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Search of human proteins with 239746814
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
(258 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 533 e-152
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 533 e-152
gi|163965366 nascent polypeptide-associated complex alpha subuni... 54 1e-07
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 53 3e-07
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 53 3e-07
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 53 3e-07
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 52 4e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 50 1e-06
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 50 3e-06
gi|110832843 TBP-associated factor 4 [Homo sapiens] 49 3e-06
gi|33286446 opioid growth factor receptor [Homo sapiens] 48 7e-06
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 48 7e-06
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 48 7e-06
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 48 7e-06
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 48 7e-06
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 48 7e-06
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 48 1e-05
gi|239753324 PREDICTED: hypothetical protein [Homo sapiens] 48 1e-05
gi|18702331 OTU domain containing 7A [Homo sapiens] 48 1e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 47 1e-05
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 47 2e-05
gi|169218002 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 47 2e-05
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 47 2e-05
gi|169163057 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 47 2e-05
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 47 2e-05
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 47 2e-05
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 47 2e-05
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 47 2e-05
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 533 bits (1374), Expect = e-152
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MSPERIMASPVSCRKRTRRCLKSQMVRMVSVSSRMKVSRLTLSCRWLSSASFSVASSSMA 60
MSPERIMASPVSCRKRTRRCLKSQMVRMVSVSSRMKVSRLTLSCRWLSSASFSVASSSMA
Sbjct: 1 MSPERIMASPVSCRKRTRRCLKSQMVRMVSVSSRMKVSRLTLSCRWLSSASFSVASSSMA 60
Query: 61 LLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPP 120
LLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPP
Sbjct: 61 LLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPP 120
Query: 121 PSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRP 180
PSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRP
Sbjct: 121 PSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRP 180
Query: 181 RTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPV 240
RTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPV
Sbjct: 181 RTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPV 240
Query: 241 HGQPPPHFRKGTPEVAGA 258
HGQPPPHFRKGTPEVAGA
Sbjct: 241 HGQPPPHFRKGTPEVAGA 258
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 533 bits (1374), Expect = e-152
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MSPERIMASPVSCRKRTRRCLKSQMVRMVSVSSRMKVSRLTLSCRWLSSASFSVASSSMA 60
MSPERIMASPVSCRKRTRRCLKSQMVRMVSVSSRMKVSRLTLSCRWLSSASFSVASSSMA
Sbjct: 1 MSPERIMASPVSCRKRTRRCLKSQMVRMVSVSSRMKVSRLTLSCRWLSSASFSVASSSMA 60
Query: 61 LLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPP 120
LLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPP
Sbjct: 61 LLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPP 120
Query: 121 PSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRP 180
PSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRP
Sbjct: 121 PSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRP 180
Query: 181 RTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPV 240
RTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPV
Sbjct: 181 RTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPV 240
Query: 241 HGQPPPHFRKGTPEVAGA 258
HGQPPPHFRKGTPEVAGA
Sbjct: 241 HGQPPPHFRKGTPEVAGA 258
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 54.3 bits (129), Expect = 1e-07
Identities = 64/215 (29%), Positives = 82/215 (38%), Gaps = 29/215 (13%)
Query: 51 SFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGA---PVARPEPGRAA 107
+ S+ SSS + AP+ + + +P P ++ S +GG A P P P AA
Sbjct: 910 ALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPP-AA 968
Query: 108 SPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGR 167
+P S GP P P G P P+A S P P P +G A
Sbjct: 969 TPPSPKGGPATPSPKGAPTP-PAATPPSPKGGPATPSP----------KGAPTPPAVTPP 1017
Query: 168 AQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH---PGGAGCCPRVCGPAAGCLPLCASH 224
+ GSP+ P P+ S+P ATP P G P+ P GA P A LP
Sbjct: 1018 SP-KGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTP------AATLPSPKGG 1070
Query: 225 PVLAHLPRQSGVVGPVHGQPP-PHFRKGTPEVAGA 258
P P G P PP P TP GA
Sbjct: 1071 PA---TPSLKGAPTPPAATPPSPKGGPATPSPKGA 1102
Score = 45.4 bits (106), Expect = 5e-05
Identities = 49/160 (30%), Positives = 66/160 (41%), Gaps = 21/160 (13%)
Query: 63 SSAAAPEEEAEAAAATRSPQ-----PSSSGSSSSRGGGAPVARPEPGR-AASPGSMVPGP 116
++ AA + AT SP+ P+++ S G P + P AA+P S GP
Sbjct: 1196 TTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGP 1255
Query: 117 PAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPST 176
PPP G P P A + P L+ L P +G A A G P+T
Sbjct: 1256 ATPPPKG--APTPPAAT---------PPSLKGGLATPPHKG-APNPAVVTPPSPKGGPAT 1303
Query: 177 APRPRTCSSPGRATPHRPAGQPS--HPGGAGCCPRVCGPA 214
+P P+ +P ATP P G P P GA P V P+
Sbjct: 1304 SP-PKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPS 1342
Score = 43.9 bits (102), Expect = 1e-04
Identities = 46/195 (23%), Positives = 61/195 (31%), Gaps = 32/195 (16%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAP--PPSGDQ 125
P+E A ++P S + SS + P + P + G+ P P P G
Sbjct: 896 PKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPA 955
Query: 126 QPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSS 185
P+P A P P G P+T P P+ +
Sbjct: 956 TPSPKWAPTPPAATPPSP---------------------------KGGPAT-PSPKGAPT 987
Query: 186 PGRATPHRPAGQPSHPG--GAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPVHGQ 243
P ATP P G P+ P GA P V P+ P P A P + P
Sbjct: 988 PPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSP 1047
Query: 244 PPPHFRKGTPEVAGA 258
KG P A
Sbjct: 1048 AATPLPKGAPTTPAA 1062
Score = 39.7 bits (91), Expect = 0.003
Identities = 49/204 (24%), Positives = 66/204 (32%), Gaps = 10/204 (4%)
Query: 65 AAAPEEEAEAAAATRSPQ-----PSSSGSSSSRGGGAPVARPEPGR-AASPGSMVPGPPA 118
AA P + AAT P+ P+++ S G P + P AA+P S GP
Sbjct: 1037 AATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPAT 1096
Query: 119 PPPSGDQQP---APSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPS 175
P P G P P + G A P P +G +G +
Sbjct: 1097 PSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATP 1156
Query: 176 TAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCG-PAAGCLPLCASHPVLAHLPRQS 234
+P+ + P + P PA P P G P G P + LA +
Sbjct: 1157 PSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKG 1216
Query: 235 GVVGPVHGQPPPHFRKGTPEVAGA 258
P P P TP GA
Sbjct: 1217 APTTPAATPPSPKGGLATPSPKGA 1240
Score = 37.4 bits (85), Expect = 0.013
Identities = 40/145 (27%), Positives = 48/145 (33%), Gaps = 38/145 (26%)
Query: 65 AAAPEEEAEAAAATRSPQPSSSGSSSS-RGGGAPVARPEPGRAASPGSMVPGPPAPPPSG 123
A P + A A P P ++S +G P A P SPG+ P AP P
Sbjct: 1279 ATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPP-KGAPTPPA 1337
Query: 124 DQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTC 183
P+P T LP A +PS+ P T
Sbjct: 1338 VTPPSPK----GTPTLP------------------------------ATTPSSKGGPTTP 1363
Query: 184 SSPGRATPHRPAGQPSHPGGAGCCP 208
SS TP PA PSH GG P
Sbjct: 1364 SSKEGPTP--PAATPSHKGGPAMTP 1386
Score = 34.3 bits (77), Expect = 0.11
Identities = 38/152 (25%), Positives = 50/152 (32%), Gaps = 20/152 (13%)
Query: 63 SSAAAPEEEAEAAAATRSPQPSSSGS------SSSRGGGAPVARPEPGRAASPGSMVPGP 116
S P + A A P P + + SS G P ++ P A+ S GP
Sbjct: 1323 SPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGP 1382
Query: 117 PAPPPS---GDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGS 173
PPS G P+P S A +P L+P + A EG A +
Sbjct: 1383 AMTPPSPKRGPAIPSPKGDPTSPAVIP-----------LSPKKAPATPVTREGAATPSKG 1431
Query: 174 PSTAPRPRTCSSPGRATPHRPAGQPSHPGGAG 205
T P S P G P+ P G
Sbjct: 1432 DLTPPAVTPVSLKKAPATSAPKGGPATPSSKG 1463
Score = 29.6 bits (65), Expect = 2.7
Identities = 57/220 (25%), Positives = 73/220 (33%), Gaps = 29/220 (13%)
Query: 55 ASSSMALLSSAAAPEEEAEAAAATRSPQ-----PSSSGSSSSRGGGAPVAR--PEPGRAA 107
A+ S L+ A + A AT +P+ PSS G + P + P P + A
Sbjct: 1426 ATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVA 1485
Query: 108 SPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWP-------WPLQLLLLLAPGRGCAR 160
+ S P P P G P+ S ++P P P LL A
Sbjct: 1486 TSSSPKKAPATPAPMG-APTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAP 1544
Query: 161 GRAGEGRAQCAGSPSTAP-------RPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGP 213
A A SP P P T SS ++P PA PS GA + P
Sbjct: 1545 KEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSP--PAVTPSTYKGAPSPKELLIP 1602
Query: 214 AAGCLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
A P P + S GP P KGTP
Sbjct: 1603 PAVTSPSPKEAPTPPAVTPPSPEKGPATPAP-----KGTP 1637
Score = 29.3 bits (64), Expect = 3.6
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAP--------VARPEPGRAASPGSMVP----- 114
P+E ++ + P + S+ +G +P V P P A +P ++ P
Sbjct: 1567 PKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEK 1626
Query: 115 GPPAPPPSGDQQPAPSAGSGSTADLPEWP 143
GP P P G P S S D P P
Sbjct: 1627 GPATPAPKGTPTSPPVTPS-SLKDSPTSP 1654
Score = 28.5 bits (62), Expect = 6.1
Identities = 49/177 (27%), Positives = 60/177 (33%), Gaps = 49/177 (27%)
Query: 54 VASSSMALLSSAAAPEEEAEAAAAT------RSPQPSSSGSSSSRGGGAPVA----RPEP 103
VA+SS S AP A A T SP+ + SS R AP A + P
Sbjct: 1484 VATSS----SPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTP 1539
Query: 104 GRAAS------PGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPE---------WPWPLQL 148
A P VP P P + AP+ S A P P P +L
Sbjct: 1540 ATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKEL 1599
Query: 149 LLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSP----GRATPHRPAGQPSHP 201
L+ A + SP AP P + P G ATP P G P+ P
Sbjct: 1600 LI---------------PPAVTSPSPKEAPTPPAVTPPSPEKGPATP-APKGTPTSP 1640
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 52.8 bits (125), Expect = 3e-07
Identities = 51/179 (28%), Positives = 63/179 (35%), Gaps = 24/179 (13%)
Query: 47 LSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRA 106
L +FS S++ +S A P+ AA P+ S S G P P +
Sbjct: 54 LERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQH 113
Query: 107 ASPGSMVPGPPAPPP---SGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRA 163
S + P P P P S PAP+A + P A G G
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPG----------RAASGGSGPGSR 163
Query: 164 GEGRAQCAGSPSTA---PRPRTCSSPGRATPHRPAGQPSHPG-------GAGCCPRVCG 212
G+G Q PS A P P TC RA P R A PG G+G R CG
Sbjct: 164 GQGSDQVGARPSRAGGQPPPLTCRR-CRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG 221
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 52.8 bits (125), Expect = 3e-07
Identities = 51/179 (28%), Positives = 63/179 (35%), Gaps = 24/179 (13%)
Query: 47 LSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRA 106
L +FS S++ +S A P+ AA P+ S S G P P +
Sbjct: 54 LERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQH 113
Query: 107 ASPGSMVPGPPAPPP---SGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRA 163
S + P P P P S PAP+A + P A G G
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPG----------RAASGGSGPGSR 163
Query: 164 GEGRAQCAGSPSTA---PRPRTCSSPGRATPHRPAGQPSHPG-------GAGCCPRVCG 212
G+G Q PS A P P TC RA P R A PG G+G R CG
Sbjct: 164 GQGSDQVGARPSRAGGQPPPLTCRR-CRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG 221
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 52.8 bits (125), Expect = 3e-07
Identities = 51/179 (28%), Positives = 63/179 (35%), Gaps = 24/179 (13%)
Query: 47 LSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRA 106
L +FS S++ +S A P+ AA P+ S S G P P +
Sbjct: 54 LERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQH 113
Query: 107 ASPGSMVPGPPAPPP---SGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRA 163
S + P P P P S PAP+A + P A G G
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPG----------RAASGGSGPGSR 163
Query: 164 GEGRAQCAGSPSTA---PRPRTCSSPGRATPHRPAGQPSHPG-------GAGCCPRVCG 212
G+G Q PS A P P TC RA P R A PG G+G R CG
Sbjct: 164 GQGSDQVGARPSRAGGQPPPLTCRR-CRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG 221
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 52.4 bits (124), Expect = 4e-07
Identities = 62/198 (31%), Positives = 71/198 (35%), Gaps = 34/198 (17%)
Query: 71 EAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAAS------------PGSMVPGPPA 118
E ++ T+S Q S G + GG + A P+ GR PG PG P
Sbjct: 168 EMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPP 227
Query: 119 PP-PSGDQQPAPSAGSGSTADLPEWPWPLQLL---LLLAPGRGCARGRAGEGRAQCAGSP 174
PP P+G P P G P P P Q+L L P RG Q G P
Sbjct: 228 PPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQP 287
Query: 175 STAPRP--RTCSSPGRATPHRP----AGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLA 228
P P PG P P G P PG PR GP PL + P
Sbjct: 288 PLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFP--PRPPGPLGP--PLTLAPP--P 341
Query: 229 HLPRQSGVVGPVHGQPPP 246
HLP GP G PPP
Sbjct: 342 HLP------GPPPGAPPP 353
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 50.4 bits (119), Expect = 1e-06
Identities = 60/187 (32%), Positives = 66/187 (35%), Gaps = 35/187 (18%)
Query: 83 PSSSGSSSSRGGGAPV-ARPEPGRAASPGSMVPGPPAPPPSGDQQPAPS---AGSGSTAD 138
P G S G P AR PG PG P A PP D QP +G+ D
Sbjct: 778 PGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGD 837
Query: 139 L-------PEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATP 191
P P P + + APG ARG AG A G P A R G A P
Sbjct: 838 AGPPGPAGPAGP-PGPIGNVGAPGAKGARGSAGPPGA--TGFPGAAGRVGPPGPSGNAGP 894
Query: 192 HRPAGQPSHPGGAGCCPR-VCGPAAGCLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRK 250
P G GG G PR GPA + G VGP G P P K
Sbjct: 895 PGPPGPAGKEGGKG--PRGETGPAG-----------------RPGEVGP-PGPPGPAGEK 934
Query: 251 GTPEVAG 257
G+P G
Sbjct: 935 GSPGADG 941
Score = 49.3 bits (116), Expect = 3e-06
Identities = 61/203 (30%), Positives = 75/203 (36%), Gaps = 28/203 (13%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPG-------SMVPGPPAPP 120
P A AA + P + G ++G A PG A +PG S GP PP
Sbjct: 373 PGPPGPAGAAGPAGNPGADGQPGAKG-----ANGAPGIAGAPGFPGARGPSGPQGPGGPP 427
Query: 121 -PSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAP-GRGCARGRAGE-GRAQCAGSPSTA 177
P G+ + GS P P+ + P G RG GE G G P
Sbjct: 428 GPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGER 487
Query: 178 PRPRTCSSPGR---ATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQS 234
P + PG A P PAG+ PG AG P+ AG P A LP
Sbjct: 488 GGPGSRGFPGADGVAGPKGPAGERGSPGPAG--PKGSPGEAG-------RPGEAGLPGAK 538
Query: 235 GVVGPVHGQPPPHFRKGTPEVAG 257
G+ G G P P + G P AG
Sbjct: 539 GLTGS-PGSPGPDGKTGPPGPAG 560
Score = 45.4 bits (106), Expect = 5e-05
Identities = 53/187 (28%), Positives = 71/187 (37%), Gaps = 14/187 (7%)
Query: 72 AEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGS--MVPGPPAPPPSGDQQPAP 129
A+ A + P + G+P PG A PG+ + P +P P G P
Sbjct: 498 ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPG 557
Query: 130 SAGSGSTADLPEWPWPL-QLLLLLAPG-RGCA--RGRAGE-GRAQCAGSPSTAPRPRTCS 184
AG P P Q ++ PG +G A G+AGE G G+ A +
Sbjct: 558 PAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAG 617
Query: 185 SPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPVHGQP 244
+ G P PAG+ G AG P LP A P A P + GV G + G P
Sbjct: 618 AQGPPGPAGPAGERGEQGPAG------SPGFQGLPGPAGPPGEAGKPGEQGVPGDL-GAP 670
Query: 245 PPHFRKG 251
P +G
Sbjct: 671 GPSGARG 677
Score = 41.6 bits (96), Expect = 7e-04
Identities = 60/207 (28%), Positives = 75/207 (36%), Gaps = 39/207 (18%)
Query: 83 PSSSGSSSSRGGGAPVARPEPGRAASPGSM-VPGPPAPPPSGDQQPAPSAGSGSTADLPE 141
P G+S G AP ++ + G PG + V GPP P +G++ + G LP
Sbjct: 427 PGPKGNSGEPG--APGSKGDTGAKGEPGPVGVQGPPGP--AGEEGKRGARGEPGPTGLPG 482
Query: 142 WPW----PLQLLLLLAPGRGCARGRAGE----GRAQCAGSPSTAPRPRTCSSP------- 186
P P A G +G AGE G A GSP A RP P
Sbjct: 483 PPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 542
Query: 187 --------GRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPL-----CASHPVLA---HL 230
G+ P PAGQ PG G P AG + A P A +
Sbjct: 543 SPGSPGPDGKTGPPGPAGQDGRPGPPG--PPGARGQAGVMGFPGPKGAAGEPGKAGERGV 600
Query: 231 PRQSGVVGPVHGQPPPHFRKGTPEVAG 257
P G VGP G+ +G P AG
Sbjct: 601 PGPPGAVGPA-GKDGEAGAQGPPGPAG 626
Score = 40.4 bits (93), Expect = 0.002
Identities = 50/177 (28%), Positives = 59/177 (33%), Gaps = 32/177 (18%)
Query: 83 PSSSGSSSSRGGGAPVARP-EPGRAASPGSM----VPG-------PPAPPPSGDQ-QPAP 129
P +G S G P P PG G +PG P P PSG+ + P
Sbjct: 928 PGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGP 987
Query: 130 SAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAG-EGRAQCAGSPSTAPRPRTCSSPGR 188
S SG P P+ PG G +G EG GSP P G
Sbjct: 988 SGASGERGP----PGPMG-----PPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE 1038
Query: 189 ATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPVHGQPP 245
P P G P PG P GPA + P +G VGPV + P
Sbjct: 1039 TGPAGPPGAPGAPG----APGPVGPAGKSGDRGETGPA-----GPAGPVGPVGARGP 1086
Score = 40.0 bits (92), Expect = 0.002
Identities = 59/223 (26%), Positives = 73/223 (32%), Gaps = 36/223 (16%)
Query: 65 AAAPEEEAEAAAATRSPQPSSSGSSSSRG----------------GGAPVARPEPGRAAS 108
A AP ++ E+ + + + G+ RG G P A+ EPG A +
Sbjct: 775 AGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGA 834
Query: 109 PGSMVP----GPPAPP-PSGDQ-QPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGR 162
G P GP PP P G+ P GS +P + PG G
Sbjct: 835 KGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP 894
Query: 163 AG-------EGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAA 215
G EG G A RP PG P G P G AG P GP
Sbjct: 895 PGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAG-APGTPGPQG 953
Query: 216 GCLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTPEVAGA 258
A + LP Q G G G P P G +GA
Sbjct: 954 -----IAGQRGVVGLPGQRGERG-FPGLPGPSGEPGKQGPSGA 990
Score = 39.7 bits (91), Expect = 0.003
Identities = 59/205 (28%), Positives = 70/205 (34%), Gaps = 34/205 (16%)
Query: 82 QPSSSGSSSSRGG-GAPVARPEPGRAASPGSMVPGPPAPP-PSGDQQPAPSAG------- 132
+P +SG RG G P + G A PG PG PP P G + +AG
Sbjct: 210 EPGASGPMGPRGPPGPPGKNGDDGEAGKPGR--PGERGPPGPQGARGLPGTAGLPGMKGH 267
Query: 133 ------SGSTADL-PEWPW--PLQLLLLLAPGRGCARGRAGE-GRAQCAGSPSTAPRPRT 182
G+ D P P P APG+ RG GE GR G
Sbjct: 268 RGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGA 327
Query: 183 CSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAH----LPRQSGVVG 238
+ G P PAG P PG G G A P + P P +G G
Sbjct: 328 TGAAGPPGPTGPAGPPGFPGAVG----AKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAG 383
Query: 239 P-----VHGQPPPHFRKGTPEVAGA 258
P GQP G P +AGA
Sbjct: 384 PAGNPGADGQPGAKGANGAPGIAGA 408
Score = 38.5 bits (88), Expect = 0.006
Identities = 52/187 (27%), Positives = 60/187 (32%), Gaps = 36/187 (19%)
Query: 83 PSSSGSSSSRGG-GAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPA-PSAGSGSTADLP 140
P + G+ G GAP ++ PG PG P P GD+ A P GS
Sbjct: 703 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGER-GAAGLPGPKGDRGDAGPKGADGS----- 756
Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
PG+ RG G G P A P G + P P G
Sbjct: 757 -------------PGKDGVRGLTGP-----IGPPGPAGAPGDKGESGPSGPAGPTGARGA 798
Query: 201 PGGAGCCPRVCGPA-------AGCLPLCASHPVLAHLPRQSGVVGPV--HGQPPPHFRKG 251
PG G P GPA A P P A +G GP G P P G
Sbjct: 799 PGDRG-EPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVG 857
Query: 252 TPEVAGA 258
P GA
Sbjct: 858 APGAKGA 864
Score = 37.7 bits (86), Expect = 0.010
Identities = 37/126 (29%), Positives = 42/126 (33%), Gaps = 5/126 (3%)
Query: 81 PQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
P P + + + G A P PG A G PA P P P+ G
Sbjct: 601 PGPPGAVGPAGKDGEAGAQGP-PGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPG 659
Query: 141 EWPWPLQLLLLLAPGRGCARGRAG-EGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPS 199
E P L APG ARG G G G P A +PG AG P
Sbjct: 660 EQGVPGDLG---APGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPG 716
Query: 200 HPGGAG 205
PG G
Sbjct: 717 APGSQG 722
Score = 36.6 bits (83), Expect = 0.022
Identities = 55/202 (27%), Positives = 62/202 (30%), Gaps = 45/202 (22%)
Query: 87 GSSSSRGGGAPVARPE----PGRAASPGSMVPGPPAPP---------------------P 121
G + RG P P PG+ PG PGPP PP
Sbjct: 115 GDTGPRGPRGPAGPPGRDGIPGQPGLPGP--PGPPGPPGPPGLGGNFAPQLSYGYDEKST 172
Query: 122 SGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPR 181
G P P SG LP P APG +G GE A P P
Sbjct: 173 GGISVPGPMGPSGPRG-LPGPPG--------APGPQGFQGPPGEPGEPGASGPMGPRGPP 223
Query: 182 TCSSPGRATPHRPAGQPSHPGGAGCCPRVCG----PAAGCLPLCASHPVLAHLPRQSGVV 237
PG+ AG+P PG G P G P LP H + L G
Sbjct: 224 --GPPGKNGDDGEAGKPGRPGERG-PPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDA 280
Query: 238 GPV--HGQPPPHFRKGTPEVAG 257
GP G+P G P G
Sbjct: 281 GPAGPKGEPGSPGENGAPGQMG 302
Score = 35.0 bits (79), Expect = 0.065
Identities = 35/96 (36%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 111 SMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAG-EGRAQ 169
S + GPP PP S +Q PS SG P P PG A G+ G G
Sbjct: 1114 SGLQGPPGPPGSPGEQ-GPSGASGPAG--PRGP----------PGSAGAPGKDGLNGLPG 1160
Query: 170 CAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAG 205
G P PR RT G A P P G P PG G
Sbjct: 1161 PIGPPG--PRGRT----GDAGPVGPPGPPGPPGPPG 1190
Score = 32.0 bits (71), Expect = 0.55
Identities = 46/175 (26%), Positives = 57/175 (32%), Gaps = 17/175 (9%)
Query: 83 PSSSGSSSSRGG-GAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPE 141
P SG + G G+P PG G P P P P P +G + D E
Sbjct: 1009 PGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGE 1068
Query: 142 WPWPLQLLLLLAP--GRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPS 199
P + P RG A + G G G P P G P
Sbjct: 1069 -TGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPG 1127
Query: 200 HPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQ---SGVVGPVHGQPPPHFRKG 251
G +G GPA P P A P + +G+ GP+ G P P R G
Sbjct: 1128 EQGPSG----ASGPAGPRGP-----PGSAGAPGKDGLNGLPGPI-GPPGPRGRTG 1172
Score = 30.4 bits (67), Expect = 1.6
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 72 AEAAAATRSPQPSSS--GSSSSRGGGAPVARPEP-GRAASPGSM-VPGPPAPPPSGDQQP 127
A A R P S+ G G P+ P P GR G + PGPP PP P
Sbjct: 1134 ASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPG----PP 1189
Query: 128 APSAGSGSTADLPEWP 143
P + + LP+ P
Sbjct: 1190 GPPSAGFDFSFLPQPP 1205
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 49.7 bits (117), Expect = 3e-06
Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 17/162 (10%)
Query: 47 LSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRA 106
L +FS S++ +S A P+ AA P+ S S G P P +
Sbjct: 54 LERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQH 113
Query: 107 ASPGSMVPGPPAPPP---SGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRA 163
S + P P P P S PAP+A + P A G G
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPG----------RAASGGSGPGSR 163
Query: 164 GEGRAQCAGSPSTA---PRPRTCSSPGRATPHRPAGQPSHPG 202
G+G Q PS A P P TC RA P R A PG
Sbjct: 164 GQGSDQVGARPSRAGGQPPPLTCRR-CRAAPRRSARPFRRPG 204
Score = 33.1 bits (74), Expect = 0.25
Identities = 38/166 (22%), Positives = 52/166 (31%), Gaps = 33/166 (19%)
Query: 40 LTLSCRWLSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVA 99
L+ + R SS + + S + L E A + +P P S ++R P
Sbjct: 32 LSAAFRTCSSGTCRLTRSRKSRLERGTFSPESAAGTEVSGAPHPDSRTRPAARPPH-PRT 90
Query: 100 RPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCA 159
R PGR+ S + PP P A G P GC+
Sbjct: 91 RSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPG-------------------PRPGCS 131
Query: 160 RGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAG 205
RA +P P + R P R A S PG G
Sbjct: 132 SARA-------------SPAPAAPQAAARTAPGRAASGGSGPGSRG 164
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 49.3 bits (116), Expect = 3e-06
Identities = 60/207 (28%), Positives = 78/207 (37%), Gaps = 24/207 (11%)
Query: 54 VASSSMALLSSA--AAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGS 111
V S S A + A AAP E A AA P+P +G + GGG RP P P
Sbjct: 62 VVSGSPAGAAGAGPAAPAEGAPGAA----PEPPPAGRARPGGGGPQ--RPGPPSPRRP-- 113
Query: 112 MVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCA 171
+VP PA PP+ +P P +GS A +P A A G A+ A
Sbjct: 114 LVPAGPA-PPAAKLRPPPEGSAGSCAPVP-----------AAAAVAAGPEPAPAGPAKPA 161
Query: 172 GSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLP 231
G + A R PG P P P G G + G AA A+ P ++ +
Sbjct: 162 GPAALA--ARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVN 219
Query: 232 RQSGVVGPVHGQPPPHFRKGTPEVAGA 258
+ P+ P TP GA
Sbjct: 220 NGPAALLPLPKPAAPGTVIQTPPFVGA 246
Score = 40.4 bits (93), Expect = 0.002
Identities = 41/159 (25%), Positives = 53/159 (33%), Gaps = 26/159 (16%)
Query: 72 AEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPP-----APPPSGDQQ 126
A A A +P P ++ + ++ P P P A P GPP PPP+ Q
Sbjct: 246 AAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQN 305
Query: 127 -------PAPSAGSGSTADLPEWPWPLQLLLLLAPG-------------RGCARGRAGEG 166
PAP+ +G A + P P APG A+ A G
Sbjct: 306 GGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASG 365
Query: 167 RAQCAGSPSTAPRPR-TCSSPGRATPHRPAGQPSHPGGA 204
A A S P + SP P P P GA
Sbjct: 366 PASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGA 404
Score = 38.5 bits (88), Expect = 0.006
Identities = 62/223 (27%), Positives = 76/223 (34%), Gaps = 49/223 (21%)
Query: 56 SSSMALLSS--AAAPEEEAE---AAAATRSPQPSSSGSSSSR----GGGAPVARPEPGRA 106
+ S ALL+S AAAP AA P+P++ G+ G AP A P
Sbjct: 199 NGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPP 258
Query: 107 ASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEG 166
A+P P PPP PAP+ + A P P A A
Sbjct: 259 AAPAPAAPAAAPPPP----PPAPA----TLARPPGHP---------AGPPTAAPAVPPPA 301
Query: 167 RAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCP-------------RVCGP 213
AQ GS AP P +P P +GQP PG A P + P
Sbjct: 302 AAQNGGSAGAAPAP----APAAGGPAGVSGQPG-PGAAAAAPAPGVKAESPKRVVQAAPP 356
Query: 214 AAGCLPLCASHPVLAHL---PRQSGVVGPVHGQPPPHFRKGTP 253
AA L A + P G + PPP GTP
Sbjct: 357 AAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPP--APGTP 397
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 48.1 bits (113), Expect = 7e-06
Identities = 48/176 (27%), Positives = 66/176 (37%), Gaps = 23/176 (13%)
Query: 49 SASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGG--GAPVARPEPGRA 106
SA+ + + L+ + AP +A + + + G + + G G+P P P A
Sbjct: 468 SAAVASGGAQTLALAGSPAPSGHPKAGHSENGVEEDTEGRTGPKEGTPGSPSETPGPSPA 527
Query: 107 ASPG-------SMVPGPPAPPPSGDQ-QPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGC 158
G S PGP P+GD+ +PS G P P + +P
Sbjct: 528 GPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAE-----SPSETP 582
Query: 159 ARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPA 214
AG R + A SPS P PR G PA PS G PR GPA
Sbjct: 583 GPSPAGPTRDEPAESPSETPGPRPAGPAG----DEPAESPSETPG----PRPAGPA 630
Score = 38.9 bits (89), Expect = 0.004
Identities = 38/142 (26%), Positives = 50/142 (35%), Gaps = 18/142 (12%)
Query: 64 SAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSG 123
S A P + A + + +P P +G + +P P P A G PA PS
Sbjct: 525 SPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGD----EPAESPSE 580
Query: 124 DQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTC 183
P+P +G T D P +P AG + A SPS P PR
Sbjct: 581 TPGPSP---AGPTRDEP----------AESPSETPGPRPAGPAGDEPAESPSETPGPRPA 627
Query: 184 SSPGRATPHRPAGQPSHPGGAG 205
G P+ P P AG
Sbjct: 628 GPAGDEPAESPSETPG-PSPAG 648
Score = 33.9 bits (76), Expect = 0.14
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 66 AAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPG-------SMVPGPPA 118
A P + A + + +P PS +G + +P P P A G S PGP
Sbjct: 567 AGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRP 626
Query: 119 PPPSGD-------QQPAPSAGSGSTADLP 140
P+GD + P PS +G T D P
Sbjct: 627 AGPAGDEPAESPSETPGPSP-AGPTRDEP 654
Score = 33.1 bits (74), Expect = 0.25
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 64 SAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPG-----PPA 118
S A P + A + + +P P +G + +P P P R A P P P
Sbjct: 585 SPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGP-RPAGPAGDEPAESPSETPG 643
Query: 119 PPPSGDQQPAPSAGSGSTADLPE 141
P P+G + P A +G A+L +
Sbjct: 644 PSPAGPTRDEP-AKAGEAAELQD 665
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 48.1 bits (113), Expect = 7e-06
Identities = 42/122 (34%), Positives = 50/122 (40%), Gaps = 20/122 (16%)
Query: 86 SGSSSSRGGGAPVA-RPEPGRAASPGSMVPG--------PPAPPPSGDQQPAPSAGSGST 136
S SS+ GG P A P P A P S PG PP PP SG P P G T
Sbjct: 79 STSSAGTGGAEPPALSPAPASPARPVSPAPGRRLSLWAVPPGPPLSGGLSPDPKPGGAPT 138
Query: 137 ADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAG 196
+ + LL +P G G EGRA S++P P T S + P PA
Sbjct: 139 SS--------RRPLLSSPSWG---GPEPEGRAGGGIPGSSSPHPGTGSRRLKVAPPPPAP 187
Query: 197 QP 198
+P
Sbjct: 188 KP 189
Score = 44.3 bits (103), Expect = 1e-04
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 20/133 (15%)
Query: 55 ASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGS--- 111
A S ++ S P + ++A S++ ++++ GGG A G A G+
Sbjct: 206 AGSRLSWPESEGKPRVKGSKSSAGTGASVSAAATAAAAGGGGSTASTSGGVGAGAGARGK 265
Query: 112 ---------------MVPGPPA-PPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPG 155
+ PGPPA PP P PS + TA + P P + L P
Sbjct: 266 LSPRKGKSKTLDNSDLHPGPPAGSPPPLTLPPTPSPATAVTAASAQPPGPAPPITLEPPA 325
Query: 156 RGCARGRAGEGRA 168
G RGR G GRA
Sbjct: 326 PGLKRGREG-GRA 337
Score = 36.2 bits (82), Expect = 0.029
Identities = 49/206 (23%), Positives = 67/206 (32%), Gaps = 33/206 (16%)
Query: 62 LSSAAAPEEEAEAAAATRSPQPSSSGSS-------SSRGGGAP-VARPEPGRAASPGSMV 113
LS +P+ + A T S +P S S GGG P + P PG + +
Sbjct: 123 LSGGLSPDPKP-GGAPTSSRRPLLSSPSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVA 181
Query: 114 PGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGS 173
P PPAP P + + G WP EG+ + GS
Sbjct: 182 PPPPAPKPCKTVTTSGAKAGGGKGAGSRLSWP-----------------ESEGKPRVKGS 224
Query: 174 PSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQ 233
S+A + S+ A G + G G AG + +
Sbjct: 225 KSSAGTGASVSAAATAAAAGGGGSTASTSGG------VGAGAGARGKLSPRKGKSKTLDN 278
Query: 234 SGV-VGPVHGQPPPHFRKGTPEVAGA 258
S + GP G PPP TP A A
Sbjct: 279 SDLHPGPPAGSPPPLTLPPTPSPATA 304
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 48.1 bits (113), Expect = 7e-06
Identities = 51/163 (31%), Positives = 59/163 (36%), Gaps = 15/163 (9%)
Query: 82 QPSSSGSSSSRGGGAPVARPEPGRAASPG-SMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
+P G +SS G PGR PG +PGPP PP + P +G L
Sbjct: 919 EPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPP----GREGPPGRTGQKGSLG 974
Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
E P APG ARG +G AG+P A P PG P PAG
Sbjct: 975 EAGAPGHKGSKGAPGPAGARGESG-----LAGAPGPAGPPGPPGPPGPPGPGLPAGFDDM 1029
Query: 201 PGGAGCCPRVCGPAAG-----CLPLCASHPVLAHLPRQSGVVG 238
G G A G LP P + LP G VG
Sbjct: 1030 EGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVG 1072
Score = 44.7 bits (104), Expect = 8e-05
Identities = 40/121 (33%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 87 GSSSSRG-GGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWP 145
G RG G R EPG GS +PGPP PP P S P P P
Sbjct: 1325 GEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP 1384
Query: 146 LQLLLLLAPGRGCARGRAGEGRAQCAGSPS-TAPRPRTCSSPGRATPHRPAGQPSHPGGA 204
PG G + G G PS P +T S PG P P G P PG
Sbjct: 1385 QG-----PPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPG---PPGPPGPPGPPGTM 1436
Query: 205 G 205
G
Sbjct: 1437 G 1437
Score = 41.2 bits (95), Expect = 0.001
Identities = 56/202 (27%), Positives = 69/202 (34%), Gaps = 36/202 (17%)
Query: 59 MALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPA 118
+AL ++ P+E +R PSS G+ ++ G P P P P + + GP
Sbjct: 152 LALAGPSSTPQENGTTLWPSRGI-PSSPGAHTTEAGTLPAPTPSPPSLGRPWAPLTGPSV 210
Query: 119 PPPS----------------GDQQPAPSAGSGSTADLPEWPWPLQLLLLLAP-GRGCARG 161
PPPS G Q S G A P + L P G
Sbjct: 211 PPPSSGRASLSSLLGGAPPWGSLQDPDSQGLSPAAAAPSQQLQRPDVRLRTPLLHPLVMG 270
Query: 162 RAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQ-PSH------PGGA------GCCP 208
G+ A A S P S T R +G SH PG A G P
Sbjct: 271 SLGKHAAPSAFSSGL---PGALSQVAVTTLTRDSGAWVSHVANSVGPGLANNSALLGADP 327
Query: 209 RVCGPAAGCLPLCASHPVLAHL 230
PA CLPL S PV HL
Sbjct: 328 E--APAGRCLPLPPSLPVCGHL 347
Score = 40.8 bits (94), Expect = 0.001
Identities = 52/176 (29%), Positives = 61/176 (34%), Gaps = 27/176 (15%)
Query: 84 SSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWP 143
+S S S G + R E G A + P PAPPP P AG ST D
Sbjct: 662 ASGDSGSGLGDARELLREETGAA-----LKPRLPAPPP---VTTPPLAGGSSTEDSRSEE 713
Query: 144 WPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSP-GRATPHRPAGQPSHPG 202
Q + A G GS S + + +P GR GQ PG
Sbjct: 714 VEEQTTV------------ASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPG 761
Query: 203 GAGCCPRVCGPAAGCLP-----LCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
G R P + CLP C P+ P V GP G P P R GTP
Sbjct: 762 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGP-QGPPGPPGRDGTP 816
Score = 36.6 bits (83), Expect = 0.022
Identities = 63/216 (29%), Positives = 76/216 (35%), Gaps = 42/216 (19%)
Query: 79 RSPQPSSSGSSSSRG----GGAP---VARPEPGRAASPG-SMVPGPPAPP-PSGDQQPA- 128
R+ Q S G + + G GAP AR E G A +PG + PGPP PP P G PA
Sbjct: 966 RTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAG 1025
Query: 129 ---------PSAGSGSTADLPEWPWPLQLLL--LLAPGRGCARGRAG------------- 164
P + +AD P+ P L L PG A+G G
Sbjct: 1026 FDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGR 1085
Query: 165 EGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCL--PLCA 222
EG A G PG+ +P G P PG G V L P
Sbjct: 1086 EGIAGPQGPKGDRGSRGEKGDPGKDGVGQP-GLPGPPGPPGPVVYVSEQDGSVLSVPGPE 1144
Query: 223 SHPVLAHLPRQSGVVGPV-----HGQPPPHFRKGTP 253
P A P +G G + G P P KG P
Sbjct: 1145 GRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEP 1180
Score = 33.1 bits (74), Expect = 0.25
Identities = 49/182 (26%), Positives = 60/182 (32%), Gaps = 42/182 (23%)
Query: 95 GAPVARPEPGRAASPGSM-------VPGPPAPPP----SGDQQPAPSAGS-GSTAD---- 138
G P + +PG PG+ VPG P P +G Q P GS G D
Sbjct: 1051 GLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKD 1110
Query: 139 ------LPEWPWPLQLLLLLAPGRGCARGRAG-EGRAQCAGSPSTAPRPRTCSSPGRATP 191
LP P P ++ ++ G G EGR AG P A S G
Sbjct: 1111 GVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGS 1170
Query: 192 HRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGP--VHGQPPPHFR 249
P G+ PG + P G L P Q G G G P P+ R
Sbjct: 1171 PGPKGEKGEPGS------IFSPDGGALG-----------PAQKGAKGEPGFRGPPGPYGR 1213
Query: 250 KG 251
G
Sbjct: 1214 PG 1215
Score = 32.7 bits (73), Expect = 0.32
Identities = 41/168 (24%), Positives = 51/168 (30%), Gaps = 39/168 (23%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSM--VPGPPAPP----- 120
P + E R +P +G +G EPG A+ M +PGPP PP
Sbjct: 1214 PGYKGEIGFPGRPGRPGMNGLKGEKG--------EPGDASLGFGMRGMPGPPGPPGPPGP 1265
Query: 121 ----------------------PSGDQQPAPSAGSGSTADL-PEWPWPLQLLLLLAPGRG 157
P P P G P +P L L A +G
Sbjct: 1266 PGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKG 1325
Query: 158 CARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAG 205
R G+ G P + S PG P P G P PG G
Sbjct: 1326 EKGDRGDAGQKGERGEPGGGGFFGS-SLPGPPGPPGPRGYPGIPGPKG 1372
Score = 29.6 bits (65), Expect = 2.7
Identities = 41/150 (27%), Positives = 49/150 (32%), Gaps = 27/150 (18%)
Query: 114 PGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGS 173
PGPP PP P +++D+P L PGR EG G
Sbjct: 905 PGPPGPPGVPGLPGEPGRFGVNSSDVPG-----PAGLPGVPGR--------EGPPGFPGL 951
Query: 174 PSTAPRPRTCSSPGRATPH---RPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHL 230
P P PGR AG P H G G GPA LA
Sbjct: 952 PGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG----APGPAG-----ARGESGLAGA 1002
Query: 231 PRQSGVVGP--VHGQPPPHFRKGTPEVAGA 258
P +G GP G P P G ++ G+
Sbjct: 1003 PGPAGPPGPPGPPGPPGPGLPAGFDDMEGS 1032
Score = 28.1 bits (61), Expect = 7.9
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 83 PSSSGSSSSRGGGAPVARPEPGRAASPGSM---VPGPPAPPPSGDQQPAPSAGSGSTADL 139
P G +G P P P P VPGPP PP P P G+++ +
Sbjct: 1387 PPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPP----GPPGPPGTMGASSGV 1442
Query: 140 PEW 142
W
Sbjct: 1443 RLW 1445
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 48.1 bits (113), Expect = 7e-06
Identities = 51/163 (31%), Positives = 59/163 (36%), Gaps = 15/163 (9%)
Query: 82 QPSSSGSSSSRGGGAPVARPEPGRAASPG-SMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
+P G +SS G PGR PG +PGPP PP + P +G L
Sbjct: 504 EPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPP----GREGPPGRTGQKGSLG 559
Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
E P APG ARG +G AG+P A P PG P PAG
Sbjct: 560 EAGAPGHKGSKGAPGPAGARGESG-----LAGAPGPAGPPGPPGPPGPPGPGLPAGFDDM 614
Query: 201 PGGAGCCPRVCGPAAG-----CLPLCASHPVLAHLPRQSGVVG 238
G G A G LP P + LP G VG
Sbjct: 615 EGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVG 657
Score = 44.7 bits (104), Expect = 8e-05
Identities = 40/121 (33%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 87 GSSSSRG-GGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWP 145
G RG G R EPG GS +PGPP PP P S P P P
Sbjct: 910 GEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP 969
Query: 146 LQLLLLLAPGRGCARGRAGEGRAQCAGSPS-TAPRPRTCSSPGRATPHRPAGQPSHPGGA 204
PG G + G G PS P +T S PG P P G P PG
Sbjct: 970 QG-----PPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPG---PPGPPGPPGPPGTM 1021
Query: 205 G 205
G
Sbjct: 1022 G 1022
Score = 40.8 bits (94), Expect = 0.001
Identities = 52/176 (29%), Positives = 61/176 (34%), Gaps = 27/176 (15%)
Query: 84 SSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWP 143
+S S S G + R E G A + P PAPPP P AG ST D
Sbjct: 247 ASGDSGSGLGDARELLREETGAA-----LKPRLPAPPP---VTTPPLAGGSSTEDSRSEE 298
Query: 144 WPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSP-GRATPHRPAGQPSHPG 202
Q + A G GS S + + +P GR GQ PG
Sbjct: 299 VEEQTTV------------ASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPG 346
Query: 203 GAGCCPRVCGPAAGCLP-----LCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
G R P + CLP C P+ P V GP G P P R GTP
Sbjct: 347 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGP-QGPPGPPGRDGTP 401
Score = 36.6 bits (83), Expect = 0.022
Identities = 63/216 (29%), Positives = 76/216 (35%), Gaps = 42/216 (19%)
Query: 79 RSPQPSSSGSSSSRG----GGAP---VARPEPGRAASPG-SMVPGPPAPP-PSGDQQPA- 128
R+ Q S G + + G GAP AR E G A +PG + PGPP PP P G PA
Sbjct: 551 RTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAG 610
Query: 129 ---------PSAGSGSTADLPEWPWPLQLLL--LLAPGRGCARGRAG------------- 164
P + +AD P+ P L L PG A+G G
Sbjct: 611 FDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGR 670
Query: 165 EGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCL--PLCA 222
EG A G PG+ +P G P PG G V L P
Sbjct: 671 EGIAGPQGPKGDRGSRGEKGDPGKDGVGQP-GLPGPPGPPGPVVYVSEQDGSVLSVPGPE 729
Query: 223 SHPVLAHLPRQSGVVGPV-----HGQPPPHFRKGTP 253
P A P +G G + G P P KG P
Sbjct: 730 GRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEP 765
Score = 33.1 bits (74), Expect = 0.25
Identities = 49/182 (26%), Positives = 60/182 (32%), Gaps = 42/182 (23%)
Query: 95 GAPVARPEPGRAASPGSM-------VPGPPAPPP----SGDQQPAPSAGS-GSTAD---- 138
G P + +PG PG+ VPG P P +G Q P GS G D
Sbjct: 636 GLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKD 695
Query: 139 ------LPEWPWPLQLLLLLAPGRGCARGRAG-EGRAQCAGSPSTAPRPRTCSSPGRATP 191
LP P P ++ ++ G G EGR AG P A S G
Sbjct: 696 GVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGS 755
Query: 192 HRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGP--VHGQPPPHFR 249
P G+ PG + P G L P Q G G G P P+ R
Sbjct: 756 PGPKGEKGEPGS------IFSPDGGALG-----------PAQKGAKGEPGFRGPPGPYGR 798
Query: 250 KG 251
G
Sbjct: 799 PG 800
Score = 32.7 bits (73), Expect = 0.32
Identities = 41/168 (24%), Positives = 51/168 (30%), Gaps = 39/168 (23%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSM--VPGPPAPP----- 120
P + E R +P +G +G EPG A+ M +PGPP PP
Sbjct: 799 PGYKGEIGFPGRPGRPGMNGLKGEKG--------EPGDASLGFGMRGMPGPPGPPGPPGP 850
Query: 121 ----------------------PSGDQQPAPSAGSGSTADL-PEWPWPLQLLLLLAPGRG 157
P P P G P +P L L A +G
Sbjct: 851 PGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKG 910
Query: 158 CARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAG 205
R G+ G P + S PG P P G P PG G
Sbjct: 911 EKGDRGDAGQKGERGEPGGGGFFGS-SLPGPPGPPGPRGYPGIPGPKG 957
Score = 29.6 bits (65), Expect = 2.7
Identities = 41/150 (27%), Positives = 49/150 (32%), Gaps = 27/150 (18%)
Query: 114 PGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGS 173
PGPP PP P +++D+P L PGR EG G
Sbjct: 490 PGPPGPPGVPGLPGEPGRFGVNSSDVPG-----PAGLPGVPGR--------EGPPGFPGL 536
Query: 174 PSTAPRPRTCSSPGRATPH---RPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHL 230
P P PGR AG P H G G GPA LA
Sbjct: 537 PGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG----APGPAG-----ARGESGLAGA 587
Query: 231 PRQSGVVGP--VHGQPPPHFRKGTPEVAGA 258
P +G GP G P P G ++ G+
Sbjct: 588 PGPAGPPGPPGPPGPPGPGLPAGFDDMEGS 617
Score = 28.1 bits (61), Expect = 7.9
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 83 PSSSGSSSSRGGGAPVARPEPGRAASPGSM---VPGPPAPPPSGDQQPAPSAGSGSTADL 139
P G +G P P P P VPGPP PP P P G+++ +
Sbjct: 972 PPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPP----GPPGPPGTMGASSGV 1027
Query: 140 PEW 142
W
Sbjct: 1028 RLW 1030
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 48.1 bits (113), Expect = 7e-06
Identities = 51/163 (31%), Positives = 59/163 (36%), Gaps = 15/163 (9%)
Query: 82 QPSSSGSSSSRGGGAPVARPEPGRAASPG-SMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
+P G +SS G PGR PG +PGPP PP + P +G L
Sbjct: 684 EPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPP----GREGPPGRTGQKGSLG 739
Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
E P APG ARG +G AG+P A P PG P PAG
Sbjct: 740 EAGAPGHKGSKGAPGPAGARGESG-----LAGAPGPAGPPGPPGPPGPPGPGLPAGFDDM 794
Query: 201 PGGAGCCPRVCGPAAG-----CLPLCASHPVLAHLPRQSGVVG 238
G G A G LP P + LP G VG
Sbjct: 795 EGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVG 837
Score = 44.7 bits (104), Expect = 8e-05
Identities = 40/121 (33%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 87 GSSSSRG-GGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWP 145
G RG G R EPG GS +PGPP PP P S P P P
Sbjct: 1090 GEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP 1149
Query: 146 LQLLLLLAPGRGCARGRAGEGRAQCAGSPS-TAPRPRTCSSPGRATPHRPAGQPSHPGGA 204
PG G + G G PS P +T S PG P P G P PG
Sbjct: 1150 QG-----PPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPG---PPGPPGPPGPPGTM 1201
Query: 205 G 205
G
Sbjct: 1202 G 1202
Score = 40.8 bits (94), Expect = 0.001
Identities = 52/176 (29%), Positives = 61/176 (34%), Gaps = 27/176 (15%)
Query: 84 SSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWP 143
+S S S G + R E G A + P PAPPP P AG ST D
Sbjct: 427 ASGDSGSGLGDARELLREETGAA-----LKPRLPAPPP---VTTPPLAGGSSTEDSRSEE 478
Query: 144 WPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSP-GRATPHRPAGQPSHPG 202
Q + A G GS S + + +P GR GQ PG
Sbjct: 479 VEEQTTV------------ASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPG 526
Query: 203 GAGCCPRVCGPAAGCLP-----LCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
G R P + CLP C P+ P V GP G P P R GTP
Sbjct: 527 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGP-QGPPGPPGRDGTP 581
Score = 40.0 bits (92), Expect = 0.002
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 59 MALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPA 118
+AL ++ P+E +R PSS G+ ++ G P P P P + + GP
Sbjct: 152 LALAGPSSTPQENGTTLWPSRGI-PSSPGAHTTEAGTLPAPTPSPPSLGRPWAPLTGPSV 210
Query: 119 PPPSGDQ 125
PPPS ++
Sbjct: 211 PPPSSER 217
Score = 36.6 bits (83), Expect = 0.022
Identities = 63/216 (29%), Positives = 76/216 (35%), Gaps = 42/216 (19%)
Query: 79 RSPQPSSSGSSSSRG----GGAP---VARPEPGRAASPG-SMVPGPPAPP-PSGDQQPA- 128
R+ Q S G + + G GAP AR E G A +PG + PGPP PP P G PA
Sbjct: 731 RTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAG 790
Query: 129 ---------PSAGSGSTADLPEWPWPLQLLL--LLAPGRGCARGRAG------------- 164
P + +AD P+ P L L PG A+G G
Sbjct: 791 FDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGR 850
Query: 165 EGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCL--PLCA 222
EG A G PG+ +P G P PG G V L P
Sbjct: 851 EGIAGPQGPKGDRGSRGEKGDPGKDGVGQP-GLPGPPGPPGPVVYVSEQDGSVLSVPGPE 909
Query: 223 SHPVLAHLPRQSGVVGPV-----HGQPPPHFRKGTP 253
P A P +G G + G P P KG P
Sbjct: 910 GRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEP 945
Score = 33.1 bits (74), Expect = 0.25
Identities = 49/182 (26%), Positives = 60/182 (32%), Gaps = 42/182 (23%)
Query: 95 GAPVARPEPGRAASPGSM-------VPGPPAPPP----SGDQQPAPSAGS-GSTAD---- 138
G P + +PG PG+ VPG P P +G Q P GS G D
Sbjct: 816 GLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKD 875
Query: 139 ------LPEWPWPLQLLLLLAPGRGCARGRAG-EGRAQCAGSPSTAPRPRTCSSPGRATP 191
LP P P ++ ++ G G EGR AG P A S G
Sbjct: 876 GVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGS 935
Query: 192 HRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGP--VHGQPPPHFR 249
P G+ PG + P G L P Q G G G P P+ R
Sbjct: 936 PGPKGEKGEPGS------IFSPDGGALG-----------PAQKGAKGEPGFRGPPGPYGR 978
Query: 250 KG 251
G
Sbjct: 979 PG 980
Score = 32.7 bits (73), Expect = 0.32
Identities = 41/168 (24%), Positives = 51/168 (30%), Gaps = 39/168 (23%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSM--VPGPPAPP----- 120
P + E R +P +G +G EPG A+ M +PGPP PP
Sbjct: 979 PGYKGEIGFPGRPGRPGMNGLKGEKG--------EPGDASLGFGMRGMPGPPGPPGPPGP 1030
Query: 121 ----------------------PSGDQQPAPSAGSGSTADL-PEWPWPLQLLLLLAPGRG 157
P P P G P +P L L A +G
Sbjct: 1031 PGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKG 1090
Query: 158 CARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAG 205
R G+ G P + S PG P P G P PG G
Sbjct: 1091 EKGDRGDAGQKGERGEPGGGGFFGS-SLPGPPGPPGPRGYPGIPGPKG 1137
Score = 29.6 bits (65), Expect = 2.7
Identities = 41/150 (27%), Positives = 49/150 (32%), Gaps = 27/150 (18%)
Query: 114 PGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGS 173
PGPP PP P +++D+P L PGR EG G
Sbjct: 670 PGPPGPPGVPGLPGEPGRFGVNSSDVPG-----PAGLPGVPGR--------EGPPGFPGL 716
Query: 174 PSTAPRPRTCSSPGRATPH---RPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHL 230
P P PGR AG P H G G GPA LA
Sbjct: 717 PGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG----APGPAG-----ARGESGLAGA 767
Query: 231 PRQSGVVGP--VHGQPPPHFRKGTPEVAGA 258
P +G GP G P P G ++ G+
Sbjct: 768 PGPAGPPGPPGPPGPPGPGLPAGFDDMEGS 797
Score = 28.1 bits (61), Expect = 7.9
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 83 PSSSGSSSSRGGGAPVARPEPGRAASPGSM---VPGPPAPPPSGDQQPAPSAGSGSTADL 139
P G +G P P P P VPGPP PP P P G+++ +
Sbjct: 1152 PPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPP----GPPGPPGTMGASSGV 1207
Query: 140 PEW 142
W
Sbjct: 1208 RLW 1210
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 48.1 bits (113), Expect = 7e-06
Identities = 68/222 (30%), Positives = 78/222 (35%), Gaps = 46/222 (20%)
Query: 63 SSAAAPEEEAEAAAATRSP----QPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPA 118
S+ A P + AA+ T P P + GG P AR PG P PA
Sbjct: 7 SAQACPCQVPRAASTTWVPCQICGPRERHGPRTPGGQLPGARRGPG---------PRRPA 57
Query: 119 PPPSGDQQPAPSAGS------GSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAG 172
P P+ +P + GS P P P L L P R R R G G
Sbjct: 58 PLPA---RPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWG 114
Query: 173 SPSTAPRPRTCSS----------PGRATPHRPAGQ--PSHPGGAG-------CCPRVCGP 213
SP APRP S PG A RP G SHPGG G P GP
Sbjct: 115 SPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGP 174
Query: 214 AA--GCLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
AA G P V A R + P+ + P GTP
Sbjct: 175 AAADGGRP---QRTVRAAETRGAAAAPPLTLEGPVQSHHGTP 213
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 47.8 bits (112), Expect = 1e-05
Identities = 47/140 (33%), Positives = 55/140 (39%), Gaps = 17/140 (12%)
Query: 91 SRGGGAPVARP--EPGRAASPGSMVPGPPAPP---PSGDQQPAPSAGSGSTADLPEWPWP 145
+RGGG RP PG +PG P PPAPP P PAP G G P+ P
Sbjct: 3 ARGGGG---RPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAP--PQHPPR 57
Query: 146 LQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTC--SSPGRATPHRPAGQPSHPGG 203
+ L A G RGR + C G P T T S G P P+ P G
Sbjct: 58 AEALPPEAADEGGPRGRLRSRDSSC-GRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEG 116
Query: 204 AGCCPRVC----GPAAGCLP 219
P+V G A+G P
Sbjct: 117 PARGPKVSFSCRGAASGPAP 136
Score = 36.6 bits (83), Expect = 0.022
Identities = 39/150 (26%), Positives = 50/150 (33%), Gaps = 26/150 (17%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQP 127
P E A A P P + P P PG PG P PP PP + P
Sbjct: 10 PGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPG----PG---PAPPQHPPRAEALP 62
Query: 128 APSAGSG----------STADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQC--AGSPS 175
+A G S+ P P + +G G G G QC AG
Sbjct: 63 PEAADEGGPRGRLRSRDSSCGRPGTPG------AASTAKGSPNGECGRGEPQCSPAGPEG 116
Query: 176 TAPRPR-TCSSPGRATPHRPAGQPSHPGGA 204
A P+ + S G A+ P P+ G+
Sbjct: 117 PARGPKVSFSCRGAASGPAPGPGPAEEAGS 146
Score = 35.8 bits (81), Expect = 0.038
Identities = 39/126 (30%), Positives = 49/126 (38%), Gaps = 20/126 (15%)
Query: 95 GAP--VARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLL 152
G+P V RP PG A + S P PPA PP P + + LP P L
Sbjct: 753 GSPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPR-APRTSPYGGLPAAPLAGPAL--- 808
Query: 153 APGRGCARGRAGEGRAQ-----CAGSPSTAPRPRTCSSPGRA-TPHRPAGQPS------- 199
P R +R +Q A P+ + RP + S+P TP A PS
Sbjct: 809 -PARRLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRRDSA 867
Query: 200 HPGGAG 205
PG AG
Sbjct: 868 SPGAAG 873
Score = 34.3 bits (77), Expect = 0.11
Identities = 39/145 (26%), Positives = 47/145 (32%), Gaps = 35/145 (24%)
Query: 116 PPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPS 175
PP PPP A + + + P+ PL G G + P
Sbjct: 716 PPPPPPQVTSAIATLQQAAAMSFCPQVARPLV-------------GPLALGSPRLVRRPP 762
Query: 176 TAPRPRTCSSPGRATPHRPAGQPSHP--------GGAGCCPRVCGPA-------AGCLPL 220
P P +SPG P P G P+ P GG P + GPA PL
Sbjct: 763 PGPAP-AAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAP-LAGPALPARRLSRASRPL 820
Query: 221 CASHPVLAHLPRQSGVVGPVHGQPP 245
AS P L H G GP P
Sbjct: 821 SASQPSLPH-----GAPGPAASTRP 840
Score = 28.9 bits (63), Expect = 4.6
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 26/103 (25%)
Query: 42 LSCRWLSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVAR- 100
L R LS AS +++S +L A P AA+TR P+SS S+ R G P AR
Sbjct: 808 LPARRLSRASRPLSASQPSLPHGAPGP------AASTR---PASS--STPRLGPTPAARA 856
Query: 101 --PEPGR--AASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADL 139
P P R +ASPG+ +G P SA S +++L
Sbjct: 857 AAPSPDRRDSASPGA----------AGGLDPQDSARSRLSSNL 889
>gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 47.8 bits (112), Expect = 1e-05
Identities = 50/154 (32%), Positives = 63/154 (40%), Gaps = 39/154 (25%)
Query: 80 SPQPSSSGSSSSRGGGAPVARPE----PGRAASPGSMVPGPPAPPPSGD-QQPAPSAGSG 134
+P+P+ S S + G G PVA + PG G+ PP P GD + P P+A
Sbjct: 86 TPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAA--- 142
Query: 135 STADLPEWPWPLQLLLLLAPGR-----GCARGRAGEGRAQCAG--SPSTAPR---PRTC- 183
Q+ L GR G GRAG+ +A A P+ AP+ P C
Sbjct: 143 ------------QISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCR 190
Query: 184 -SSPG--RATPHRPAGQPSHPGGAGCCPRVCGPA 214
PG RA PH P H G CP CG A
Sbjct: 191 QQPPGNSRARPHSP-----HLGTRARCPCGCGEA 219
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 47.8 bits (112), Expect = 1e-05
Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 27/160 (16%)
Query: 70 EEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAP 129
+E +A + + +++ ++++ A A+ P R + G VP +P P
Sbjct: 662 QERFSAEQEQRRRDAATAAAAAAAAAAATAKRPPRRPETEGVPVPERASPGP-------- 713
Query: 130 SAGSGSTADLPEWPWPLQLLLLLA--PGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSP- 186
P QL+L L P G A GRA A SP R + S P
Sbjct: 714 ---------------PTQLVLKLKERPSPGPAAGRAARAAAGGTASPGGGARRASASGPV 758
Query: 187 -GRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHP 225
GR+ P H +G C PA G L CA++P
Sbjct: 759 PGRSPPAPARQSVIHVQASGARDEACAPAVGALRPCATYP 798
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 47.4 bits (111), Expect = 1e-05
Identities = 55/185 (29%), Positives = 65/185 (35%), Gaps = 41/185 (22%)
Query: 59 MALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSM------ 112
+A + A AP A AA A SP P+ G + R AP+A P P AA P
Sbjct: 140 VAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRA--APLAAPPPAPAAPPAVAPPAGPR 197
Query: 113 -------------VPGPPAPP-PSGDQQP------APSAGSGSTADLPEWPWPLQLLLLL 152
+P PP PP P QQP P G A P L+ ++
Sbjct: 198 RAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREVVRY 257
Query: 153 APGRGCARGRAGEGRAQCAGSPSTAPRPR------------TCSSPGRATPHRPAGQPSH 200
G G A GR GR Q A R R PGRA P A +PS
Sbjct: 258 LGGSGGAGGRLTRGRVQGLLEEEAAARGRLERTRLGALALPRGDRPGRAPPAASA-RPSR 316
Query: 201 PGGAG 205
G
Sbjct: 317 SKRGG 321
Score = 45.4 bits (106), Expect = 5e-05
Identities = 42/133 (31%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Query: 72 AEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSA 131
A AAAA +P P+ + APVA P RA P + APP G QP P A
Sbjct: 118 APAAAAAAAPPPTPAPPPPP----APVAAAAPARA--PRAAAAAATAPPSPGPAQPGPRA 171
Query: 132 GSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATP 191
+ P P P + P A R A A P P P+ + P + P
Sbjct: 172 QRAAPLAAPP-PAPAAPPAVAPP----AGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQP 226
Query: 192 HRPAGQPSHPGGA 204
P QP GGA
Sbjct: 227 PPPQPQPPPEGGA 239
Score = 37.7 bits (86), Expect = 0.010
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 55 ASSSMALLSSAAAPEEEAEAAAA--TRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSM 112
A+++ A + A P A AAA R+P+ +++ +++ G P RAA +
Sbjct: 121 AAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAP 180
Query: 113 VPGPPAP----PPSGDQQPAPSAGSGSTADLPEWPWP 145
P P AP PP+G ++ P A + LP P P
Sbjct: 181 PPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQP 217
Score = 37.4 bits (85), Expect = 0.013
Identities = 45/166 (27%), Positives = 53/166 (31%), Gaps = 31/166 (18%)
Query: 82 QPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPS-AGSGSTADLP 140
QP G++ AP P AA+P PP P P PA + + + A P
Sbjct: 100 QPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAP 159
Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
P P Q PG RAQ A +P AP P + P A P P P
Sbjct: 160 PSPGPAQ------PG----------PRAQRA-APLAAPPPAPAAPPAVAPPAGPRRAPP- 201
Query: 201 PGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPVHGQPPP 246
PA P P Q P QPPP
Sbjct: 202 ------------PAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPP 235
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 47.0 bits (110), Expect = 2e-05
Identities = 47/175 (26%), Positives = 64/175 (36%), Gaps = 24/175 (13%)
Query: 83 PSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEW 142
P G + SR +P +P+ G G+ GPP PPP Q P P G + P+
Sbjct: 162 PPPQGDNKSRSSRSPPGKPQ-GPPPQGGNQPQGPP-PPPGKPQGPPPQGG-----NKPQG 214
Query: 143 PWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPG 202
P P PG+ G+ ++Q A SP P+ P ++P G P PG
Sbjct: 215 PPP--------PGKPQGPPPQGDNKSQSARSPPGKPQ-----GPPPQGGNQPQGPPPPPG 261
Query: 203 GAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTPEVAG 257
P+ P G P P P G + PP +G P G
Sbjct: 262 K----PQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGG 312
Score = 38.1 bits (87), Expect = 0.008
Identities = 51/207 (24%), Positives = 77/207 (37%), Gaps = 32/207 (15%)
Query: 58 SMALLSSAAAP-------EEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPG 110
S+ALL+ ++A +EE+ + A G + +G +P +P+ G G
Sbjct: 7 SVALLALSSAQNLNEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQ-GPPPQGG 65
Query: 111 SMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQC 170
+ GPP PPP Q P P G + P+ P P PG+ G+ +++
Sbjct: 66 NQPQGPP-PPPGKPQGPPPQGG-----NKPQGPPP--------PGKPQGPPPQGD-KSRS 110
Query: 171 AGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHL 230
SP P+ P ++P G P PG P+ P G P P
Sbjct: 111 PRSPPGKPQ-----GPPPQGGNQPQGPPPPPGK----PQGPPPQGGNKPQGPPPPGKPQG 161
Query: 231 PRQSGVVGPVHGQPPPHFRKGTPEVAG 257
P G + PP +G P G
Sbjct: 162 PPPQGDNKSRSSRSPPGKPQGPPPQGG 188
Score = 38.1 bits (87), Expect = 0.008
Identities = 48/200 (24%), Positives = 61/200 (30%), Gaps = 39/200 (19%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASP----GSMVPGPP------ 117
P + + ++RSP G G P PG+ P G+ GPP
Sbjct: 163 PPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 222
Query: 118 APPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTA 177
PPP GD + S + S P+ P P +G G +G G P
Sbjct: 223 GPPPQGDNK---SQSARSPPGKPQGP----------PPQG---GNQPQGPPPPPGKPQGP 266
Query: 178 PRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVV 237
P G P +P G P G R S P P G
Sbjct: 267 PPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSR-------------SPPGKPQGPPPQGGN 313
Query: 238 GPVHGQPPPHFRKGTPEVAG 257
P PPP +G P G
Sbjct: 314 QPQGPPPPPGKPQGPPPQGG 333
Score = 37.4 bits (85), Expect = 0.013
Identities = 37/130 (28%), Positives = 47/130 (36%), Gaps = 12/130 (9%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASP----GSMVPGPPAPPPSG 123
P + + ++RSP G G P PG+ P G+ GP PPP
Sbjct: 287 PPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP--PPPGK 344
Query: 124 DQQPAPSAGSGSTA-----DLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAP 178
Q P P GS S + P+ P P Q A G + +A AG P P
Sbjct: 345 PQGPPPQGGSKSRSARSPPGKPQGP-PQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPP 403
Query: 179 RPRTCSSPGR 188
RP P R
Sbjct: 404 RPPQGGRPSR 413
Score = 37.0 bits (84), Expect = 0.017
Identities = 37/144 (25%), Positives = 47/144 (32%), Gaps = 24/144 (16%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASP----GSMVPGPPAPPPSG 123
P + + + RSP G G P PG+ P G+ GP PPP
Sbjct: 225 PPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP--PPPGK 282
Query: 124 DQQPAPSAGSGSTAD-----LPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAP 178
Q P P GS S + P+ P P +G G +G G P P
Sbjct: 283 PQGPPPQGGSKSRSSRSPPGKPQGP----------PPQG---GNQPQGPPPPPGKPQGPP 329
Query: 179 RPRTCSSPGRATPHRPAGQPSHPG 202
G P +P G P G
Sbjct: 330 PQGGNKPQGPPPPGKPQGPPPQGG 353
Score = 36.6 bits (83), Expect = 0.022
Identities = 49/212 (23%), Positives = 62/212 (29%), Gaps = 40/212 (18%)
Query: 56 SSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASP----GS 111
S S+ + AP + SP G G P PG+ P G+
Sbjct: 28 SPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 87
Query: 112 MVPGPP------APPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGE 165
GPP PPP GD+ +P + G P+ P P +G G +
Sbjct: 88 KPQGPPPPGKPQGPPPQGDKSRSPRSPPGK----PQGP----------PPQG---GNQPQ 130
Query: 166 GRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHP 225
G G P P G P +P G P R S P
Sbjct: 131 GPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSR-------------SPP 177
Query: 226 VLAHLPRQSGVVGPVHGQPPPHFRKGTPEVAG 257
P G P PPP +G P G
Sbjct: 178 GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 209
Score = 28.1 bits (61), Expect = 7.9
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRG----GGAPVARPEPGRAASPGSMVP-GPPAPPPS 122
P + + + RSP G G G P A P + +P + P GPP PP
Sbjct: 349 PPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQG 408
Query: 123 GDQQPAP 129
G P
Sbjct: 409 GRPSRPP 415
>gi|169218002 PREDICTED: hypothetical protein [Homo sapiens]
Length = 218
Score = 46.6 bits (109), Expect = 2e-05
Identities = 49/154 (31%), Positives = 63/154 (40%), Gaps = 39/154 (25%)
Query: 80 SPQPSSSGSSSSRGGGAPVARPE----PGRAASPGSMVPGPPAPPPSGD-QQPAPSAGSG 134
+P+P+ + S + G G PVA + PG G+ PP P GD + P P+A
Sbjct: 59 TPEPARAPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAA--- 115
Query: 135 STADLPEWPWPLQLLLLLAPGR-----GCARGRAGEGRAQCAG--SPSTAPR---PRTC- 183
Q+ L GR G GRAG+ +A A P+ AP+ P C
Sbjct: 116 ------------QISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCR 163
Query: 184 -SSPG--RATPHRPAGQPSHPGGAGCCPRVCGPA 214
PG RA PH P H G CP CG A
Sbjct: 164 QQPPGNSRARPHSP-----HLGTRARCPCGCGEA 192
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 46.6 bits (109), Expect = 2e-05
Identities = 54/162 (33%), Positives = 65/162 (40%), Gaps = 37/162 (22%)
Query: 75 AAATRSPQPSSSGSSSSRGGGAPVARPE---PGRAA---SPGSMVPGPPAPPPSGDQQPA 128
A RS P + S G A PE PGR A SPG PGP P G P
Sbjct: 648 AQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPV---PGGLSVPT 704
Query: 129 P---SAGSGSTADLPEWPWPLQLLLLLAPGRGCARG-------RAGEGRAQCAGSPSTAP 178
P AG S ADL + +P++ +A GR RG R G R Q SP+ +P
Sbjct: 705 PCGRGAGDFSEADLADRAFPVRGAGPIA-GRRRRRGWTFAAALRKGAPREQPPASPAASP 763
Query: 179 RPRTCSSP-------------GRATPHRPAGQPSHPGGAGCC 207
C +P GRAT P P+ PG +G C
Sbjct: 764 ----CQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLC 801
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 46.6 bits (109), Expect = 2e-05
Identities = 54/162 (33%), Positives = 65/162 (40%), Gaps = 37/162 (22%)
Query: 75 AAATRSPQPSSSGSSSSRGGGAPVARPE---PGRAA---SPGSMVPGPPAPPPSGDQQPA 128
A RS P + S G A PE PGR A SPG PGP P G P
Sbjct: 316 AQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPV---PGGLSVPT 372
Query: 129 P---SAGSGSTADLPEWPWPLQLLLLLAPGRGCARG-------RAGEGRAQCAGSPSTAP 178
P AG S ADL + +P++ +A GR RG R G R Q SP+ +P
Sbjct: 373 PCGRGAGDFSEADLADRAFPVRGAGPIA-GRRRRRGWTFAAALRKGAPREQPPASPAASP 431
Query: 179 RPRTCSSP-------------GRATPHRPAGQPSHPGGAGCC 207
C +P GRAT P P+ PG +G C
Sbjct: 432 ----CQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLC 469
Score = 30.0 bits (66), Expect = 2.1
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 65 AAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSM--VPGPPAPPP 121
AAA + R+P G RGGG A P ASP +P PP PPP
Sbjct: 182 AAAGGASSRRRQRGRNPALIVRGPGPRRGGGLTSAPPGLPPLASPPPFWELPRPPPPPP 240
>gi|169163057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 46.6 bits (109), Expect = 2e-05
Identities = 49/154 (31%), Positives = 63/154 (40%), Gaps = 39/154 (25%)
Query: 80 SPQPSSSGSSSSRGGGAPVARPE----PGRAASPGSMVPGPPAPPPSGD-QQPAPSAGSG 134
+P+P+ + S + G G PVA + PG G+ PP P GD + P P+A
Sbjct: 86 TPEPARAPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAA--- 142
Query: 135 STADLPEWPWPLQLLLLLAPGR-----GCARGRAGEGRAQCAG--SPSTAPR---PRTC- 183
Q+ L GR G GRAG+ +A A P+ AP+ P C
Sbjct: 143 ------------QISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCR 190
Query: 184 -SSPG--RATPHRPAGQPSHPGGAGCCPRVCGPA 214
PG RA PH P H G CP CG A
Sbjct: 191 QQPPGNSRARPHSP-----HLGTRARCPCGCGEA 219
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 46.6 bits (109), Expect = 2e-05
Identities = 48/176 (27%), Positives = 59/176 (33%), Gaps = 23/176 (13%)
Query: 81 PQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
P P +G + GA P GRAA G P P+G P G S
Sbjct: 85 PPPKDTGIARVPLAGA-AGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ--- 140
Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
++ GRG A A AG+P+ P PGR TP P G+ +
Sbjct: 141 ---------VMTPQGRGTVAAAAVAATASIAGAPTQYP-------PGRGTPPPPVGRATP 184
Query: 201 PGGAGCCPRVCGPAAG---CLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
P G P P G LP P+ P + G PPP R P
Sbjct: 185 PPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240
Score = 30.4 bits (67), Expect = 1.6
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAA-SPGSMVPGPPAPPPSGDQQ 126
P+ AAA + S +G+ + G P GRA PG M P P PP G
Sbjct: 144 PQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPI 203
Query: 127 PAPSA 131
P A
Sbjct: 204 GLPPA 208
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 46.6 bits (109), Expect = 2e-05
Identities = 48/176 (27%), Positives = 59/176 (33%), Gaps = 23/176 (13%)
Query: 81 PQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
P P +G + GA P GRAA G P P+G P G S
Sbjct: 85 PPPKDTGIARVPLAGA-AGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ--- 140
Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
++ GRG A A AG+P+ P PGR TP P G+ +
Sbjct: 141 ---------VMTPQGRGTVAAAAVAATASIAGAPTQYP-------PGRGTPPPPVGRATP 184
Query: 201 PGGAGCCPRVCGPAAG---CLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
P G P P G LP P+ P + G PPP R P
Sbjct: 185 PPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240
Score = 30.4 bits (67), Expect = 1.6
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAA-SPGSMVPGPPAPPPSGDQQ 126
P+ AAA + S +G+ + G P GRA PG M P P PP G
Sbjct: 144 PQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPI 203
Query: 127 PAPSA 131
P A
Sbjct: 204 GLPPA 208
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 46.6 bits (109), Expect = 2e-05
Identities = 48/176 (27%), Positives = 59/176 (33%), Gaps = 23/176 (13%)
Query: 81 PQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
P P +G + GA P GRAA G P P+G P G S
Sbjct: 85 PPPKDTGIARVPLAGA-AGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ--- 140
Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
++ GRG A A AG+P+ P PGR TP P G+ +
Sbjct: 141 ---------VMTPQGRGTVAAAAVAATASIAGAPTQYP-------PGRGTPPPPVGRATP 184
Query: 201 PGGAGCCPRVCGPAAG---CLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
P G P P G LP P+ P + G PPP R P
Sbjct: 185 PPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240
Score = 30.4 bits (67), Expect = 1.6
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAA-SPGSMVPGPPAPPPSGDQQ 126
P+ AAA + S +G+ + G P GRA PG M P P PP G
Sbjct: 144 PQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPI 203
Query: 127 PAPSA 131
P A
Sbjct: 204 GLPPA 208
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 46.6 bits (109), Expect = 2e-05
Identities = 48/176 (27%), Positives = 59/176 (33%), Gaps = 23/176 (13%)
Query: 81 PQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
P P +G + GA P GRAA G P P+G P G S
Sbjct: 85 PPPKDTGIARVPLAGA-AGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ--- 140
Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
++ GRG A A AG+P+ P PGR TP P G+ +
Sbjct: 141 ---------VMTPQGRGTVAAAAVAATASIAGAPTQYP-------PGRGTPPPPVGRATP 184
Query: 201 PGGAGCCPRVCGPAAG---CLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
P G P P G LP P+ P + G PPP R P
Sbjct: 185 PPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240
Score = 30.4 bits (67), Expect = 1.6
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAA-SPGSMVPGPPAPPPSGDQQ 126
P+ AAA + S +G+ + G P GRA PG M P P PP G
Sbjct: 144 PQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPI 203
Query: 127 PAPSA 131
P A
Sbjct: 204 GLPPA 208
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 46.6 bits (109), Expect = 2e-05
Identities = 48/176 (27%), Positives = 59/176 (33%), Gaps = 23/176 (13%)
Query: 81 PQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
P P +G + GA P GRAA G P P+G P G S
Sbjct: 85 PPPKDTGIARVPLAGA-AGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ--- 140
Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
++ GRG A A AG+P+ P PGR TP P G+ +
Sbjct: 141 ---------VMTPQGRGTVAAAAVAATASIAGAPTQYP-------PGRGTPPPPVGRATP 184
Query: 201 PGGAGCCPRVCGPAAG---CLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
P G P P G LP P+ P + G PPP R P
Sbjct: 185 PPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240
Score = 30.4 bits (67), Expect = 1.6
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 68 PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAA-SPGSMVPGPPAPPPSGDQQ 126
P+ AAA + S +G+ + G P GRA PG M P P PP G
Sbjct: 144 PQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPI 203
Query: 127 PAPSA 131
P A
Sbjct: 204 GLPPA 208
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.128 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,092,771
Number of Sequences: 37866
Number of extensions: 1146417
Number of successful extensions: 21205
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 1847
Number of HSP's that attempted gapping in prelim test: 10112
Number of HSP's gapped (non-prelim): 8453
length of query: 258
length of database: 18,247,518
effective HSP length: 100
effective length of query: 158
effective length of database: 14,460,918
effective search space: 2284825044
effective search space used: 2284825044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.