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 9 PPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRV-PLARSPPQVPSRPPSLSQPL 67
PP G R G P++ P ARA+ G GR G+ L + P V S S ++P+
Sbjct: 568 PPRPPRPHGRRTGGPQATQPRPPARAQATQG--GREGQARTLGPAAPTVDSNLSSEARPV 625
Query: 68 SSRVSLHELLLPSRP 82
+S +SL ++ P P
Sbjct: 626 TSFLSLSQVSGPQLP 640
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 35.8 bits (81), Expect = 0.015
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 13 SPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRP 60
SP + G G P + PP A +G PG GR P A PP +P P
Sbjct: 847 SPGAPGGKGQPGDVGPPGPAGMKGLPGLPGR----PGAHGPPGLPGIP 890
Score = 29.3 bits (64), Expect = 1.4
Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 2 GAPYSVVPPA------RSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPP 54
G P S PP R+P G P PP GAPG G G V L R P
Sbjct: 1233 GPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEP 1291
Score = 28.9 bits (63), Expect = 1.9
Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 2 GAPYSVVPPARSPDSGGRA-----GSPRS-LAPPAAARAEGAPGWAGRWGR-----VPLA 50
G P S PP S G R G P S PP G+PG G +G +P
Sbjct: 1051 GEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQGLPGI 1110
Query: 51 RSPPQVPSR--PPSLSQP 66
+ P P R PP S P
Sbjct: 1111 QGPRGSPGRPGPPGSSGP 1128
Score = 28.9 bits (63), Expect = 1.9
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 16 SGGRAGSPRSLAPPAAARAEGAPGWAGRWGRV--PLAR---SPPQVPSRPPSLSQPLSS 69
S GR G P S PP G PG G+ G + P R P +P PP + P S
Sbjct: 1116 SPGRPGPPGSSGPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPGIPG-PPGIKGPSGS 1173
Score = 26.6 bits (57), Expect = 9.3
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 9 PPARSPDSG----GRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSP 53
PP R +SG G G P P + G+PG+ G G + L P
Sbjct: 286 PPGRKGESGIGAKGEKGIPGFPGPRGDPGSYGSPGFPGLKGELGLVGDP 334
Score = 26.6 bits (57), Expect = 9.3
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 2 GAPYSVVPPARSPDSG-----GRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQV 56
G P PP S + G G+ G P P A +G PG G G + + P +
Sbjct: 816 GFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGM-KGLPGL 874
Query: 57 PSRPPSLSQP 66
P RP + P
Sbjct: 875 PGRPGAHGPP 884
>gi|89027871 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 35.4 bits (80), Expect = 0.020
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 10 PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
P + P+S GG G+P +L PP AA E P + + GR R+P QVPS R P S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSVDRQPPHS 366
Query: 65 QP 66
+P
Sbjct: 367 RP 368
>gi|89027820 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 35.4 bits (80), Expect = 0.020
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 10 PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
P + P+S GG G+P +L PP AA E P + + GR R+P QVPS R P S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSVDRQPPHS 366
Query: 65 QP 66
+P
Sbjct: 367 RP 368
>gi|51466802 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 35.4 bits (80), Expect = 0.020
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 10 PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
P + P+S GG G+P +L PP AA E P + + GR R+P QVPS R P S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSVDRQPPHS 366
Query: 65 QP 66
+P
Sbjct: 367 RP 368
>gi|51466800 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 35.4 bits (80), Expect = 0.020
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 10 PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
P + P+S GG G+P +L PP AA E P + + GR R+P QVPS R P S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSVDRQPPHS 366
Query: 65 QP 66
+P
Sbjct: 367 RP 368
>gi|42658817 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 35.4 bits (80), Expect = 0.020
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 10 PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
P + P+S GG G+P +L PP AA E P + + GR R+P QVPS R P S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSVERQPPHS 366
Query: 65 QP 66
+P
Sbjct: 367 RP 368
>gi|169172766 PREDICTED: hypothetical protein LOC389630 [Homo
sapiens]
Length = 464
Score = 35.4 bits (80), Expect = 0.020
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 10 PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
P + P+S GG G+P +L PP AA E P + + GR R+P QVPS R P S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSVDRQPPHS 366
Query: 65 QP 66
+P
Sbjct: 367 RP 368
>gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 35.0 bits (79), Expect = 0.026
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 10 PARSPDSGGRAGSPRSLAPPAAARA--EGAPGWAGRWGRVPLARSPPQVPSRPPSL-SQP 66
P R PD+ G AG R+ PPAA A EG GR R P R+ + ++ L +
Sbjct: 281 PGRGPDASGAAGRSRA-PPPAAVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTAT 339
Query: 67 LSSRVSLHELLLPS 80
L+ + H LLLPS
Sbjct: 340 LACSLPPHALLLPS 353
>gi|239748084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 35.0 bits (79), Expect = 0.026
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 10 PARSPDSGGRAGSPRSLAPPAAARA--EGAPGWAGRWGRVPLARSPPQVPSRPPSL-SQP 66
P R PD+ G AG R+ PPAA A EG GR R P R+ + ++ L +
Sbjct: 281 PGRGPDASGAAGRSRA-PPPAAVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTAT 339
Query: 67 LSSRVSLHELLLPS 80
L+ + H LLLPS
Sbjct: 340 LACSLPPHALLLPS 353
>gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo
sapiens]
Length = 1194
Score = 35.0 bits (79), Expect = 0.026
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 24/93 (25%)
Query: 14 PDSGGRAGSPRSLAP---PAAARAEGAP--------------GWAGRWGRVPLARSPPQV 56
PDSG R G R LA PA ARA G P G G GR SPP+
Sbjct: 6 PDSGARRGG-RGLADHSFPAGARAPGQPPSRGAAYRRACPRDGERGGGGRPRQQVSPPRS 64
Query: 57 PSRPPSLSQPLSSRV------SLHELLLPSRPP 83
P R P Q + R+ SL L + ++PP
Sbjct: 65 PQREPRGGQLRTPRMRPSCSRSLESLRVGAKPP 97
>gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 34.7 bits (78), Expect = 0.034
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 25/110 (22%)
Query: 12 RSPDSGGRAGSPRSLAPPAAARA----EGAPGWAGRWGRVPLARSPPQVPSRPP-SLSQP 66
R P+ GG P + +P A++RA E +PG P + P +PS PP + +P
Sbjct: 110 RRPEPGGARSRPVAASPAASSRARSRPESSPG-------APGSSVPALLPSLPPLAAPRP 162
Query: 67 LSSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGRRSRGS 116
LS+R L RPP L L G P + G R+ RGS
Sbjct: 163 LSARPRL-------RPPQPQPLALTV------GNGPRAPPAGGSRQPRGS 199
>gi|51466913 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 34.7 bits (78), Expect = 0.034
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 10 PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
P + P+S GG G+P +L PP AA E P + + GR R+P QVPS R P S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSVDRQPPHS 366
Query: 65 QP 66
P
Sbjct: 367 TP 368
>gi|51466907 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 34.7 bits (78), Expect = 0.034
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 10 PARSPDS---GGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPS--RPPSLS 64
P + P+S GG G+P +L PP AA E P + + GR R+P QVPS R P S
Sbjct: 312 PFQIPESAIQGGELGAPENLQPPPAA-TELGPSTSPQMGR----RTPAQVPSIDRQPPHS 366
Query: 65 QP 66
P
Sbjct: 367 TP 368
>gi|239742740 PREDICTED: hypothetical protein XP_002342615 [Homo
sapiens]
Length = 159
Score = 34.7 bits (78), Expect = 0.034
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 6 SVVPPARSPDSGGR----AGSPRSLAPPAAARAEGA----------PGWAGRWGRVPLAR 51
SV PP R+P G GSPR PAA R+ G+ G +G +
Sbjct: 38 SVRPPGRAPGPGTLFLLGKGSPRLAQHPAARRSHGSRLPRTSGSPEEGVSGHGPAAAASL 97
Query: 52 SPPQVPSRPPSLSQP 66
QVP+ PPS +QP
Sbjct: 98 PRAQVPTPPPSHAQP 112
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 34.3 bits (77), Expect = 0.045
Identities = 36/104 (34%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 8 VPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQVPSRPPSLSQPL 67
+P A + +G + R LA P +RA G A R R L PP+ RPP L+
Sbjct: 85 LPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR-RRAHLTGGPPR--RRPPRLAAAH 141
Query: 68 SSRVSLHELLLPSRPPWVTHLLLRATGARLRGGLPLSCLLGLGR 111
S L P T L LR ARL GLP + GL R
Sbjct: 142 GLPASEAPGLRPDSAR--TRLRLRLASARLPRGLPPAPAAGLWR 183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,195,044
Number of Sequences: 37866
Number of extensions: 458143
Number of successful extensions: 4940
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 453
Number of HSP's that attempted gapping in prelim test: 3773
Number of HSP's gapped (non-prelim): 1599
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.