Guide to the Human Genome
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Name: LOC100287882 Sequence: fasta or formatted (157aa) NCBI GI: 239747021
Description:

PREDICTED: hypothetical protein XP_002343906

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         15           3
 C cysteine            0.6          1           1
 D aspartate           1.9          3           2
 E glutamate           1.9          3           1
 F phenylalanine       0.0          0           0
 G glycine            10.2         16           2
 H histidine           2.5          4           1
 I isoleucine          0.6          1           1
 K lysine              0.0          0           0
 L leucine            15.3         24           3
 M methionine          0.6          1           1
 N asparagine          1.3          2           1
 P proline            15.9         25           2
 Q glutamine           2.5          4           1
 R arginine           12.7         20           2
 S serine             12.1         19           2
 T threonine           3.2          5           1
 V valine              5.1          8           2
 W tryptophan          2.5          4           1
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343906 
LOC100293936          1.000   PREDICTED: hypothetical protein 
LOC100287915          1.000   PREDICTED: hypothetical protein XP_002343907 
LOC100291479          0.457   PREDICTED: hypothetical protein XP_002348186 
LOC100291447          0.457   PREDICTED: hypothetical protein XP_002348185 
LOC100288699          0.457   PREDICTED: hypothetical protein XP_002343846 
TMEM99                0.073   transmembrane protein 99 
DNM1                  0.047   dynamin 1 isoform 1 
RSBN1L                0.047   round spermatid basic protein 1-like 
KRTAP4-9              0.043   PREDICTED: keratin associated protein 4-9 
ANO8                  0.040   anoctamin 8 
DNM1                  0.040   dynamin 1 isoform 2 
GRIN2C                0.040   N-methyl-D-aspartate receptor subunit 2C precursor [...
COL1A1                0.037   alpha 1 type I collagen preproprotein 
B4GALNT4              0.037   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
COL4A4                0.037   alpha 4 type IV collagen precursor 
FAM90A12              0.033   PREDICTED: hypothetical protein 
FAM90A14              0.033   PREDICTED: hypothetical protein 
FAM90A5               0.033   PREDICTED: hypothetical protein 
FAM90A13              0.033   PREDICTED: hypothetical protein 
FAM90A3               0.033   PREDICTED: hypothetical protein 
FAM90A15              0.033   PREDICTED: hypothetical protein LOC389630 
LOC100130503          0.033   PREDICTED: hypothetical protein 
LOC100130503          0.033   PREDICTED: hypothetical protein 
SYDE2                 0.033   synapse defective 1, Rho GTPase, homolog 2 
LOC388279             0.033   PREDICTED: hypothetical protein 
FAM90A9               0.033   PREDICTED: hypothetical protein 
FAM90A8               0.033   PREDICTED: hypothetical protein 
LOC100288686          0.033   PREDICTED: hypothetical protein XP_002342615 
LOC100292934          0.030   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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