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Search of human proteins with 116812575
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116812575 high glucose-regulated protein 8 [Homo sapiens]
(579 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116812575 high glucose-regulated protein 8 [Homo sapiens] 1193 0.0
gi|116235460 YTH domain family, member 3 [Homo sapiens] 797 0.0
gi|31377750 YTH domain family, member 1 [Homo sapiens] 747 0.0
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 71 2e-12
gi|38505213 YTH domain containing 2 [Homo sapiens] 66 8e-11
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 65 2e-10
gi|110832843 TBP-associated factor 4 [Homo sapiens] 48 2e-05
gi|56118221 amyloid beta (A4) precursor protein-binding, family ... 47 6e-05
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 45 1e-04
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 45 1e-04
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 45 1e-04
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 44 3e-04
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 44 3e-04
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 44 4e-04
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 44 5e-04
gi|150170670 piccolo isoform 2 [Homo sapiens] 44 5e-04
gi|150378539 piccolo isoform 1 [Homo sapiens] 44 5e-04
gi|40807465 zinc finger protein 341 [Homo sapiens] 44 5e-04
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 43 7e-04
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 43 7e-04
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 43 7e-04
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 43 0.001
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 43 0.001
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 43 0.001
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 43 0.001
gi|19924099 synapsin I isoform Ia [Homo sapiens] 43 0.001
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 43 0.001
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 42 0.001
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re... 42 0.001
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 42 0.002
>gi|116812575 high glucose-regulated protein 8 [Homo sapiens]
Length = 579
Score = 1193 bits (3087), Expect = 0.0
Identities = 579/579 (100%), Positives = 579/579 (100%)
Query: 1 MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY 60
MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY
Sbjct: 1 MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY 60
Query: 61 SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 120
SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH
Sbjct: 61 SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 120
Query: 121 GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAP 180
GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAP
Sbjct: 121 GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAP 180
Query: 181 GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWA 240
GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWA
Sbjct: 181 GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWA 240
Query: 241 DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPT 300
DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPT
Sbjct: 241 DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPT 300
Query: 301 QGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSG 360
QGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSG
Sbjct: 301 QGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSG 360
Query: 361 FGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSE 420
FGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSE
Sbjct: 361 FGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSE 420
Query: 421 DDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYN 480
DDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYN
Sbjct: 421 DDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYN 480
Query: 481 TCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQV 540
TCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQV
Sbjct: 481 TCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQV 540
Query: 541 LKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 579
LKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK
Sbjct: 541 LKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 579
>gi|116235460 YTH domain family, member 3 [Homo sapiens]
Length = 585
Score = 797 bits (2059), Expect = 0.0
Identities = 405/598 (67%), Positives = 468/598 (78%), Gaps = 42/598 (7%)
Query: 1 MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPS 58
MSA+S+ +QRPKGQGNKV QNGS+HQKD +NDDDFEPYLS Q +N+Y MSD Y+PS
Sbjct: 1 MSATSV-DQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPS 59
Query: 59 YYSPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FL 117
YY+PSIGF YSLGEAAWST GD MPYLT+YGQ+SNGE H++PD +F QPGALG+TP FL
Sbjct: 60 YYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFL 119
Query: 118 GQHGFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLN 177
GQHGFNFFP DFS WG + SQGQSTQSS YSS+Y Y PSSLG A+ DGQ+ F N+TL+
Sbjct: 120 GQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLS 179
Query: 178 KAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPA 237
K PG+++I+QGM LK+G ++ + V K VG+A+ S +TS +A+NS+PP + A PKP
Sbjct: 180 KVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPT 236
Query: 238 SWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALV-- 293
SWA IA KPAK QPKLK K GI GS++PPPPIKHNM+IGTWD KG V KAP V
Sbjct: 237 SWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLP 296
Query: 294 -QNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQ---------PAQLSVQQ 343
Q I Q PQP+ Q PP+ Q+ + QQ QP PP P Q P Q+ QQ
Sbjct: 297 PQTIIQ----QPQPLIQP----PPLVQSQLPQQ-QPQPPQPQQQQGPQPQAQPHQVQPQQ 347
Query: 344 QAAQPTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTPS-------EPHPVLEKLRSIN 396
Q Q RWVAPRNRG+GF N NG G G G P E HPVLEKL++IN
Sbjct: 348 QQLQ-NRWVAPRNRGAGFNQN----NGAGSENFGLGVVPVSASPSSVEVHPVLEKLKAIN 402
Query: 397 NYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVY 456
NYNPKDFDWNLK+GRVFIIKSYSEDDIHRSIKY+IWCSTEHGNKRLDAAYRS+NGKGP+Y
Sbjct: 403 NYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLY 462
Query: 457 LLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLE 516
LLFSVNGSGHFCGVAEMKS VDYN AGVWSQDKWKG+F+V+WIFVKDVPN+QLRHIRLE
Sbjct: 463 LLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLE 522
Query: 517 NNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 574
NN+NKPVTNSRDTQEVPLEKAKQVLKIIA++KHTTSIFDDF+HYEKRQEEEE++++ER
Sbjct: 523 NNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 580
>gi|31377750 YTH domain family, member 1 [Homo sapiens]
Length = 559
Score = 747 bits (1929), Expect = 0.0
Identities = 378/584 (64%), Positives = 440/584 (75%), Gaps = 31/584 (5%)
Query: 1 MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY 60
MSA+S+ QR KGQ NKVQNGS+HQKD ++D+DFEPYL+ Q+ +N+Y +MSD YL SYY
Sbjct: 1 MSATSVDTQRTKGQDNKVQNGSLHQKDTVHDNDFEPYLTGQSNQSNSYPSMSDPYLSSYY 60
Query: 61 SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 120
PSIGF YSL EA WST GD +PYLT+YGQLSNG+ HF+ DA+FGQPG LG+ + QH
Sbjct: 61 PPSIGFPYSLNEAPWSTAGDPPIPYLTTYGQLSNGDHHFMHDAVFGQPGGLGNNIY--QH 118
Query: 121 GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAP 180
FNFFP FSAWG + SQGQ TQSS Y S+Y Y PSSLGG ++DGQ F ++TL+KAP
Sbjct: 119 RFNFFPENPAFSAWGTSGSQGQQTQSSAYGSSYTYPPSSLGGTVVDGQPGFHSDTLSKAP 178
Query: 181 GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWA 240
GMN+++QGM LK+G +V+S+ K VGS V S ++T +++ N + KP SWA
Sbjct: 179 GMNSLEQGMVGLKIG--DVSSSAVKTVGSVVSSVALTG-VLSGNGGTNVNMPVSKPTSWA 235
Query: 241 DIASKPAKQQPKLKTKNG-IAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQP 299
IASKPAK QPK+KTK+G + G LPPPPIKHNMDIGTWDNKGPV KAP V
Sbjct: 236 AIASKPAKPQPKMKTKSGPVMGGGLPPPPIKHNMDIGTWDNKGPVPKAP----VPQQAPS 291
Query: 300 TQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQP-TRWVAPRNRG 358
Q +PQP Q QPLP PP AQ Q P TRWVAPRNR
Sbjct: 292 PQAAPQPQ----------------QVAQPLPAQPPALAQPQYQSPQQPPQTRWVAPRNRN 335
Query: 359 SGFGHNG---VDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFII 415
+ FG +G D N G Q S + E HPVLEKL++ ++YNPK+F+WNLK GRVFII
Sbjct: 336 AAFGQSGGAGSDSNSPGNVQPNSAPSV-ESHPVLEKLKAAHSYNPKEFEWNLKSGRVFII 394
Query: 416 KSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKS 475
KSYSEDDIHRSIKY+IWCSTEHGNKRLD+A+R M+ KGPVYLLFSVNGSGHFCGVAEMKS
Sbjct: 395 KSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLFSVNGSGHFCGVAEMKS 454
Query: 476 AVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLE 535
VDY T AGVWSQDKWKG+FDV+WIFVKDVPN+QLRHIRLENN+NKPVTNSRDTQEVPLE
Sbjct: 455 PVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLE 514
Query: 536 KAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 579
KAKQVLKII+SYKHTTSIFDDF+HYEKRQEEEE V+KERQ R K
Sbjct: 515 KAKQVLKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKERQSRNK 558
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 71.2 bits (173), Expect = 2e-12
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 10/192 (5%)
Query: 355 RNRGSGFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFI 414
R R G D +G S++ +GS + +R++ + L+ R F+
Sbjct: 301 RKRARGISPIVFDRSGSSASESYAGSEKKH-EKLSSSVRAVRKDQTSKLKYVLQDARFFL 359
Query: 415 IKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMK 474
IKS + +++ + +W + K+L+ A+RS V L+FSV SG F G A +
Sbjct: 360 IKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS---VILIFSVRESGKFQGFARLS 416
Query: 475 SAVDYNTCAGVW------SQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRD 528
S + W S G F + WI +++P ++ H+ NE+KPV RD
Sbjct: 417 SESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRD 476
Query: 529 TQEVPLEKAKQV 540
QE+ LE Q+
Sbjct: 477 GQEIELECGTQL 488
>gi|38505213 YTH domain containing 2 [Homo sapiens]
Length = 1430
Score = 66.2 bits (160), Expect = 8e-11
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 411 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGV 470
R FI+KS + ++ S + IW +T ++L+ A+ + VYL+FSV GSGHF G
Sbjct: 1289 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS---IVYLVFSVQGSGHFQGF 1345
Query: 471 AEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQ 530
+ M S + W G F V WI + +P H+ N+NK V SRD Q
Sbjct: 1346 SRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQ 1404
Query: 531 EVPLEKAKQVLKI 543
E+ +Q+L++
Sbjct: 1405 ELEPLVGEQLLQL 1417
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 65.1 bits (157), Expect = 2e-10
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 407 LKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGH 466
L+ R F+IKS + +++ + +W + K+L+ A+RS V L+FSV SG
Sbjct: 334 LQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS---VILIFSVRESGK 390
Query: 467 FCGVAEMKSAVDYNTCAGVW------SQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNEN 520
F G A + S + W S G F + WI +++P ++ H+ NE+
Sbjct: 391 FQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEH 450
Query: 521 KPVTNSRDTQEVPLEKAKQV 540
KPV RD QE+ LE Q+
Sbjct: 451 KPVKIGRDGQEIELECGTQL 470
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 48.1 bits (113), Expect = 2e-05
Identities = 55/217 (25%), Positives = 83/217 (38%), Gaps = 23/217 (10%)
Query: 182 MNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWAD 241
+ +++ +AA +A P+V +A G+ N V S S PA A PA+ A+
Sbjct: 26 VGSLESQLAASAAHHHHLAPRTPEVRAAAAGA---LGNHVVSGS--PAGAAGAGPAAPAE 80
Query: 242 IASKPAKQQPKL-KTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPT 300
A A + P + + G G P PP + P AP A ++
Sbjct: 81 GAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLV-------PAGPAPPAAKLR------ 127
Query: 301 QGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSG 360
P P G + +P A A+V +P P P +PA + A P P G G
Sbjct: 128 ---PPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGP-GPGPG 183
Query: 361 FGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINN 397
G G G Q+ GS + + H + +NN
Sbjct: 184 PGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNN 220
Score = 42.0 bits (97), Expect = 0.002
Identities = 53/207 (25%), Positives = 73/207 (35%), Gaps = 28/207 (13%)
Query: 157 PSSLGGAM-IDGQSAFANETLNKAPGMNTIDQGMAAL----KLGSTEVASNVPKVVGSAV 211
P+ G A ++G +A N AP ++ ++ G AAL K + P VG+A
Sbjct: 189 PAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAA 248
Query: 212 GSG-SITSNIVASNSLPPATIAPPKPASWADIA-----------SKPAKQQPKLKTKNGI 259
+ S A PA PP P + A +A + PA P G
Sbjct: 249 PPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGS 308
Query: 260 AGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQP---TQGSPQPVGQQANNSPP 316
AG++ P P G GP A A + A P Q +P A + P
Sbjct: 309 AGAAPAPAPAAGG-PAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPA 367
Query: 317 VAQASV-------GQQTQPLPPPPPQP 336
AS+ G P PPP P
Sbjct: 368 STAASMVIGPTMQGALPSPAAVPPPAP 394
Score = 32.0 bits (71), Expect = 1.6
Identities = 40/155 (25%), Positives = 53/155 (34%), Gaps = 19/155 (12%)
Query: 204 PKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSS 263
P GSA + + + PA P KPA A +A++ G
Sbjct: 128 PPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPG 187
Query: 264 LPPPP-IKHNMDIGTWDNKGPVAKAPSQALVQN-----IGQPTQGSPQPVGQQ------- 310
P P ++ A AP+ +LV N + P +P V Q
Sbjct: 188 KPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAA 247
Query: 311 -----ANNSPPVAQASVGQQTQPLPPPPPQPAQLS 340
A SPP A A P PPPPP PA L+
Sbjct: 248 APPAPAAPSPPAAPAPAAPAAAP-PPPPPAPATLA 281
>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein [Homo sapiens]
Length = 666
Score = 46.6 bits (109), Expect = 6e-05
Identities = 45/151 (29%), Positives = 52/151 (34%), Gaps = 22/151 (14%)
Query: 224 NSLPPATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGP 283
+SLPP PP +D + PA LK K G G LP PP D+ P
Sbjct: 514 SSLPP----PPPVRRSSDTSGSPATP---LKAK-GTGGGGLPAPP----------DDFLP 555
Query: 284 VAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQ 343
P + P +P PP G + P PPPPP PA V
Sbjct: 556 PPPPPPPLDDPELPPPPPDFMEPPPDFVPPPPPSYAGIAGSELPPPPPPPPAPAPAPVPD 615
Query: 344 QAAQP----TRWVAPRNRGSGFGHNGVDGNG 370
A P R P R GH G G G
Sbjct: 616 SARPPPAVAKRPPVPPKRQENPGHPGGAGGG 646
Score = 30.0 bits (66), Expect = 6.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 295 NIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQ 347
++G T + + Q ++ PP V PLPPPPP+P LS +++ AQ
Sbjct: 109 SLGYGTNVAATGISQYEDDLPPPPADPV--LDLPLPPPPPEP--LSQEEEEAQ 157
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 45.4 bits (106), Expect = 1e-04
Identities = 83/353 (23%), Positives = 127/353 (35%), Gaps = 75/353 (21%)
Query: 35 EPYLSPQARPNNAYTAMSDSYLPSYYSPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSN 94
+PY S Q +P + YLPS + + + T S L+
Sbjct: 553 QPYYSQQPQP--PHLPPQAQYLPSQSQQRYQPQQDMSQEGYGT---------RSQPPLAP 601
Query: 95 GEPHFLPDAMFGQPGALGSTPFLGQHGFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYA 154
G+P+ D Q S P L + P+G + + S+ G ST S G SN A
Sbjct: 602 GKPNH-EDLNLIQQERPSSLPDLSG-SIDDLPTGTEATLSSAVSASG-STSSQGDQSNPA 658
Query: 155 YAPSSLGGAMIDGQSAFANETLNKAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSG 214
+P S + +P +++I G + P VGS VGS
Sbjct: 659 QSPFSP----------------HASPHLSSIPGGPS-------------PSPVGSPVGSN 689
Query: 215 SITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKNG-IAGSSLPPPPIKHNM 273
S ++ S+P + + P P S ++ +S PA Q + + G +AG+ P ++
Sbjct: 690 QSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQY-- 747
Query: 274 DIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPP 333
GP PS + P P GQ A S QQ+
Sbjct: 748 --------GPQQTGPSMS----------PHPSPGGQMH------AGISSFQQSNSSGTYG 783
Query: 334 PQPAQLSVQQQAAQPTRWV-APRNRGSGFGHNGVDGNGVGQSQAGSGSTPSEP 385
PQ +Q Q ++P + P SG G G G+ + G PS+P
Sbjct: 784 PQMSQYGPQGNYSRPPAYSGVPSASYSGPG----PGMGISANNQMHGQGPSQP 832
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 45.4 bits (106), Expect = 1e-04
Identities = 83/353 (23%), Positives = 127/353 (35%), Gaps = 75/353 (21%)
Query: 35 EPYLSPQARPNNAYTAMSDSYLPSYYSPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSN 94
+PY S Q +P + YLPS + + + T S L+
Sbjct: 540 QPYYSQQPQP--PHLPPQAQYLPSQSQQRYQPQQDMSQEGYGT---------RSQPPLAP 588
Query: 95 GEPHFLPDAMFGQPGALGSTPFLGQHGFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYA 154
G+P+ D Q S P L + P+G + + S+ G ST S G SN A
Sbjct: 589 GKPNH-EDLNLIQQERPSSLPDLSG-SIDDLPTGTEATLSSAVSASG-STSSQGDQSNPA 645
Query: 155 YAPSSLGGAMIDGQSAFANETLNKAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSG 214
+P S + +P +++I G + P VGS VGS
Sbjct: 646 QSPFSP----------------HASPHLSSIPGGPS-------------PSPVGSPVGSN 676
Query: 215 SITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKNG-IAGSSLPPPPIKHNM 273
S ++ S+P + + P P S ++ +S PA Q + + G +AG+ P ++
Sbjct: 677 QSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQY-- 734
Query: 274 DIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPP 333
GP PS + P P GQ A S QQ+
Sbjct: 735 --------GPQQTGPSMS----------PHPSPGGQMH------AGISSFQQSNSSGTYG 770
Query: 334 PQPAQLSVQQQAAQPTRWV-APRNRGSGFGHNGVDGNGVGQSQAGSGSTPSEP 385
PQ +Q Q ++P + P SG G G G+ + G PS+P
Sbjct: 771 PQMSQYGPQGNYSRPPAYSGVPSASYSGPG----PGMGISANNQMHGQGPSQP 819
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 45.4 bits (106), Expect = 1e-04
Identities = 83/353 (23%), Positives = 127/353 (35%), Gaps = 75/353 (21%)
Query: 35 EPYLSPQARPNNAYTAMSDSYLPSYYSPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSN 94
+PY S Q +P + YLPS + + + T S L+
Sbjct: 540 QPYYSQQPQP--PHLPPQAQYLPSQSQQRYQPQQDMSQEGYGT---------RSQPPLAP 588
Query: 95 GEPHFLPDAMFGQPGALGSTPFLGQHGFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYA 154
G+P+ D Q S P L + P+G + + S+ G ST S G SN A
Sbjct: 589 GKPNH-EDLNLIQQERPSSLPDLSG-SIDDLPTGTEATLSSAVSASG-STSSQGDQSNPA 645
Query: 155 YAPSSLGGAMIDGQSAFANETLNKAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSG 214
+P S + +P +++I G + P VGS VGS
Sbjct: 646 QSPFSP----------------HASPHLSSIPGGPS-------------PSPVGSPVGSN 676
Query: 215 SITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKNG-IAGSSLPPPPIKHNM 273
S ++ S+P + + P P S ++ +S PA Q + + G +AG+ P ++
Sbjct: 677 QSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQY-- 734
Query: 274 DIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPP 333
GP PS + P P GQ A S QQ+
Sbjct: 735 --------GPQQTGPSMS----------PHPSPGGQMH------AGISSFQQSNSSGTYG 770
Query: 334 PQPAQLSVQQQAAQPTRWV-APRNRGSGFGHNGVDGNGVGQSQAGSGSTPSEP 385
PQ +Q Q ++P + P SG G G G+ + G PS+P
Sbjct: 771 PQMSQYGPQGNYSRPPAYSGVPSASYSGPG----PGMGISANNQMHGQGPSQP 819
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 44.3 bits (103), Expect = 3e-04
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 208 GSAVGSGSITSNIVASNSLPPATIAPPKPASWAD-IASKPAKQQPKLKTKNGIAGSSLPP 266
G+A+G GSI + ++S+S P + PP P + + + KP P + + I ++PP
Sbjct: 227 GTALGGGSIRQSPLSSSS--PFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPP 284
Query: 267 PPIKHNM-DIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQ 325
PP ++N + + ++AP + P P G P S+
Sbjct: 285 PPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSS 344
Query: 326 TQPLPPP------PPQPAQ 338
T PLP P PP P++
Sbjct: 345 TPPLPSPGRSGPLPPPPSE 363
Score = 38.9 bits (89), Expect = 0.013
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 33/140 (23%)
Query: 228 PATIAPPKPASWADIASKPAKQ-QPKLK--TKNGIAGSSLPPPPIKHNMDIG-------- 276
P +I PP P++ I S P + P + + G + PP P +G
Sbjct: 180 PDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSP 239
Query: 277 -----TWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQA-------------NNSPPVA 318
+ N+ P+ PS+AL P P PVG + NN PPV
Sbjct: 240 LSSSSPFSNRPPLPPTPSRALDDKPPPP----PPPVGNRPSIHREAVPPPPPQNNKPPVP 295
Query: 319 QASVGQQTQPLPPPPPQPAQ 338
+ PPPPP P++
Sbjct: 296 STPRPSASSQAPPPPPPPSR 315
Score = 35.0 bits (79), Expect = 0.19
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 302 GSPQPVGQQANNSPPVAQASVGQQTQPLPPP---PPQPAQLS------------VQQQAA 346
G P+P Q N PP + VG + +PPP P+P Q S +Q +
Sbjct: 160 GPPEP---QRNRMPP-PRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSP 215
Query: 347 QPTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTPSEPHP 387
PT P NRG+ G + + + S S P P P
Sbjct: 216 GPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTP 256
Score = 35.0 bits (79), Expect = 0.19
Identities = 33/140 (23%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 222 ASNSLPPATIAPPKPASWADIASKPAKQQ-PKLKTKNGIAGSSLPPPPIKHNMDIGTWDN 280
AS+ PP P +P S + P+L +N SS PP P
Sbjct: 302 ASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSP--------GR 353
Query: 281 KGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLS 340
GP+ PS+ +P P G+ PP + G ++ LP P P++
Sbjct: 354 SGPLPPPPSE-------RPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSG 406
Query: 341 VQQQAAQPTRWVAPRNRGSG 360
V + P + P +G
Sbjct: 407 VDSPRSGPRPPLPPDRPSAG 426
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 44.3 bits (103), Expect = 3e-04
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 208 GSAVGSGSITSNIVASNSLPPATIAPPKPASWAD-IASKPAKQQPKLKTKNGIAGSSLPP 266
G+A+G GSI + ++S+S P + PP P + + + KP P + + I ++PP
Sbjct: 227 GTALGGGSIRQSPLSSSS--PFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPP 284
Query: 267 PPIKHNM-DIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQ 325
PP ++N + + ++AP + P P G P S+
Sbjct: 285 PPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSS 344
Query: 326 TQPLPPP------PPQPAQ 338
T PLP P PP P++
Sbjct: 345 TPPLPSPGRSGPLPPPPSE 363
Score = 38.9 bits (89), Expect = 0.013
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 33/140 (23%)
Query: 228 PATIAPPKPASWADIASKPAKQ-QPKLK--TKNGIAGSSLPPPPIKHNMDIG-------- 276
P +I PP P++ I S P + P + + G + PP P +G
Sbjct: 180 PDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSP 239
Query: 277 -----TWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQA-------------NNSPPVA 318
+ N+ P+ PS+AL P P PVG + NN PPV
Sbjct: 240 LSSSSPFSNRPPLPPTPSRALDDKPPPP----PPPVGNRPSIHREAVPPPPPQNNKPPVP 295
Query: 319 QASVGQQTQPLPPPPPQPAQ 338
+ PPPPP P++
Sbjct: 296 STPRPSASSQAPPPPPPPSR 315
Score = 35.0 bits (79), Expect = 0.19
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 302 GSPQPVGQQANNSPPVAQASVGQQTQPLPPP---PPQPAQLS------------VQQQAA 346
G P+P Q N PP + VG + +PPP P+P Q S +Q +
Sbjct: 160 GPPEP---QRNRMPP-PRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSP 215
Query: 347 QPTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTPSEPHP 387
PT P NRG+ G + + + S S P P P
Sbjct: 216 GPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTP 256
Score = 35.0 bits (79), Expect = 0.19
Identities = 33/140 (23%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 222 ASNSLPPATIAPPKPASWADIASKPAKQQ-PKLKTKNGIAGSSLPPPPIKHNMDIGTWDN 280
AS+ PP P +P S + P+L +N SS PP P
Sbjct: 302 ASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSP--------GR 353
Query: 281 KGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLS 340
GP+ PS+ +P P G+ PP + G ++ LP P P++
Sbjct: 354 SGPLPPPPSE-------RPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSG 406
Query: 341 VQQQAAQPTRWVAPRNRGSG 360
V + P + P +G
Sbjct: 407 VDSPRSGPRPPLPPDRPSAG 426
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 43.9 bits (102), Expect = 4e-04
Identities = 28/76 (36%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 310 QANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSGFGHNGVDGN 369
QA P AQ Q P P P P PA PT AP + G G G
Sbjct: 6 QAPTPAPAAQPRPLQS--PAPAPTPTPAPSPASAPIPTPTPAPAPAPAAAPAGSTGTGGP 63
Query: 370 GVGQSQAGSGSTPSEP 385
GVG AGSG P+ P
Sbjct: 64 GVGSGGAGSGGDPARP 79
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 43.5 bits (101), Expect = 5e-04
Identities = 46/168 (27%), Positives = 63/168 (37%), Gaps = 17/168 (10%)
Query: 227 PPATIAPPKP---ASWADIASKPAKQQPKLKTKNGIAGSSLPP---PPIKHNMDIGTWDN 280
P A ++PP P AS A +S + P +G G+S P+ M++
Sbjct: 927 PGARLSPPAPPLLASAASSSSLLSASSPASSLGSGTPGTSSDSRQRSPLSDYMNLDFSSP 986
Query: 281 KGPVAKAPSQALVQNIG---QPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPA 337
K P APS V ++ P SP P PP AS QP PPPPP P
Sbjct: 987 KSPKPGAPSGHPVGSLDGLLSPEASSPYPP------LPPRPSASPSSSLQP-PPPPPAPG 1039
Query: 338 QLSVQQQAAQPTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTPSEP 385
+L A+ P S + D + G +TP +P
Sbjct: 1040 ELYRLPPASAVATAQGP-GAASSLSSDTGDNGDYTEMAFGVAATPPQP 1086
Score = 33.1 bits (74), Expect = 0.72
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 323 GQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTP 382
G QP PPPPP P Q + W R+ G GV G G G G+ P
Sbjct: 1263 GLPPQPQPPPPPLP-------QPGDKSSWGRTRSLGGLISAVGVGSTGGGCGGPGPGALP 1315
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 43.5 bits (101), Expect = 5e-04
Identities = 39/151 (25%), Positives = 51/151 (33%), Gaps = 17/151 (11%)
Query: 205 KVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQP-KLKTKNGIAGSS 263
K+ G G ++ P P KP +KP QQP K + GS+
Sbjct: 448 KIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGST 507
Query: 264 LPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVG 323
PPP GP +P Q GS +P QQ + + P AQ S
Sbjct: 508 KPPP-----------QQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTK 556
Query: 324 QQTQ-----PLPPPPPQPAQLSVQQQAAQPT 349
+Q PL PP P+ Q T
Sbjct: 557 PVSQTGSGKPLQPPTVSPSAKQPPSQGLPKT 587
Score = 40.8 bits (94), Expect = 0.003
Identities = 51/185 (27%), Positives = 68/185 (36%), Gaps = 26/185 (14%)
Query: 218 SNIVASNSLPPATIAPPKPASWADIASKPAKQQP-KLKTKNGIAGSSLPPPPIKHNMDIG 276
++IV S+ P+ +P KP KP QQP K++ G A P + +
Sbjct: 286 ADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQ 345
Query: 277 TWDNKGPV-----AKAPSQAL------VQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQ 325
K PV K P+Q L Q G S QP G +A PP + QQ
Sbjct: 346 PGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQP-GPKALAQPPGVGKTPAQQ 404
Query: 326 TQPLPPPPPQ---PAQLSVQQQAAQPTRWVAPRNRGSGFGHNGVDGNGVGQ---SQAGSG 379
P PP Q P L+ Q P + P V G G+ QAG G
Sbjct: 405 PGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTK-------TPVQQPGPGKIPAQQAGPG 457
Query: 380 STPSE 384
T ++
Sbjct: 458 KTSAQ 462
Score = 33.1 bits (74), Expect = 0.72
Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 22/119 (18%)
Query: 235 KPASWADIASKPAKQQPKLK-----TKNGIAGSSLPPPPIKHNMDIGTWD--NKGPVAKA 287
K A D+A P+ QPKLK T + ++ SS P D +K P K
Sbjct: 643 KRALGGDLAPVPSSPQPKLKTAPVTTTSAVSKSSPQPQQTSPKKDAAPKQDLSKAPEPKK 702
Query: 288 PSQALVQNIGQPT-QGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQA 345
P + QPT GSP +Q PP A + P PP +P+ S Q +A
Sbjct: 703 PPPL----VKQPTLHGSPSAKAKQ----PPEA------DSLSKPAPPKEPSVPSEQDKA 747
Score = 32.0 bits (71), Expect = 1.6
Identities = 39/141 (27%), Positives = 51/141 (36%), Gaps = 6/141 (4%)
Query: 204 PKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSS 263
PK + G G + P + PKP + PAK KT G
Sbjct: 388 PKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPG 447
Query: 264 LPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSP-QPVGQQANNSPPVAQASV 322
P + + GP K PSQ P Q P +P QQ ++ P +Q
Sbjct: 448 KIPAQ-QAGPGKTSAQQTGP-TKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQP- 504
Query: 323 GQQTQPLPPPPPQPAQLSVQQ 343
T+P PP P PA+ S QQ
Sbjct: 505 -GSTKP-PPQQPGPAKPSPQQ 523
Score = 32.0 bits (71), Expect = 1.6
Identities = 37/139 (26%), Positives = 44/139 (31%), Gaps = 35/139 (25%)
Query: 212 GSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSSLPPPPIKH 271
G G I + P KP S +KP QQP G + PPP
Sbjct: 445 GPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQP---------GPAKPPP---- 491
Query: 272 NMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPP 331
+ AK PSQ QP GS +P QQ + P Q Q P
Sbjct: 492 --------QQPGSAKPPSQ-------QP--GSTKPPPQQPGPAKPSPQ-----QPGSTKP 529
Query: 332 PPPQPAQLSVQQQAAQPTR 350
P QP Q P +
Sbjct: 530 PSQQPGSAKPSAQQPSPAK 548
Score = 29.6 bits (65), Expect = 7.9
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 298 QPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQP 336
Q GSP A P +S+ QP PPPPP P
Sbjct: 2375 QLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPP 2413
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 43.5 bits (101), Expect = 5e-04
Identities = 39/151 (25%), Positives = 51/151 (33%), Gaps = 17/151 (11%)
Query: 205 KVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQP-KLKTKNGIAGSS 263
K+ G G ++ P P KP +KP QQP K + GS+
Sbjct: 448 KIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGST 507
Query: 264 LPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVG 323
PPP GP +P Q GS +P QQ + + P AQ S
Sbjct: 508 KPPP-----------QQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTK 556
Query: 324 QQTQ-----PLPPPPPQPAQLSVQQQAAQPT 349
+Q PL PP P+ Q T
Sbjct: 557 PVSQTGSGKPLQPPTVSPSAKQPPSQGLPKT 587
Score = 40.8 bits (94), Expect = 0.003
Identities = 51/185 (27%), Positives = 68/185 (36%), Gaps = 26/185 (14%)
Query: 218 SNIVASNSLPPATIAPPKPASWADIASKPAKQQP-KLKTKNGIAGSSLPPPPIKHNMDIG 276
++IV S+ P+ +P KP KP QQP K++ G A P + +
Sbjct: 286 ADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQ 345
Query: 277 TWDNKGPV-----AKAPSQAL------VQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQ 325
K PV K P+Q L Q G S QP G +A PP + QQ
Sbjct: 346 PGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQP-GPKALAQPPGVGKTPAQQ 404
Query: 326 TQPLPPPPPQ---PAQLSVQQQAAQPTRWVAPRNRGSGFGHNGVDGNGVGQ---SQAGSG 379
P PP Q P L+ Q P + P V G G+ QAG G
Sbjct: 405 PGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTK-------TPVQQPGPGKIPAQQAGPG 457
Query: 380 STPSE 384
T ++
Sbjct: 458 KTSAQ 462
Score = 33.1 bits (74), Expect = 0.72
Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 22/119 (18%)
Query: 235 KPASWADIASKPAKQQPKLK-----TKNGIAGSSLPPPPIKHNMDIGTWD--NKGPVAKA 287
K A D+A P+ QPKLK T + ++ SS P D +K P K
Sbjct: 643 KRALGGDLAPVPSSPQPKLKTAPVTTTSAVSKSSPQPQQTSPKKDAAPKQDLSKAPEPKK 702
Query: 288 PSQALVQNIGQPT-QGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQA 345
P + QPT GSP +Q PP A + P PP +P+ S Q +A
Sbjct: 703 PPPL----VKQPTLHGSPSAKAKQ----PPEA------DSLSKPAPPKEPSVPSEQDKA 747
Score = 32.0 bits (71), Expect = 1.6
Identities = 39/141 (27%), Positives = 51/141 (36%), Gaps = 6/141 (4%)
Query: 204 PKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSS 263
PK + G G + P + PKP + PAK KT G
Sbjct: 388 PKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPG 447
Query: 264 LPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSP-QPVGQQANNSPPVAQASV 322
P + + GP K PSQ P Q P +P QQ ++ P +Q
Sbjct: 448 KIPAQ-QAGPGKTSAQQTGP-TKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQP- 504
Query: 323 GQQTQPLPPPPPQPAQLSVQQ 343
T+P PP P PA+ S QQ
Sbjct: 505 -GSTKP-PPQQPGPAKPSPQQ 523
Score = 32.0 bits (71), Expect = 1.6
Identities = 37/139 (26%), Positives = 44/139 (31%), Gaps = 35/139 (25%)
Query: 212 GSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSSLPPPPIKH 271
G G I + P KP S +KP QQP G + PPP
Sbjct: 445 GPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQP---------GPAKPPP---- 491
Query: 272 NMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPP 331
+ AK PSQ QP GS +P QQ + P Q Q P
Sbjct: 492 --------QQPGSAKPPSQ-------QP--GSTKPPPQQPGPAKPSPQ-----QPGSTKP 529
Query: 332 PPPQPAQLSVQQQAAQPTR 350
P QP Q P +
Sbjct: 530 PSQQPGSAKPSAQQPSPAK 548
Score = 29.6 bits (65), Expect = 7.9
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 298 QPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQP 336
Q GSP A P +S+ QP PPPPP P
Sbjct: 2375 QLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPP 2413
>gi|40807465 zinc finger protein 341 [Homo sapiens]
Length = 847
Score = 43.5 bits (101), Expect = 5e-04
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 20/237 (8%)
Query: 163 AMIDGQSAFANET---LNKAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSN 219
+++DGQ A + T +N P + +D L + +++P + +
Sbjct: 22 SLLDGQGAVPDPTGQSVNAPPAIQPLDDEDVFLCGKCKKQFNSLPAFMTHKREQCQGNAP 81
Query: 220 IVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWD 279
+A+ SL +I PP A A +Q P + ++PP P+ + G
Sbjct: 82 ALATVSLATNSIYPPSAAPTA------VQQAPTPANRQISTYITVPPSPLIQTLVQGNIL 135
Query: 280 NKGPVAKAPSQALVQNIGQPTQGSPQPVGQQAN-NSPPVAQASVGQQTQPLPPPPPQPAQ 338
V + A ++ QP P PV N +S P S Q P PPPPP
Sbjct: 136 VSDDVLMSAMSAFT-SLDQPMPQGPPPVQSSLNMHSVP----SYLTQPPPPPPPPPPLPP 190
Query: 339 LSVQQQAAQPTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTP-----SEPHPVLE 390
Q P + + P R + G+ V+ AGSG+ +P+P LE
Sbjct: 191 PPPPQPPPPPPQSLGPPGRPNPGGNGVVEVYSAAAPLAGSGTVEIQALGMQPYPPLE 247
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 43.1 bits (100), Expect = 7e-04
Identities = 45/152 (29%), Positives = 62/152 (40%), Gaps = 29/152 (19%)
Query: 260 AGSSLPPPPIKHNMDIGTWDN--KGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPP- 316
AG S PP P+ GTW +GP A +P+ AL P + + V +A PP
Sbjct: 31 AGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPK 90
Query: 317 ---------VAQASVGQQTQPLPP--PPPQP--------AQLSVQQQAAQPTRWVAPRN- 356
V AS +++QP P PPP P + S+ + A TR R+
Sbjct: 91 RPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSG 150
Query: 357 -----RGSGFGH-NGVDGNGVGQSQAGSGSTP 382
GSG+ H + G G S AG + P
Sbjct: 151 RRGDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 43.1 bits (100), Expect = 7e-04
Identities = 45/152 (29%), Positives = 62/152 (40%), Gaps = 29/152 (19%)
Query: 260 AGSSLPPPPIKHNMDIGTWDN--KGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPP- 316
AG S PP P+ GTW +GP A +P+ AL P + + V +A PP
Sbjct: 31 AGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPK 90
Query: 317 ---------VAQASVGQQTQPLPP--PPPQP--------AQLSVQQQAAQPTRWVAPRN- 356
V AS +++QP P PPP P + S+ + A TR R+
Sbjct: 91 RPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSG 150
Query: 357 -----RGSGFGH-NGVDGNGVGQSQAGSGSTP 382
GSG+ H + G G S AG + P
Sbjct: 151 RRGDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 43.1 bits (100), Expect = 7e-04
Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 29/152 (19%)
Query: 260 AGSSLPPPPIKHNMDIGTWDN--KGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPP- 316
AG S PP P+ GTW +GP A +P+ AL P + + V +A PP
Sbjct: 31 AGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPK 90
Query: 317 ---------VAQASVGQQTQPL-----PPPPPQPAQLSVQQQAAQPTRWVAPRNRGSGFG 362
V AS +++QP PP P +P ++++ + R +G G
Sbjct: 91 RPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSG 150
Query: 363 HNGVDGN------------GVGQSQAGSGSTP 382
G G+ G G S AG + P
Sbjct: 151 RRGDRGDSGWSHGHTARVGGTGDSSAGLTTFP 182
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 42.7 bits (99), Expect = 0.001
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 28/115 (24%)
Query: 225 SLPPATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPV 284
SLP AT PP A++A + ++ P K N AG S PP P+ +
Sbjct: 1606 SLPAATPPPPPQPPKAELAEREWERPPMAKEGNE-AGPSSPPDPLPNE-----------A 1653
Query: 285 AKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQL 339
A+ ++AL++N G V Q + G+Q P PP PP P L
Sbjct: 1654 ARTAAKALLENFGFEL----------------VIQYNEGKQAVPPPPTPPPPEAL 1692
Score = 35.0 bits (79), Expect = 0.19
Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 27/155 (17%)
Query: 194 LGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKL 253
L S + + + + V + + S S ++ + PPA APP AS P P L
Sbjct: 2383 LFSRQHLAKLKEAVRAQLKSESKCYDLAPAPEAPPALKAPPATTP----ASMPLGAAPTL 2438
Query: 254 KTKNGI--AGSSLPPPPIKHNMDIGTWDNKGPVAKA----------PSQALVQNIGQPTQ 301
+ +G +L PP+ + N GP A + P+ +VQ G
Sbjct: 2439 PRLAPVLLSGPALAQPPLGNLAPF----NSGPAASSGLLGLATSVLPTTTVVQTAGPGRP 2494
Query: 302 GSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQP 336
+P+ Q N S T P+P PP +P
Sbjct: 2495 LPQRPMPDQTNTS-------TAGTTDPVPGPPTEP 2522
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 42.7 bits (99), Expect = 0.001
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 28/115 (24%)
Query: 225 SLPPATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPV 284
SLP AT PP A++A + ++ P K N AG S PP P+ +
Sbjct: 1522 SLPAATPPPPPQPPKAELAEREWERPPMAKEGNE-AGPSSPPDPLPNE-----------A 1569
Query: 285 AKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQL 339
A+ ++AL++N G V Q + G+Q P PP PP P L
Sbjct: 1570 ARTAAKALLENFGFEL----------------VIQYNEGKQAVPPPPTPPPPEAL 1608
Score = 35.0 bits (79), Expect = 0.19
Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 27/155 (17%)
Query: 194 LGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKL 253
L S + + + + V + + S S ++ + PPA APP AS P P L
Sbjct: 2299 LFSRQHLAKLKEAVRAQLKSESKCYDLAPAPEAPPALKAPPATTP----ASMPLGAAPTL 2354
Query: 254 KTKNGI--AGSSLPPPPIKHNMDIGTWDNKGPVAKA----------PSQALVQNIGQPTQ 301
+ +G +L PP+ + N GP A + P+ +VQ G
Sbjct: 2355 PRLAPVLLSGPALAQPPLGNLAPF----NSGPAASSGLLGLATSVLPTTTVVQTAGPGRP 2410
Query: 302 GSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQP 336
+P+ Q N S T P+P PP +P
Sbjct: 2411 LPQRPMPDQTNTS-------TAGTTDPVPGPPTEP 2438
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 42.7 bits (99), Expect = 0.001
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 28/115 (24%)
Query: 225 SLPPATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPV 284
SLP AT PP A++A + ++ P K N AG S PP P+ +
Sbjct: 1522 SLPAATPPPPPQPPKAELAEREWERPPMAKEGNE-AGPSSPPDPLPNE-----------A 1569
Query: 285 AKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQL 339
A+ ++AL++N G V Q + G+Q P PP PP P L
Sbjct: 1570 ARTAAKALLENFGFEL----------------VIQYNEGKQAVPPPPTPPPPEAL 1608
Score = 35.0 bits (79), Expect = 0.19
Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 27/155 (17%)
Query: 194 LGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKL 253
L S + + + + V + + S S ++ + PPA APP AS P P L
Sbjct: 2299 LFSRQHLAKLKEAVRAQLKSESKCYDLAPAPEAPPALKAPPATTP----ASMPLGAAPTL 2354
Query: 254 KTKNGI--AGSSLPPPPIKHNMDIGTWDNKGPVAKA----------PSQALVQNIGQPTQ 301
+ +G +L PP+ + N GP A + P+ +VQ G
Sbjct: 2355 PRLAPVLLSGPALAQPPLGNLAPF----NSGPAASSGLLGLATSVLPTTTVVQTAGPGRP 2410
Query: 302 GSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQP 336
+P+ Q N S T P+P PP +P
Sbjct: 2411 LPQRPMPDQTNTS-------TAGTTDPVPGPPTEP 2438
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 42.7 bits (99), Expect = 0.001
Identities = 40/128 (31%), Positives = 47/128 (36%), Gaps = 20/128 (15%)
Query: 229 ATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAP 288
A PPKPA A PA Q L LP PP+ + D + P
Sbjct: 877 AAALPPKPAR--PPAVSPALTQTPL----------LPQPPMAQPPQVLLEDEEPPAPPLT 924
Query: 289 SQAL------VQNIGQPTQGSP--QPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLS 340
S + +Q + PT P + Q PP SV QQ Q PPPPP P
Sbjct: 925 SMQMQLYLQQLQKVQPPTPLLPSVKVQSQPPPPLPPPPHPSVQQQLQQQPPPPPPPQPQP 984
Query: 341 VQQQAAQP 348
QQ QP
Sbjct: 985 PPQQQHQP 992
Score = 38.1 bits (87), Expect = 0.022
Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 19/133 (14%)
Query: 227 PPATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDI-------GTWD 279
PP PP P P P + + A S PPP I + + +D
Sbjct: 759 PPPQQPPPPPPPQQQQQPPPPPPPPSMPQQAAPAMKSSPPPFIATQVPVLEPQLPGSVFD 818
Query: 280 NKG----PVAKAPSQALVQNIGQPTQGSPQP-VGQQANNSPPVAQASVGQQ-------TQ 327
G P+ P L ++ QP + S P + Q A SPP ++ QQ
Sbjct: 819 PIGHFTQPILHLPQPELPPHLPQPPEHSTPPHLNQHAVVSPPALHNALPQQPSRPSNRAA 878
Query: 328 PLPPPPPQPAQLS 340
LPP P +P +S
Sbjct: 879 ALPPKPARPPAVS 891
Score = 36.6 bits (83), Expect = 0.065
Identities = 35/112 (31%), Positives = 42/112 (37%), Gaps = 31/112 (27%)
Query: 227 PPATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAK 286
PP PP P+ + +P P PPP +H PV
Sbjct: 955 PPPLPPPPHPSVQQQLQQQPPPPPPP---------QPQPPPQQQHQPP------PRPVHL 999
Query: 287 APSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQ 338
P Q +I QP P P GQQ + PP GQQ PPPPQPA+
Sbjct: 1000 QPMQ-FSTHIQQP----PPPQGQQPPHPPP------GQQ-----PPPPQPAK 1035
Score = 34.7 bits (78), Expect = 0.25
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 293 VQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWV 352
+Q P P P QQ PP Q QQ P PPPPP Q + + P ++
Sbjct: 746 MQQAPAPVPQQPPPPPQQPPPPPPPQQ----QQQPPPPPPPPSMPQQAAPAMKSSPPPFI 801
Query: 353 A 353
A
Sbjct: 802 A 802
Score = 33.9 bits (76), Expect = 0.42
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 298 QPTQGSPQPVGQQA----NNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQP 348
Q Q +P PV QQ PP QQ P PPPP P Q + +++ P
Sbjct: 744 QQMQQAPAPVPQQPPPPPQQPPPPPPPQQQQQPPPPPPPPSMPQQAAPAMKSSPP 798
Score = 33.9 bits (76), Expect = 0.42
Identities = 30/103 (29%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 248 KQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPV 307
K QP + S PPPP+ P + Q L Q P PQP
Sbjct: 937 KVQPPTPLLPSVKVQSQPPPPLPP-----------PPHPSVQQQLQQQPPPPPPPQPQPP 985
Query: 308 GQQANNSPP--VAQASVGQQTQPLPPPPPQPAQLSVQQQAAQP 348
QQ + PP V + T PPPPQ Q QP
Sbjct: 986 PQQQHQPPPRPVHLQPMQFSTHIQQPPPPQGQQPPHPPPGQQP 1028
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 42.7 bits (99), Expect = 0.001
Identities = 53/213 (24%), Positives = 75/213 (35%), Gaps = 47/213 (22%)
Query: 227 PPATIAPPKPASWADIASKPAKQQPKLKTKNGI------AGSSLPP-------------- 266
PP PP+P P +Q+P + + + AGS LP
Sbjct: 461 PPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPAS 520
Query: 267 ---PPI----KHNMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQ-----PVGQQANNS 314
PP + + + P A+ P+ Q P Q + Q P +A+ +
Sbjct: 521 QAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGA 580
Query: 315 PPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAP----RNRGSGFGHNGVDGNG 370
PP GQQ Q P PP PA + Q A P P + R SG G G
Sbjct: 581 PPG-----GQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQ 635
Query: 371 VGQSQAGSGSTPS------EPHPVLEKLRSINN 397
+ Q + P+ PHP L K +S+ N
Sbjct: 636 LAQKPSQDVPPPATAAAGGPPHPQLNKSQSLTN 668
Score = 35.4 bits (80), Expect = 0.14
Identities = 39/151 (25%), Positives = 53/151 (35%), Gaps = 33/151 (21%)
Query: 212 GSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQ--PKLKTKNGIAGSSLPPPPI 269
G G + + PPA P P+ P +Q P+ + ++G P PP
Sbjct: 528 GQGRQSRPVAGGPGAPPAARPPASPS--------PQRQAGPPQATRQTSVSG---PAPPK 576
Query: 270 KHNMDIGTWDNKGPVAKAPSQA----------LVQNIGQPTQGSPQPVGQQANNSPPVAQ 319
G +GP K P A V G PT P+P G P
Sbjct: 577 ASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQL 636
Query: 320 ASVGQQTQPLPPP-------PPQPAQLSVQQ 343
A + +Q +PPP PP P QL+ Q
Sbjct: 637 AQ--KPSQDVPPPATAAAGGPPHP-QLNKSQ 664
Score = 31.6 bits (70), Expect = 2.1
Identities = 30/109 (27%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Query: 285 AKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPL-----PPPPPQPAQL 339
++ P+ Q P G PQP PP+ Q Q Q L P P P +L
Sbjct: 449 SQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRL 508
Query: 340 -SVQQQAAQPTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTPSEPHP 387
S QP AP +G G V G G + P+ P P
Sbjct: 509 PSPTSAPQQPASQAAPPTQGQGRQSRPVAG---GPGAPPAARPPASPSP 554
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 42.7 bits (99), Expect = 0.001
Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 29/170 (17%)
Query: 200 ASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKNGI 259
A + V + S + S V + + PA P PA +AS K++ +
Sbjct: 483 AVTLQDTVSDRLASEELPSTAVPTPATTPAPAPAPAPAPAPALASAATKERTE------- 535
Query: 260 AGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANN-SPPVA 318
S +PP P + + PV + +PT PQ G +++ +PP+
Sbjct: 536 --SEVPPRPASPKVTRSPPETAAPVEDMARRTKRPAPARPTMPPPQVSGSRSSPPAPPLP 593
Query: 319 QAS-------------VGQQTQ------PLPPPPPQPAQLSVQQQAAQPT 349
S VG + PLPP PPQPA+ ++ A P+
Sbjct: 594 PGSGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPARRQSRRSPASPS 643
Score = 30.4 bits (67), Expect = 4.7
Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 14/151 (9%)
Query: 207 VGSAVGSGSITSNIVASNSLPPATIAPPKPAS----WADIASKPAKQQPKLKTKNGIAGS 262
+ SA S + + P T +PP+ A+ A +PA +P +
Sbjct: 525 LASAATKERTESEVPPRPASPKVTRSPPETAAPVEDMARRTKRPAPARPTMPPPQVSGSR 584
Query: 263 SLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPT------QGSPQPVGQQANNSPP 316
S PP P + G+ P A P + + ++ PT PQP +Q+ SP
Sbjct: 585 SSPPAP---PLPPGSGSPGTPQA-LPRRLVGSSLRAPTVPPPLPPTPPQPARRQSRRSPA 640
Query: 317 VAQASVGQQTQPLPPPPPQPAQLSVQQQAAQ 347
+ P P PAQ+ + A+
Sbjct: 641 SPSPASPGPASPSPVSLSNPAQVDLGAATAE 671
Score = 29.6 bits (65), Expect = 7.9
Identities = 32/133 (24%), Positives = 45/133 (33%), Gaps = 27/133 (20%)
Query: 220 IVASNSLPPATIAPPKPASWADIASKPAKQQ--PKLKTKNGIAGSSLPPP-PIKHNMDIG 276
+ S S PPA PP S P Q P+ + + ++PPP P
Sbjct: 580 VSGSRSSPPAPPLPPGSGS-------PGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPAR 632
Query: 277 TWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQ---------ANNSPPVAQASVGQQTQ 327
+ P + +P+ P SP PV A +A G T
Sbjct: 633 RQSRRSPASPSPAS--------PGPASPSPVSLSNPAQVDLGAATAEGGAPEAISGVPTP 684
Query: 328 PLPPPPPQPAQLS 340
P PP P+P L+
Sbjct: 685 PAIPPQPRPRSLA 697
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 42.4 bits (98), Expect = 0.001
Identities = 38/132 (28%), Positives = 47/132 (35%), Gaps = 19/132 (14%)
Query: 256 KNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSP 315
+ G+ PPP +G N+GP+ P Q+ P P P Q P
Sbjct: 25 RGGLHDFRSPPP------GMGLNQNRGPMGPGPGQS------GPKPPIPPPPPHQQQQQP 72
Query: 316 PVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSGFGHNGVDGNGVGQSQ 375
P Q Q PPP PQP Q QQQ P + + G G GVG +
Sbjct: 73 PPQQPPPQQPPPHQPPPHPQPHQ---QQQPPPPPQDSSKPVVAQGPG----PAPGVGSAP 125
Query: 376 AGSGSTPSEPHP 387
S S P P
Sbjct: 126 PASSSAPPATPP 137
Score = 34.3 bits (77), Expect = 0.32
Identities = 42/172 (24%), Positives = 52/172 (30%), Gaps = 14/172 (8%)
Query: 223 SNSLPPATIAPPKPASWADIASKPAKQQP---KLKTKNGIAGSSLPPPPIKHNMDIGTWD 279
S PP PP +P QQP + PPPP + +
Sbjct: 54 SGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQ 113
Query: 280 NKGPV----AKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQ 335
GP + P+ + PT G+P G +PP A S P PPP
Sbjct: 114 GPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSA-----PPGAPPPT 168
Query: 336 PAQLSVQQQAAQPTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTPSEPHP 387
P V Q P G G G G G + G P P P
Sbjct: 169 PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPK--GGKMPGGPKP 218
>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform a [Homo sapiens]
Length = 1214
Score = 42.4 bits (98), Expect = 0.001
Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 21/138 (15%)
Query: 200 ASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKNGI 259
A+ P V G AV S+ A + PP ++ P + A + P +QQP + G
Sbjct: 977 AAGPPAVHGLAVAPASVVP-APAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGA 1035
Query: 260 AGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQ 319
+PPP GP +P Q T S P + P VA
Sbjct: 1036 VPPGVPPP--------------GPHGPSPFP------NQQTPPSMMPGAVPGSGHPGVAG 1075
Query: 320 ASVGQQTQPLPPPPPQPA 337
+ +PPPPP PA
Sbjct: 1076 NAPLGLPFGMPPPPPPPA 1093
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 42.0 bits (97), Expect = 0.002
Identities = 42/139 (30%), Positives = 57/139 (41%), Gaps = 17/139 (12%)
Query: 208 GSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQ----QPKLKTKNGIAGSS 263
GS VGSGS ++V S L PP P I KP P ++G AG
Sbjct: 600 GSDVGSGS--GDLVGSEQLLRGPPGPPGPPGLPGIPGKPGTDVFMGPPGSPGEDGPAGEP 657
Query: 264 LPP-PPIKHNMD-----IGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPV 317
PP P + +D G KG A+ P+ ++ + +G P P G++ PP
Sbjct: 658 GPPGPEGQPGVDGATGLPGMKGEKG--ARGPNGSVGEKGDPGNRGLPGPPGKKGQAGPP- 714
Query: 318 AQASVGQQTQPLPPPPPQP 336
+G P PP PP P
Sbjct: 715 --GVMGPPGPPGPPGPPGP 731
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.129 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,028,021
Number of Sequences: 37866
Number of extensions: 1552859
Number of successful extensions: 12095
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 600
Number of HSP's that attempted gapping in prelim test: 8582
Number of HSP's gapped (non-prelim): 2886
length of query: 579
length of database: 18,247,518
effective HSP length: 108
effective length of query: 471
effective length of database: 14,157,990
effective search space: 6668413290
effective search space used: 6668413290
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.