Guide to the Human Genome
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Search of human proteins with 239746814

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
         (258 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ...   533   e-152
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ...   533   e-152
gi|163965366 nascent polypeptide-associated complex alpha subuni...    54   1e-07
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ...    53   3e-07
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ...    53   3e-07
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]            53   3e-07
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ...    52   4e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      50   1e-06
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ...    50   3e-06
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    49   3e-06
gi|33286446 opioid growth factor receptor [Homo sapiens]               48   7e-06
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]          48   7e-06
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    48   7e-06
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    48   7e-06
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    48   7e-06
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]         48   7e-06
gi|156071470 hyperpolarization activated cyclic nucleotide-gated...    48   1e-05
gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]            48   1e-05
gi|18702331 OTU domain containing 7A [Homo sapiens]                    48   1e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     47   1e-05
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]     47   2e-05
gi|169218002 PREDICTED: hypothetical protein [Homo sapiens]            47   2e-05
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ...    47   2e-05
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ...    47   2e-05
gi|169163057 PREDICTED: hypothetical protein [Homo sapiens]            47   2e-05
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ...    47   2e-05
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ...    47   2e-05
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ...    47   2e-05
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ...    47   2e-05
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s...    47   2e-05

>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
           sapiens]
          Length = 258

 Score =  533 bits (1374), Expect = e-152
 Identities = 258/258 (100%), Positives = 258/258 (100%)

Query: 1   MSPERIMASPVSCRKRTRRCLKSQMVRMVSVSSRMKVSRLTLSCRWLSSASFSVASSSMA 60
           MSPERIMASPVSCRKRTRRCLKSQMVRMVSVSSRMKVSRLTLSCRWLSSASFSVASSSMA
Sbjct: 1   MSPERIMASPVSCRKRTRRCLKSQMVRMVSVSSRMKVSRLTLSCRWLSSASFSVASSSMA 60

Query: 61  LLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPP 120
           LLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPP
Sbjct: 61  LLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPP 120

Query: 121 PSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRP 180
           PSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRP
Sbjct: 121 PSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRP 180

Query: 181 RTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPV 240
           RTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPV
Sbjct: 181 RTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPV 240

Query: 241 HGQPPPHFRKGTPEVAGA 258
           HGQPPPHFRKGTPEVAGA
Sbjct: 241 HGQPPPHFRKGTPEVAGA 258


>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
           sapiens]
          Length = 258

 Score =  533 bits (1374), Expect = e-152
 Identities = 258/258 (100%), Positives = 258/258 (100%)

Query: 1   MSPERIMASPVSCRKRTRRCLKSQMVRMVSVSSRMKVSRLTLSCRWLSSASFSVASSSMA 60
           MSPERIMASPVSCRKRTRRCLKSQMVRMVSVSSRMKVSRLTLSCRWLSSASFSVASSSMA
Sbjct: 1   MSPERIMASPVSCRKRTRRCLKSQMVRMVSVSSRMKVSRLTLSCRWLSSASFSVASSSMA 60

Query: 61  LLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPP 120
           LLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPP
Sbjct: 61  LLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPP 120

Query: 121 PSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRP 180
           PSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRP
Sbjct: 121 PSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRP 180

Query: 181 RTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPV 240
           RTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPV
Sbjct: 181 RTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPV 240

Query: 241 HGQPPPHFRKGTPEVAGA 258
           HGQPPPHFRKGTPEVAGA
Sbjct: 241 HGQPPPHFRKGTPEVAGA 258


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 64/215 (29%), Positives = 82/215 (38%), Gaps = 29/215 (13%)

Query: 51   SFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGA---PVARPEPGRAA 107
            + S+ SSS     +  AP+    + +   +P P ++   S +GG A   P   P P  AA
Sbjct: 910  ALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPP-AA 968

Query: 108  SPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGR 167
            +P S   GP  P P G   P P+A   S    P  P P          +G     A    
Sbjct: 969  TPPSPKGGPATPSPKGAPTP-PAATPPSPKGGPATPSP----------KGAPTPPAVTPP 1017

Query: 168  AQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH---PGGAGCCPRVCGPAAGCLPLCASH 224
            +   GSP+  P P+  S+P  ATP  P G P+    P GA   P      A  LP     
Sbjct: 1018 SP-KGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTP------AATLPSPKGG 1070

Query: 225  PVLAHLPRQSGVVGPVHGQPP-PHFRKGTPEVAGA 258
            P     P   G   P    PP P     TP   GA
Sbjct: 1071 PA---TPSLKGAPTPPAATPPSPKGGPATPSPKGA 1102



 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 49/160 (30%), Positives = 66/160 (41%), Gaps = 21/160 (13%)

Query: 63   SSAAAPEEEAEAAAATRSPQ-----PSSSGSSSSRGGGAPVARPEPGR-AASPGSMVPGP 116
            ++ AA     +   AT SP+     P+++  S   G   P  +  P   AA+P S   GP
Sbjct: 1196 TTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGP 1255

Query: 117  PAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPST 176
              PPP G   P P A +         P  L+  L   P +G A   A        G P+T
Sbjct: 1256 ATPPPKG--APTPPAAT---------PPSLKGGLATPPHKG-APNPAVVTPPSPKGGPAT 1303

Query: 177  APRPRTCSSPGRATPHRPAGQPS--HPGGAGCCPRVCGPA 214
            +P P+   +P  ATP  P G P    P GA   P V  P+
Sbjct: 1304 SP-PKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPS 1342



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 46/195 (23%), Positives = 61/195 (31%), Gaps = 32/195 (16%)

Query: 68   PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAP--PPSGDQ 125
            P+E     A  ++P  S + SS  +    P  +  P   +  G+  P    P  P  G  
Sbjct: 896  PKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPA 955

Query: 126  QPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSS 185
             P+P       A  P  P                            G P+T P P+   +
Sbjct: 956  TPSPKWAPTPPAATPPSP---------------------------KGGPAT-PSPKGAPT 987

Query: 186  PGRATPHRPAGQPSHPG--GAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPVHGQ 243
            P  ATP  P G P+ P   GA   P V  P+    P     P  A  P  +    P    
Sbjct: 988  PPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSP 1047

Query: 244  PPPHFRKGTPEVAGA 258
                  KG P    A
Sbjct: 1048 AATPLPKGAPTTPAA 1062



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 49/204 (24%), Positives = 66/204 (32%), Gaps = 10/204 (4%)

Query: 65   AAAPEEEAEAAAATRSPQ-----PSSSGSSSSRGGGAPVARPEPGR-AASPGSMVPGPPA 118
            AA P     + AAT  P+     P+++  S   G   P  +  P   AA+P S   GP  
Sbjct: 1037 AATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPAT 1096

Query: 119  PPPSGDQQP---APSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPS 175
            P P G   P    P +  G  A  P    P          +G       +G      +  
Sbjct: 1097 PSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATP 1156

Query: 176  TAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCG-PAAGCLPLCASHPVLAHLPRQS 234
             +P+    + P +  P  PA  P  P G    P   G P        +    LA    + 
Sbjct: 1157 PSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKG 1216

Query: 235  GVVGPVHGQPPPHFRKGTPEVAGA 258
                P    P P     TP   GA
Sbjct: 1217 APTTPAATPPSPKGGLATPSPKGA 1240



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 40/145 (27%), Positives = 48/145 (33%), Gaps = 38/145 (26%)

Query: 65   AAAPEEEAEAAAATRSPQPSSSGSSSS-RGGGAPVARPEPGRAASPGSMVPGPPAPPPSG 123
            A  P + A   A    P P    ++S  +G   P A   P    SPG+  P   AP P  
Sbjct: 1279 ATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPP-KGAPTPPA 1337

Query: 124  DQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTC 183
               P+P      T  LP                              A +PS+   P T 
Sbjct: 1338 VTPPSPK----GTPTLP------------------------------ATTPSSKGGPTTP 1363

Query: 184  SSPGRATPHRPAGQPSHPGGAGCCP 208
            SS    TP  PA  PSH GG    P
Sbjct: 1364 SSKEGPTP--PAATPSHKGGPAMTP 1386



 Score = 34.3 bits (77), Expect = 0.11
 Identities = 38/152 (25%), Positives = 50/152 (32%), Gaps = 20/152 (13%)

Query: 63   SSAAAPEEEAEAAAATRSPQPSSSGS------SSSRGGGAPVARPEPGRAASPGSMVPGP 116
            S    P + A    A   P P  + +      SS  G   P ++  P   A+  S   GP
Sbjct: 1323 SPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGP 1382

Query: 117  PAPPPS---GDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGS 173
               PPS   G   P+P     S A +P           L+P +  A     EG A  +  
Sbjct: 1383 AMTPPSPKRGPAIPSPKGDPTSPAVIP-----------LSPKKAPATPVTREGAATPSKG 1431

Query: 174  PSTAPRPRTCSSPGRATPHRPAGQPSHPGGAG 205
              T P     S         P G P+ P   G
Sbjct: 1432 DLTPPAVTPVSLKKAPATSAPKGGPATPSSKG 1463



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 57/220 (25%), Positives = 73/220 (33%), Gaps = 29/220 (13%)

Query: 55   ASSSMALLSSAAAPEEEAEAAAATRSPQ-----PSSSGSSSSRGGGAPVAR--PEPGRAA 107
            A+ S   L+  A      + A AT +P+     PSS G  +      P  +  P P + A
Sbjct: 1426 ATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVA 1485

Query: 108  SPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWP-------WPLQLLLLLAPGRGCAR 160
            +  S    P  P P G     P+    S  ++P  P        P   LL        A 
Sbjct: 1486 TSSSPKKAPATPAPMG-APTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAP 1544

Query: 161  GRAGEGRAQCAGSPSTAP-------RPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGP 213
              A    A    SP   P        P T SS   ++P  PA  PS   GA     +  P
Sbjct: 1545 KEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSP--PAVTPSTYKGAPSPKELLIP 1602

Query: 214  AAGCLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
             A   P     P    +   S   GP    P     KGTP
Sbjct: 1603 PAVTSPSPKEAPTPPAVTPPSPEKGPATPAP-----KGTP 1637



 Score = 29.3 bits (64), Expect = 3.6
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 14/89 (15%)

Query: 68   PEEEAEAAAATRSPQPSSSGSSSSRGGGAP--------VARPEPGRAASPGSMVP----- 114
            P+E     ++  +  P +   S+ +G  +P        V  P P  A +P ++ P     
Sbjct: 1567 PKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEK 1626

Query: 115  GPPAPPPSGDQQPAPSAGSGSTADLPEWP 143
            GP  P P G     P   S S  D P  P
Sbjct: 1627 GPATPAPKGTPTSPPVTPS-SLKDSPTSP 1654



 Score = 28.5 bits (62), Expect = 6.1
 Identities = 49/177 (27%), Positives = 60/177 (33%), Gaps = 49/177 (27%)

Query: 54   VASSSMALLSSAAAPEEEAEAAAAT------RSPQPSSSGSSSSRGGGAPVA----RPEP 103
            VA+SS    S   AP   A   A T       SP+   +  SS R   AP A    +  P
Sbjct: 1484 VATSS----SPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTP 1539

Query: 104  GRAAS------PGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPE---------WPWPLQL 148
               A       P   VP P   P     + AP+  S   A  P           P P +L
Sbjct: 1540 ATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKEL 1599

Query: 149  LLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSP----GRATPHRPAGQPSHP 201
            L+                 A  + SP  AP P   + P    G ATP  P G P+ P
Sbjct: 1600 LI---------------PPAVTSPSPKEAPTPPAVTPPSPEKGPATP-APKGTPTSP 1640


>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
           sapiens]
          Length = 384

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 51/179 (28%), Positives = 63/179 (35%), Gaps = 24/179 (13%)

Query: 47  LSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRA 106
           L   +FS  S++   +S A  P+     AA    P+  S    S  G       P P + 
Sbjct: 54  LERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQH 113

Query: 107 ASPGSMVPGPPAPPP---SGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRA 163
            S   + P  P P P   S    PAP+A   +    P            A   G   G  
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPG----------RAASGGSGPGSR 163

Query: 164 GEGRAQCAGSPSTA---PRPRTCSSPGRATPHRPAGQPSHPG-------GAGCCPRVCG 212
           G+G  Q    PS A   P P TC    RA P R A     PG       G+G   R CG
Sbjct: 164 GQGSDQVGARPSRAGGQPPPLTCRR-CRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG 221


>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
           sapiens]
          Length = 384

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 51/179 (28%), Positives = 63/179 (35%), Gaps = 24/179 (13%)

Query: 47  LSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRA 106
           L   +FS  S++   +S A  P+     AA    P+  S    S  G       P P + 
Sbjct: 54  LERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQH 113

Query: 107 ASPGSMVPGPPAPPP---SGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRA 163
            S   + P  P P P   S    PAP+A   +    P            A   G   G  
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPG----------RAASGGSGPGSR 163

Query: 164 GEGRAQCAGSPSTA---PRPRTCSSPGRATPHRPAGQPSHPG-------GAGCCPRVCG 212
           G+G  Q    PS A   P P TC    RA P R A     PG       G+G   R CG
Sbjct: 164 GQGSDQVGARPSRAGGQPPPLTCRR-CRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG 221


>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 51/179 (28%), Positives = 63/179 (35%), Gaps = 24/179 (13%)

Query: 47  LSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRA 106
           L   +FS  S++   +S A  P+     AA    P+  S    S  G       P P + 
Sbjct: 54  LERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQH 113

Query: 107 ASPGSMVPGPPAPPP---SGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRA 163
            S   + P  P P P   S    PAP+A   +    P            A   G   G  
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPG----------RAASGGSGPGSR 163

Query: 164 GEGRAQCAGSPSTA---PRPRTCSSPGRATPHRPAGQPSHPG-------GAGCCPRVCG 212
           G+G  Q    PS A   P P TC    RA P R A     PG       G+G   R CG
Sbjct: 164 GQGSDQVGARPSRAGGQPPPLTCRR-CRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG 221


>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
           subunit [Homo sapiens]
          Length = 551

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 62/198 (31%), Positives = 71/198 (35%), Gaps = 34/198 (17%)

Query: 71  EAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAAS------------PGSMVPGPPA 118
           E ++   T+S Q S  G +   GG +  A P+ GR               PG   PG P 
Sbjct: 168 EMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPP 227

Query: 119 PP-PSGDQQPAPSAGSGSTADLPEWPWPLQLL---LLLAPGRGCARGRAGEGRAQCAGSP 174
           PP P+G   P P  G       P  P P Q+L   L   P RG           Q  G P
Sbjct: 228 PPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQP 287

Query: 175 STAPRP--RTCSSPGRATPHRP----AGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLA 228
              P P       PG   P  P     G P  PG     PR  GP     PL  + P   
Sbjct: 288 PLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFP--PRPPGPLGP--PLTLAPP--P 341

Query: 229 HLPRQSGVVGPVHGQPPP 246
           HLP      GP  G PPP
Sbjct: 342 HLP------GPPPGAPPP 353


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 60/187 (32%), Positives = 66/187 (35%), Gaps = 35/187 (18%)

Query: 83  PSSSGSSSSRGGGAPV-ARPEPGRAASPGSMVPGPPAPPPSGDQQPAPS---AGSGSTAD 138
           P   G S   G   P  AR  PG    PG   P   A PP  D QP        +G+  D
Sbjct: 778 PGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGD 837

Query: 139 L-------PEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATP 191
                   P  P P  +  + APG   ARG AG   A   G P  A R       G A P
Sbjct: 838 AGPPGPAGPAGP-PGPIGNVGAPGAKGARGSAGPPGA--TGFPGAAGRVGPPGPSGNAGP 894

Query: 192 HRPAGQPSHPGGAGCCPR-VCGPAAGCLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRK 250
             P G     GG G  PR   GPA                  + G VGP  G P P   K
Sbjct: 895 PGPPGPAGKEGGKG--PRGETGPAG-----------------RPGEVGP-PGPPGPAGEK 934

Query: 251 GTPEVAG 257
           G+P   G
Sbjct: 935 GSPGADG 941



 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 61/203 (30%), Positives = 75/203 (36%), Gaps = 28/203 (13%)

Query: 68  PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPG-------SMVPGPPAPP 120
           P     A AA  +  P + G   ++G     A   PG A +PG       S   GP  PP
Sbjct: 373 PGPPGPAGAAGPAGNPGADGQPGAKG-----ANGAPGIAGAPGFPGARGPSGPQGPGGPP 427

Query: 121 -PSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAP-GRGCARGRAGE-GRAQCAGSPSTA 177
            P G+     + GS         P P+ +     P G    RG  GE G     G P   
Sbjct: 428 GPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGER 487

Query: 178 PRPRTCSSPGR---ATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQS 234
             P +   PG    A P  PAG+   PG AG  P+     AG        P  A LP   
Sbjct: 488 GGPGSRGFPGADGVAGPKGPAGERGSPGPAG--PKGSPGEAG-------RPGEAGLPGAK 538

Query: 235 GVVGPVHGQPPPHFRKGTPEVAG 257
           G+ G   G P P  + G P  AG
Sbjct: 539 GLTGS-PGSPGPDGKTGPPGPAG 560



 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 53/187 (28%), Positives = 71/187 (37%), Gaps = 14/187 (7%)

Query: 72  AEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGS--MVPGPPAPPPSGDQQPAP 129
           A+  A  + P         +   G+P     PG A  PG+  +   P +P P G   P  
Sbjct: 498 ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPG 557

Query: 130 SAGSGSTADLPEWPWPL-QLLLLLAPG-RGCA--RGRAGE-GRAQCAGSPSTAPRPRTCS 184
            AG       P  P    Q  ++  PG +G A   G+AGE G     G+   A +     
Sbjct: 558 PAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAG 617

Query: 185 SPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPVHGQP 244
           + G   P  PAG+    G AG       P    LP  A  P  A  P + GV G + G P
Sbjct: 618 AQGPPGPAGPAGERGEQGPAG------SPGFQGLPGPAGPPGEAGKPGEQGVPGDL-GAP 670

Query: 245 PPHFRKG 251
            P   +G
Sbjct: 671 GPSGARG 677



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 60/207 (28%), Positives = 75/207 (36%), Gaps = 39/207 (18%)

Query: 83  PSSSGSSSSRGGGAPVARPEPGRAASPGSM-VPGPPAPPPSGDQQPAPSAGSGSTADLPE 141
           P   G+S   G  AP ++ + G    PG + V GPP P  +G++    + G      LP 
Sbjct: 427 PGPKGNSGEPG--APGSKGDTGAKGEPGPVGVQGPPGP--AGEEGKRGARGEPGPTGLPG 482

Query: 142 WPW----PLQLLLLLAPGRGCARGRAGE----GRAQCAGSPSTAPRPRTCSSP------- 186
            P     P       A G    +G AGE    G A   GSP  A RP     P       
Sbjct: 483 PPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 542

Query: 187 --------GRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPL-----CASHPVLA---HL 230
                   G+  P  PAGQ   PG  G  P      AG +        A  P  A    +
Sbjct: 543 SPGSPGPDGKTGPPGPAGQDGRPGPPG--PPGARGQAGVMGFPGPKGAAGEPGKAGERGV 600

Query: 231 PRQSGVVGPVHGQPPPHFRKGTPEVAG 257
           P   G VGP  G+      +G P  AG
Sbjct: 601 PGPPGAVGPA-GKDGEAGAQGPPGPAG 626



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 50/177 (28%), Positives = 59/177 (33%), Gaps = 32/177 (18%)

Query: 83   PSSSGSSSSRGGGAPVARP-EPGRAASPGSM----VPG-------PPAPPPSGDQ-QPAP 129
            P  +G   S G   P   P  PG     G      +PG       P  P PSG+  +  P
Sbjct: 928  PGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGP 987

Query: 130  SAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAG-EGRAQCAGSPSTAPRPRTCSSPGR 188
            S  SG        P P+       PG     G +G EG     GSP     P      G 
Sbjct: 988  SGASGERGP----PGPMG-----PPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE 1038

Query: 189  ATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPVHGQPP 245
              P  P G P  PG     P   GPA        + P        +G VGPV  + P
Sbjct: 1039 TGPAGPPGAPGAPG----APGPVGPAGKSGDRGETGPA-----GPAGPVGPVGARGP 1086



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 59/223 (26%), Positives = 73/223 (32%), Gaps = 36/223 (16%)

Query: 65  AAAPEEEAEAAAATRSPQPSSSGSSSSRG----------------GGAPVARPEPGRAAS 108
           A AP ++ E+  +  +    + G+   RG                 G P A+ EPG A +
Sbjct: 775 AGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGA 834

Query: 109 PGSMVP----GPPAPP-PSGDQ-QPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGR 162
            G   P    GP  PP P G+   P      GS        +P     +  PG     G 
Sbjct: 835 KGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP 894

Query: 163 AG-------EGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAA 215
            G       EG     G    A RP     PG   P    G P   G AG  P   GP  
Sbjct: 895 PGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAG-APGTPGPQG 953

Query: 216 GCLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTPEVAGA 258
                 A    +  LP Q G  G   G P P    G    +GA
Sbjct: 954 -----IAGQRGVVGLPGQRGERG-FPGLPGPSGEPGKQGPSGA 990



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 59/205 (28%), Positives = 70/205 (34%), Gaps = 34/205 (16%)

Query: 82  QPSSSGSSSSRGG-GAPVARPEPGRAASPGSMVPGPPAPP-PSGDQQPAPSAG------- 132
           +P +SG    RG  G P    + G A  PG   PG   PP P G +    +AG       
Sbjct: 210 EPGASGPMGPRGPPGPPGKNGDDGEAGKPGR--PGERGPPGPQGARGLPGTAGLPGMKGH 267

Query: 133 ------SGSTADL-PEWPW--PLQLLLLLAPGRGCARGRAGE-GRAQCAGSPSTAPRPRT 182
                  G+  D  P  P   P       APG+   RG  GE GR    G          
Sbjct: 268 RGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGA 327

Query: 183 CSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAH----LPRQSGVVG 238
             + G   P  PAG P  PG  G      G A    P  +  P         P  +G  G
Sbjct: 328 TGAAGPPGPTGPAGPPGFPGAVG----AKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAG 383

Query: 239 P-----VHGQPPPHFRKGTPEVAGA 258
           P       GQP      G P +AGA
Sbjct: 384 PAGNPGADGQPGAKGANGAPGIAGA 408



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 52/187 (27%), Positives = 60/187 (32%), Gaps = 36/187 (19%)

Query: 83  PSSSGSSSSRGG-GAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPA-PSAGSGSTADLP 140
           P + G+    G  GAP ++  PG    PG        P P GD+  A P    GS     
Sbjct: 703 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGER-GAAGLPGPKGDRGDAGPKGADGS----- 756

Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
                        PG+   RG  G       G P  A  P      G + P  P G    
Sbjct: 757 -------------PGKDGVRGLTGP-----IGPPGPAGAPGDKGESGPSGPAGPTGARGA 798

Query: 201 PGGAGCCPRVCGPA-------AGCLPLCASHPVLAHLPRQSGVVGPV--HGQPPPHFRKG 251
           PG  G  P   GPA       A   P     P  A     +G  GP    G P P    G
Sbjct: 799 PGDRG-EPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVG 857

Query: 252 TPEVAGA 258
            P   GA
Sbjct: 858 APGAKGA 864



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 37/126 (29%), Positives = 42/126 (33%), Gaps = 5/126 (3%)

Query: 81  PQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
           P P  +   + + G A    P PG A   G      PA  P     P P+   G      
Sbjct: 601 PGPPGAVGPAGKDGEAGAQGP-PGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPG 659

Query: 141 EWPWPLQLLLLLAPGRGCARGRAG-EGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPS 199
           E   P  L    APG   ARG  G  G     G P  A       +PG       AG P 
Sbjct: 660 EQGVPGDLG---APGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPG 716

Query: 200 HPGGAG 205
            PG  G
Sbjct: 717 APGSQG 722



 Score = 36.6 bits (83), Expect = 0.022
 Identities = 55/202 (27%), Positives = 62/202 (30%), Gaps = 45/202 (22%)

Query: 87  GSSSSRGGGAPVARPE----PGRAASPGSMVPGPPAPP---------------------P 121
           G +  RG   P   P     PG+   PG   PGPP PP                      
Sbjct: 115 GDTGPRGPRGPAGPPGRDGIPGQPGLPGP--PGPPGPPGPPGLGGNFAPQLSYGYDEKST 172

Query: 122 SGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPR 181
            G   P P   SG    LP  P         APG    +G  GE     A  P     P 
Sbjct: 173 GGISVPGPMGPSGPRG-LPGPPG--------APGPQGFQGPPGEPGEPGASGPMGPRGPP 223

Query: 182 TCSSPGRATPHRPAGQPSHPGGAGCCPRVCG----PAAGCLPLCASHPVLAHLPRQSGVV 237
               PG+      AG+P  PG  G  P   G    P    LP    H   + L    G  
Sbjct: 224 --GPPGKNGDDGEAGKPGRPGERG-PPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDA 280

Query: 238 GPV--HGQPPPHFRKGTPEVAG 257
           GP    G+P      G P   G
Sbjct: 281 GPAGPKGEPGSPGENGAPGQMG 302



 Score = 35.0 bits (79), Expect = 0.065
 Identities = 35/96 (36%), Positives = 38/96 (39%), Gaps = 20/96 (20%)

Query: 111  SMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAG-EGRAQ 169
            S + GPP PP S  +Q  PS  SG     P  P          PG   A G+ G  G   
Sbjct: 1114 SGLQGPPGPPGSPGEQ-GPSGASGPAG--PRGP----------PGSAGAPGKDGLNGLPG 1160

Query: 170  CAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAG 205
              G P   PR RT    G A P  P G P  PG  G
Sbjct: 1161 PIGPPG--PRGRT----GDAGPVGPPGPPGPPGPPG 1190



 Score = 32.0 bits (71), Expect = 0.55
 Identities = 46/175 (26%), Positives = 57/175 (32%), Gaps = 17/175 (9%)

Query: 83   PSSSGSSSSRGG-GAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPE 141
            P  SG   + G  G+P     PG     G   P  P   P     P P   +G + D  E
Sbjct: 1009 PGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGE 1068

Query: 142  WPWPLQLLLLLAP--GRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPS 199
               P      + P   RG A  +   G     G              G   P  P G P 
Sbjct: 1069 -TGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPG 1127

Query: 200  HPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQ---SGVVGPVHGQPPPHFRKG 251
              G +G      GPA    P     P  A  P +   +G+ GP+ G P P  R G
Sbjct: 1128 EQGPSG----ASGPAGPRGP-----PGSAGAPGKDGLNGLPGPI-GPPGPRGRTG 1172



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 72   AEAAAATRSPQPSSS--GSSSSRGGGAPVARPEP-GRAASPGSM-VPGPPAPPPSGDQQP 127
            A   A  R P  S+   G     G   P+  P P GR    G +  PGPP PP      P
Sbjct: 1134 ASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPG----PP 1189

Query: 128  APSAGSGSTADLPEWP 143
             P +     + LP+ P
Sbjct: 1190 GPPSAGFDFSFLPQPP 1205


>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
           sapiens]
          Length = 209

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 17/162 (10%)

Query: 47  LSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRA 106
           L   +FS  S++   +S A  P+     AA    P+  S    S  G       P P + 
Sbjct: 54  LERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQH 113

Query: 107 ASPGSMVPGPPAPPP---SGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRA 163
            S   + P  P P P   S    PAP+A   +    P            A   G   G  
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPG----------RAASGGSGPGSR 163

Query: 164 GEGRAQCAGSPSTA---PRPRTCSSPGRATPHRPAGQPSHPG 202
           G+G  Q    PS A   P P TC    RA P R A     PG
Sbjct: 164 GQGSDQVGARPSRAGGQPPPLTCRR-CRAAPRRSARPFRRPG 204



 Score = 33.1 bits (74), Expect = 0.25
 Identities = 38/166 (22%), Positives = 52/166 (31%), Gaps = 33/166 (19%)

Query: 40  LTLSCRWLSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVA 99
           L+ + R  SS +  +  S  + L       E A     + +P P S    ++R    P  
Sbjct: 32  LSAAFRTCSSGTCRLTRSRKSRLERGTFSPESAAGTEVSGAPHPDSRTRPAARPPH-PRT 90

Query: 100 RPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCA 159
           R  PGR+ S  +    PP P           A  G                   P  GC+
Sbjct: 91  RSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPG-------------------PRPGCS 131

Query: 160 RGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAG 205
             RA             +P P    +  R  P R A   S PG  G
Sbjct: 132 SARA-------------SPAPAAPQAAARTAPGRAASGGSGPGSRG 164


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 60/207 (28%), Positives = 78/207 (37%), Gaps = 24/207 (11%)

Query: 54  VASSSMALLSSA--AAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGS 111
           V S S A  + A  AAP E A  AA    P+P  +G +   GGG    RP P     P  
Sbjct: 62  VVSGSPAGAAGAGPAAPAEGAPGAA----PEPPPAGRARPGGGGPQ--RPGPPSPRRP-- 113

Query: 112 MVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCA 171
           +VP  PA PP+   +P P   +GS A +P            A         A  G A+ A
Sbjct: 114 LVPAGPA-PPAAKLRPPPEGSAGSCAPVP-----------AAAAVAAGPEPAPAGPAKPA 161

Query: 172 GSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLP 231
           G  + A   R    PG      P   P  P G G    + G AA      A+ P ++ + 
Sbjct: 162 GPAALA--ARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVN 219

Query: 232 RQSGVVGPVHGQPPPHFRKGTPEVAGA 258
                + P+     P     TP   GA
Sbjct: 220 NGPAALLPLPKPAAPGTVIQTPPFVGA 246



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 41/159 (25%), Positives = 53/159 (33%), Gaps = 26/159 (16%)

Query: 72  AEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPP-----APPPSGDQQ 126
           A A  A  +P P ++ + ++     P   P P   A P     GPP      PPP+  Q 
Sbjct: 246 AAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQN 305

Query: 127 -------PAPSAGSGSTADLPEWPWPLQLLLLLAPG-------------RGCARGRAGEG 166
                  PAP+  +G  A +   P P       APG                A+  A  G
Sbjct: 306 GGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASG 365

Query: 167 RAQCAGSPSTAPRPR-TCSSPGRATPHRPAGQPSHPGGA 204
            A  A S    P  +    SP    P  P      P GA
Sbjct: 366 PASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGA 404



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 62/223 (27%), Positives = 76/223 (34%), Gaps = 49/223 (21%)

Query: 56  SSSMALLSS--AAAPEEEAE---AAAATRSPQPSSSGSSSSR----GGGAPVARPEPGRA 106
           + S ALL+S  AAAP         AA    P+P++ G+        G  AP A   P   
Sbjct: 199 NGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPP 258

Query: 107 ASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEG 166
           A+P    P    PPP     PAP+    + A  P  P         A     A       
Sbjct: 259 AAPAPAAPAAAPPPP----PPAPA----TLARPPGHP---------AGPPTAAPAVPPPA 301

Query: 167 RAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCP-------------RVCGP 213
            AQ  GS   AP P    +P    P   +GQP  PG A   P             +   P
Sbjct: 302 AAQNGGSAGAAPAP----APAAGGPAGVSGQPG-PGAAAAAPAPGVKAESPKRVVQAAPP 356

Query: 214 AAGCLPLCASHPVLAHL---PRQSGVVGPVHGQPPPHFRKGTP 253
           AA  L         A +   P   G +      PPP    GTP
Sbjct: 357 AAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPP--APGTP 397


>gi|33286446 opioid growth factor receptor [Homo sapiens]
          Length = 677

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 48/176 (27%), Positives = 66/176 (37%), Gaps = 23/176 (13%)

Query: 49  SASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGG--GAPVARPEPGRA 106
           SA+ +   +    L+ + AP    +A  +    +  + G +  + G  G+P   P P  A
Sbjct: 468 SAAVASGGAQTLALAGSPAPSGHPKAGHSENGVEEDTEGRTGPKEGTPGSPSETPGPSPA 527

Query: 107 ASPG-------SMVPGPPAPPPSGDQ-QPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGC 158
              G       S  PGP    P+GD+   +PS   G     P    P +     +P    
Sbjct: 528 GPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAE-----SPSETP 582

Query: 159 ARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPA 214
               AG  R + A SPS  P PR     G      PA  PS   G    PR  GPA
Sbjct: 583 GPSPAGPTRDEPAESPSETPGPRPAGPAG----DEPAESPSETPG----PRPAGPA 630



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 38/142 (26%), Positives = 50/142 (35%), Gaps = 18/142 (12%)

Query: 64  SAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSG 123
           S A P  +  A + + +P P  +G +      +P   P P  A   G      PA  PS 
Sbjct: 525 SPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGD----EPAESPSE 580

Query: 124 DQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTC 183
              P+P   +G T D P            +P        AG    + A SPS  P PR  
Sbjct: 581 TPGPSP---AGPTRDEP----------AESPSETPGPRPAGPAGDEPAESPSETPGPRPA 627

Query: 184 SSPGRATPHRPAGQPSHPGGAG 205
              G      P+  P  P  AG
Sbjct: 628 GPAGDEPAESPSETPG-PSPAG 648



 Score = 33.9 bits (76), Expect = 0.14
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 66  AAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPG-------SMVPGPPA 118
           A P  +  A + + +P PS +G +      +P   P P  A   G       S  PGP  
Sbjct: 567 AGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRP 626

Query: 119 PPPSGD-------QQPAPSAGSGSTADLP 140
             P+GD       + P PS  +G T D P
Sbjct: 627 AGPAGDEPAESPSETPGPSP-AGPTRDEP 654



 Score = 33.1 bits (74), Expect = 0.25
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 64  SAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPG-----PPA 118
           S A P  +  A + + +P P  +G +      +P   P P R A P    P       P 
Sbjct: 585 SPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGP-RPAGPAGDEPAESPSETPG 643

Query: 119 PPPSGDQQPAPSAGSGSTADLPE 141
           P P+G  +  P A +G  A+L +
Sbjct: 644 PSPAGPTRDEP-AKAGEAAELQD 665


>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
          Length = 1192

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 42/122 (34%), Positives = 50/122 (40%), Gaps = 20/122 (16%)

Query: 86  SGSSSSRGGGAPVA-RPEPGRAASPGSMVPG--------PPAPPPSGDQQPAPSAGSGST 136
           S SS+  GG  P A  P P   A P S  PG        PP PP SG   P P  G   T
Sbjct: 79  STSSAGTGGAEPPALSPAPASPARPVSPAPGRRLSLWAVPPGPPLSGGLSPDPKPGGAPT 138

Query: 137 ADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAG 196
           +         +  LL +P  G   G   EGRA      S++P P T S   +  P  PA 
Sbjct: 139 SS--------RRPLLSSPSWG---GPEPEGRAGGGIPGSSSPHPGTGSRRLKVAPPPPAP 187

Query: 197 QP 198
           +P
Sbjct: 188 KP 189



 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 20/133 (15%)

Query: 55  ASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGS--- 111
           A S ++   S   P  +   ++A      S++ ++++ GGG   A    G  A  G+   
Sbjct: 206 AGSRLSWPESEGKPRVKGSKSSAGTGASVSAAATAAAAGGGGSTASTSGGVGAGAGARGK 265

Query: 112 ---------------MVPGPPA-PPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPG 155
                          + PGPPA  PP     P PS  +  TA   + P P   + L  P 
Sbjct: 266 LSPRKGKSKTLDNSDLHPGPPAGSPPPLTLPPTPSPATAVTAASAQPPGPAPPITLEPPA 325

Query: 156 RGCARGRAGEGRA 168
            G  RGR G GRA
Sbjct: 326 PGLKRGREG-GRA 337



 Score = 36.2 bits (82), Expect = 0.029
 Identities = 49/206 (23%), Positives = 67/206 (32%), Gaps = 33/206 (16%)

Query: 62  LSSAAAPEEEAEAAAATRSPQPSSSGSS-------SSRGGGAP-VARPEPGRAASPGSMV 113
           LS   +P+ +    A T S +P  S  S          GGG P  + P PG  +    + 
Sbjct: 123 LSGGLSPDPKP-GGAPTSSRRPLLSSPSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVA 181

Query: 114 PGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGS 173
           P PPAP P      + +   G         WP                   EG+ +  GS
Sbjct: 182 PPPPAPKPCKTVTTSGAKAGGGKGAGSRLSWP-----------------ESEGKPRVKGS 224

Query: 174 PSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQ 233
            S+A    + S+   A      G  +   G        G  AG     +     +     
Sbjct: 225 KSSAGTGASVSAAATAAAAGGGGSTASTSGG------VGAGAGARGKLSPRKGKSKTLDN 278

Query: 234 SGV-VGPVHGQPPPHFRKGTPEVAGA 258
           S +  GP  G PPP     TP  A A
Sbjct: 279 SDLHPGPPAGSPPPLTLPPTPSPATA 304


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1751

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 51/163 (31%), Positives = 59/163 (36%), Gaps = 15/163 (9%)

Query: 82   QPSSSGSSSSRGGGAPVARPEPGRAASPG-SMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
            +P   G +SS   G       PGR   PG   +PGPP PP     +  P   +G    L 
Sbjct: 919  EPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPP----GREGPPGRTGQKGSLG 974

Query: 141  EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
            E   P       APG   ARG +G      AG+P  A  P     PG   P  PAG    
Sbjct: 975  EAGAPGHKGSKGAPGPAGARGESG-----LAGAPGPAGPPGPPGPPGPPGPGLPAGFDDM 1029

Query: 201  PGGAGCCPRVCGPAAG-----CLPLCASHPVLAHLPRQSGVVG 238
             G  G        A G      LP     P +  LP   G VG
Sbjct: 1030 EGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVG 1072



 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 40/121 (33%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 87   GSSSSRG-GGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWP 145
            G    RG  G    R EPG     GS +PGPP PP        P     S    P  P P
Sbjct: 1325 GEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP 1384

Query: 146  LQLLLLLAPGRGCARGRAGEGRAQCAGSPS-TAPRPRTCSSPGRATPHRPAGQPSHPGGA 204
                    PG G    +   G     G PS   P  +T S PG   P  P G P  PG  
Sbjct: 1385 QG-----PPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPG---PPGPPGPPGPPGTM 1436

Query: 205  G 205
            G
Sbjct: 1437 G 1437



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 56/202 (27%), Positives = 69/202 (34%), Gaps = 36/202 (17%)

Query: 59  MALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPA 118
           +AL   ++ P+E       +R   PSS G+ ++  G  P   P P     P + + GP  
Sbjct: 152 LALAGPSSTPQENGTTLWPSRGI-PSSPGAHTTEAGTLPAPTPSPPSLGRPWAPLTGPSV 210

Query: 119 PPPS----------------GDQQPAPSAGSGSTADLPEWPWPLQLLLLLAP-GRGCARG 161
           PPPS                G  Q   S G    A  P        + L  P       G
Sbjct: 211 PPPSSGRASLSSLLGGAPPWGSLQDPDSQGLSPAAAAPSQQLQRPDVRLRTPLLHPLVMG 270

Query: 162 RAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQ-PSH------PGGA------GCCP 208
             G+  A  A S      P   S     T  R +G   SH      PG A      G  P
Sbjct: 271 SLGKHAAPSAFSSGL---PGALSQVAVTTLTRDSGAWVSHVANSVGPGLANNSALLGADP 327

Query: 209 RVCGPAAGCLPLCASHPVLAHL 230
               PA  CLPL  S PV  HL
Sbjct: 328 E--APAGRCLPLPPSLPVCGHL 347



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 52/176 (29%), Positives = 61/176 (34%), Gaps = 27/176 (15%)

Query: 84  SSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWP 143
           +S  S S  G    + R E G A     + P  PAPPP       P AG  ST D     
Sbjct: 662 ASGDSGSGLGDARELLREETGAA-----LKPRLPAPPP---VTTPPLAGGSSTEDSRSEE 713

Query: 144 WPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSP-GRATPHRPAGQPSHPG 202
              Q  +            A  G     GS S +    +  +P GR       GQ   PG
Sbjct: 714 VEEQTTV------------ASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPG 761

Query: 203 GAGCCPRVCGPAAGCLP-----LCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
             G   R   P + CLP      C   P+    P    V GP  G P P  R GTP
Sbjct: 762 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGP-QGPPGPPGRDGTP 816



 Score = 36.6 bits (83), Expect = 0.022
 Identities = 63/216 (29%), Positives = 76/216 (35%), Gaps = 42/216 (19%)

Query: 79   RSPQPSSSGSSSSRG----GGAP---VARPEPGRAASPG-SMVPGPPAPP-PSGDQQPA- 128
            R+ Q  S G + + G     GAP    AR E G A +PG +  PGPP PP P G   PA 
Sbjct: 966  RTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAG 1025

Query: 129  ---------PSAGSGSTADLPEWPWPLQLLL--LLAPGRGCARGRAG------------- 164
                     P   +  +AD P+ P  L  L      PG   A+G  G             
Sbjct: 1026 FDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGR 1085

Query: 165  EGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCL--PLCA 222
            EG A   G             PG+    +P G P  PG  G    V       L  P   
Sbjct: 1086 EGIAGPQGPKGDRGSRGEKGDPGKDGVGQP-GLPGPPGPPGPVVYVSEQDGSVLSVPGPE 1144

Query: 223  SHPVLAHLPRQSGVVGPV-----HGQPPPHFRKGTP 253
              P  A  P  +G  G +      G P P   KG P
Sbjct: 1145 GRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEP 1180



 Score = 33.1 bits (74), Expect = 0.25
 Identities = 49/182 (26%), Positives = 60/182 (32%), Gaps = 42/182 (23%)

Query: 95   GAPVARPEPGRAASPGSM-------VPGPPAPPP----SGDQQPAPSAGS-GSTAD---- 138
            G P  + +PG    PG+        VPG P  P     +G Q P    GS G   D    
Sbjct: 1051 GLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKD 1110

Query: 139  ------LPEWPWPLQLLLLLAPGRGCARGRAG-EGRAQCAGSPSTAPRPRTCSSPGRATP 191
                  LP  P P   ++ ++   G      G EGR   AG P  A       S G    
Sbjct: 1111 GVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGS 1170

Query: 192  HRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGP--VHGQPPPHFR 249
              P G+   PG       +  P  G L            P Q G  G     G P P+ R
Sbjct: 1171 PGPKGEKGEPGS------IFSPDGGALG-----------PAQKGAKGEPGFRGPPGPYGR 1213

Query: 250  KG 251
             G
Sbjct: 1214 PG 1215



 Score = 32.7 bits (73), Expect = 0.32
 Identities = 41/168 (24%), Positives = 51/168 (30%), Gaps = 39/168 (23%)

Query: 68   PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSM--VPGPPAPP----- 120
            P  + E     R  +P  +G    +G        EPG A+    M  +PGPP PP     
Sbjct: 1214 PGYKGEIGFPGRPGRPGMNGLKGEKG--------EPGDASLGFGMRGMPGPPGPPGPPGP 1265

Query: 121  ----------------------PSGDQQPAPSAGSGSTADL-PEWPWPLQLLLLLAPGRG 157
                                  P     P P    G      P   +P   L L A  +G
Sbjct: 1266 PGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKG 1325

Query: 158  CARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAG 205
                R   G+    G P       + S PG   P  P G P  PG  G
Sbjct: 1326 EKGDRGDAGQKGERGEPGGGGFFGS-SLPGPPGPPGPRGYPGIPGPKG 1372



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 41/150 (27%), Positives = 49/150 (32%), Gaps = 27/150 (18%)

Query: 114  PGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGS 173
            PGPP PP        P     +++D+P         L   PGR        EG     G 
Sbjct: 905  PGPPGPPGVPGLPGEPGRFGVNSSDVPG-----PAGLPGVPGR--------EGPPGFPGL 951

Query: 174  PSTAPRPRTCSSPGRATPH---RPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHL 230
            P     P     PGR         AG P H G  G      GPA            LA  
Sbjct: 952  PGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG----APGPAG-----ARGESGLAGA 1002

Query: 231  PRQSGVVGP--VHGQPPPHFRKGTPEVAGA 258
            P  +G  GP    G P P    G  ++ G+
Sbjct: 1003 PGPAGPPGPPGPPGPPGPGLPAGFDDMEGS 1032



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 83   PSSSGSSSSRGGGAPVARPEPGRAASPGSM---VPGPPAPPPSGDQQPAPSAGSGSTADL 139
            P   G    +G   P   P P     P      VPGPP PP      P P    G+++ +
Sbjct: 1387 PPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPP----GPPGPPGTMGASSGV 1442

Query: 140  PEW 142
              W
Sbjct: 1443 RLW 1445


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 51/163 (31%), Positives = 59/163 (36%), Gaps = 15/163 (9%)

Query: 82  QPSSSGSSSSRGGGAPVARPEPGRAASPG-SMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
           +P   G +SS   G       PGR   PG   +PGPP PP     +  P   +G    L 
Sbjct: 504 EPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPP----GREGPPGRTGQKGSLG 559

Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
           E   P       APG   ARG +G      AG+P  A  P     PG   P  PAG    
Sbjct: 560 EAGAPGHKGSKGAPGPAGARGESG-----LAGAPGPAGPPGPPGPPGPPGPGLPAGFDDM 614

Query: 201 PGGAGCCPRVCGPAAG-----CLPLCASHPVLAHLPRQSGVVG 238
            G  G        A G      LP     P +  LP   G VG
Sbjct: 615 EGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVG 657



 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 40/121 (33%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 87   GSSSSRG-GGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWP 145
            G    RG  G    R EPG     GS +PGPP PP        P     S    P  P P
Sbjct: 910  GEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP 969

Query: 146  LQLLLLLAPGRGCARGRAGEGRAQCAGSPS-TAPRPRTCSSPGRATPHRPAGQPSHPGGA 204
                    PG G    +   G     G PS   P  +T S PG   P  P G P  PG  
Sbjct: 970  QG-----PPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPG---PPGPPGPPGPPGTM 1021

Query: 205  G 205
            G
Sbjct: 1022 G 1022



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 52/176 (29%), Positives = 61/176 (34%), Gaps = 27/176 (15%)

Query: 84  SSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWP 143
           +S  S S  G    + R E G A     + P  PAPPP       P AG  ST D     
Sbjct: 247 ASGDSGSGLGDARELLREETGAA-----LKPRLPAPPP---VTTPPLAGGSSTEDSRSEE 298

Query: 144 WPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSP-GRATPHRPAGQPSHPG 202
              Q  +            A  G     GS S +    +  +P GR       GQ   PG
Sbjct: 299 VEEQTTV------------ASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPG 346

Query: 203 GAGCCPRVCGPAAGCLP-----LCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
             G   R   P + CLP      C   P+    P    V GP  G P P  R GTP
Sbjct: 347 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGP-QGPPGPPGRDGTP 401



 Score = 36.6 bits (83), Expect = 0.022
 Identities = 63/216 (29%), Positives = 76/216 (35%), Gaps = 42/216 (19%)

Query: 79  RSPQPSSSGSSSSRG----GGAP---VARPEPGRAASPG-SMVPGPPAPP-PSGDQQPA- 128
           R+ Q  S G + + G     GAP    AR E G A +PG +  PGPP PP P G   PA 
Sbjct: 551 RTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAG 610

Query: 129 ---------PSAGSGSTADLPEWPWPLQLLL--LLAPGRGCARGRAG------------- 164
                    P   +  +AD P+ P  L  L      PG   A+G  G             
Sbjct: 611 FDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGR 670

Query: 165 EGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCL--PLCA 222
           EG A   G             PG+    +P G P  PG  G    V       L  P   
Sbjct: 671 EGIAGPQGPKGDRGSRGEKGDPGKDGVGQP-GLPGPPGPPGPVVYVSEQDGSVLSVPGPE 729

Query: 223 SHPVLAHLPRQSGVVGPV-----HGQPPPHFRKGTP 253
             P  A  P  +G  G +      G P P   KG P
Sbjct: 730 GRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEP 765



 Score = 33.1 bits (74), Expect = 0.25
 Identities = 49/182 (26%), Positives = 60/182 (32%), Gaps = 42/182 (23%)

Query: 95  GAPVARPEPGRAASPGSM-------VPGPPAPPP----SGDQQPAPSAGS-GSTAD---- 138
           G P  + +PG    PG+        VPG P  P     +G Q P    GS G   D    
Sbjct: 636 GLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKD 695

Query: 139 ------LPEWPWPLQLLLLLAPGRGCARGRAG-EGRAQCAGSPSTAPRPRTCSSPGRATP 191
                 LP  P P   ++ ++   G      G EGR   AG P  A       S G    
Sbjct: 696 GVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGS 755

Query: 192 HRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGP--VHGQPPPHFR 249
             P G+   PG       +  P  G L            P Q G  G     G P P+ R
Sbjct: 756 PGPKGEKGEPGS------IFSPDGGALG-----------PAQKGAKGEPGFRGPPGPYGR 798

Query: 250 KG 251
            G
Sbjct: 799 PG 800



 Score = 32.7 bits (73), Expect = 0.32
 Identities = 41/168 (24%), Positives = 51/168 (30%), Gaps = 39/168 (23%)

Query: 68  PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSM--VPGPPAPP----- 120
           P  + E     R  +P  +G    +G        EPG A+    M  +PGPP PP     
Sbjct: 799 PGYKGEIGFPGRPGRPGMNGLKGEKG--------EPGDASLGFGMRGMPGPPGPPGPPGP 850

Query: 121 ----------------------PSGDQQPAPSAGSGSTADL-PEWPWPLQLLLLLAPGRG 157
                                 P     P P    G      P   +P   L L A  +G
Sbjct: 851 PGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKG 910

Query: 158 CARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAG 205
               R   G+    G P       + S PG   P  P G P  PG  G
Sbjct: 911 EKGDRGDAGQKGERGEPGGGGFFGS-SLPGPPGPPGPRGYPGIPGPKG 957



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 41/150 (27%), Positives = 49/150 (32%), Gaps = 27/150 (18%)

Query: 114 PGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGS 173
           PGPP PP        P     +++D+P         L   PGR        EG     G 
Sbjct: 490 PGPPGPPGVPGLPGEPGRFGVNSSDVPG-----PAGLPGVPGR--------EGPPGFPGL 536

Query: 174 PSTAPRPRTCSSPGRATPH---RPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHL 230
           P     P     PGR         AG P H G  G      GPA            LA  
Sbjct: 537 PGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG----APGPAG-----ARGESGLAGA 587

Query: 231 PRQSGVVGP--VHGQPPPHFRKGTPEVAGA 258
           P  +G  GP    G P P    G  ++ G+
Sbjct: 588 PGPAGPPGPPGPPGPPGPGLPAGFDDMEGS 617



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 83   PSSSGSSSSRGGGAPVARPEPGRAASPGSM---VPGPPAPPPSGDQQPAPSAGSGSTADL 139
            P   G    +G   P   P P     P      VPGPP PP      P P    G+++ +
Sbjct: 972  PPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPP----GPPGPPGTMGASSGV 1027

Query: 140  PEW 142
              W
Sbjct: 1028 RLW 1030


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1516

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 51/163 (31%), Positives = 59/163 (36%), Gaps = 15/163 (9%)

Query: 82  QPSSSGSSSSRGGGAPVARPEPGRAASPG-SMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
           +P   G +SS   G       PGR   PG   +PGPP PP     +  P   +G    L 
Sbjct: 684 EPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPP----GREGPPGRTGQKGSLG 739

Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
           E   P       APG   ARG +G      AG+P  A  P     PG   P  PAG    
Sbjct: 740 EAGAPGHKGSKGAPGPAGARGESG-----LAGAPGPAGPPGPPGPPGPPGPGLPAGFDDM 794

Query: 201 PGGAGCCPRVCGPAAG-----CLPLCASHPVLAHLPRQSGVVG 238
            G  G        A G      LP     P +  LP   G VG
Sbjct: 795 EGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVG 837



 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 40/121 (33%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 87   GSSSSRG-GGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWP 145
            G    RG  G    R EPG     GS +PGPP PP        P     S    P  P P
Sbjct: 1090 GEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGP 1149

Query: 146  LQLLLLLAPGRGCARGRAGEGRAQCAGSPS-TAPRPRTCSSPGRATPHRPAGQPSHPGGA 204
                    PG G    +   G     G PS   P  +T S PG   P  P G P  PG  
Sbjct: 1150 QG-----PPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPG---PPGPPGPPGPPGTM 1201

Query: 205  G 205
            G
Sbjct: 1202 G 1202



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 52/176 (29%), Positives = 61/176 (34%), Gaps = 27/176 (15%)

Query: 84  SSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWP 143
           +S  S S  G    + R E G A     + P  PAPPP       P AG  ST D     
Sbjct: 427 ASGDSGSGLGDARELLREETGAA-----LKPRLPAPPP---VTTPPLAGGSSTEDSRSEE 478

Query: 144 WPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSP-GRATPHRPAGQPSHPG 202
              Q  +            A  G     GS S +    +  +P GR       GQ   PG
Sbjct: 479 VEEQTTV------------ASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPG 526

Query: 203 GAGCCPRVCGPAAGCLP-----LCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
             G   R   P + CLP      C   P+    P    V GP  G P P  R GTP
Sbjct: 527 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGP-QGPPGPPGRDGTP 581



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 59  MALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPA 118
           +AL   ++ P+E       +R   PSS G+ ++  G  P   P P     P + + GP  
Sbjct: 152 LALAGPSSTPQENGTTLWPSRGI-PSSPGAHTTEAGTLPAPTPSPPSLGRPWAPLTGPSV 210

Query: 119 PPPSGDQ 125
           PPPS ++
Sbjct: 211 PPPSSER 217



 Score = 36.6 bits (83), Expect = 0.022
 Identities = 63/216 (29%), Positives = 76/216 (35%), Gaps = 42/216 (19%)

Query: 79  RSPQPSSSGSSSSRG----GGAP---VARPEPGRAASPG-SMVPGPPAPP-PSGDQQPA- 128
           R+ Q  S G + + G     GAP    AR E G A +PG +  PGPP PP P G   PA 
Sbjct: 731 RTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAG 790

Query: 129 ---------PSAGSGSTADLPEWPWPLQLLL--LLAPGRGCARGRAG------------- 164
                    P   +  +AD P+ P  L  L      PG   A+G  G             
Sbjct: 791 FDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGR 850

Query: 165 EGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCL--PLCA 222
           EG A   G             PG+    +P G P  PG  G    V       L  P   
Sbjct: 851 EGIAGPQGPKGDRGSRGEKGDPGKDGVGQP-GLPGPPGPPGPVVYVSEQDGSVLSVPGPE 909

Query: 223 SHPVLAHLPRQSGVVGPV-----HGQPPPHFRKGTP 253
             P  A  P  +G  G +      G P P   KG P
Sbjct: 910 GRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEP 945



 Score = 33.1 bits (74), Expect = 0.25
 Identities = 49/182 (26%), Positives = 60/182 (32%), Gaps = 42/182 (23%)

Query: 95  GAPVARPEPGRAASPGSM-------VPGPPAPPP----SGDQQPAPSAGS-GSTAD---- 138
           G P  + +PG    PG+        VPG P  P     +G Q P    GS G   D    
Sbjct: 816 GLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKD 875

Query: 139 ------LPEWPWPLQLLLLLAPGRGCARGRAG-EGRAQCAGSPSTAPRPRTCSSPGRATP 191
                 LP  P P   ++ ++   G      G EGR   AG P  A       S G    
Sbjct: 876 GVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGS 935

Query: 192 HRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGP--VHGQPPPHFR 249
             P G+   PG       +  P  G L            P Q G  G     G P P+ R
Sbjct: 936 PGPKGEKGEPGS------IFSPDGGALG-----------PAQKGAKGEPGFRGPPGPYGR 978

Query: 250 KG 251
            G
Sbjct: 979 PG 980



 Score = 32.7 bits (73), Expect = 0.32
 Identities = 41/168 (24%), Positives = 51/168 (30%), Gaps = 39/168 (23%)

Query: 68   PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSM--VPGPPAPP----- 120
            P  + E     R  +P  +G    +G        EPG A+    M  +PGPP PP     
Sbjct: 979  PGYKGEIGFPGRPGRPGMNGLKGEKG--------EPGDASLGFGMRGMPGPPGPPGPPGP 1030

Query: 121  ----------------------PSGDQQPAPSAGSGSTADL-PEWPWPLQLLLLLAPGRG 157
                                  P     P P    G      P   +P   L L A  +G
Sbjct: 1031 PGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKG 1090

Query: 158  CARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAG 205
                R   G+    G P       + S PG   P  P G P  PG  G
Sbjct: 1091 EKGDRGDAGQKGERGEPGGGGFFGS-SLPGPPGPPGPRGYPGIPGPKG 1137



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 41/150 (27%), Positives = 49/150 (32%), Gaps = 27/150 (18%)

Query: 114 PGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGS 173
           PGPP PP        P     +++D+P         L   PGR        EG     G 
Sbjct: 670 PGPPGPPGVPGLPGEPGRFGVNSSDVPG-----PAGLPGVPGR--------EGPPGFPGL 716

Query: 174 PSTAPRPRTCSSPGRATPH---RPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHL 230
           P     P     PGR         AG P H G  G      GPA            LA  
Sbjct: 717 PGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG----APGPAG-----ARGESGLAGA 767

Query: 231 PRQSGVVGP--VHGQPPPHFRKGTPEVAGA 258
           P  +G  GP    G P P    G  ++ G+
Sbjct: 768 PGPAGPPGPPGPPGPPGPGLPAGFDDMEGS 797



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 83   PSSSGSSSSRGGGAPVARPEPGRAASPGSM---VPGPPAPPPSGDQQPAPSAGSGSTADL 139
            P   G    +G   P   P P     P      VPGPP PP      P P    G+++ +
Sbjct: 1152 PPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPP----GPPGPPGTMGASSGV 1207

Query: 140  PEW 142
              W
Sbjct: 1208 RLW 1210


>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
          Length = 261

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 68/222 (30%), Positives = 78/222 (35%), Gaps = 46/222 (20%)

Query: 63  SSAAAPEEEAEAAAATRSP----QPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPA 118
           S+ A P +   AA+ T  P     P       + GG  P AR  PG         P  PA
Sbjct: 7   SAQACPCQVPRAASTTWVPCQICGPRERHGPRTPGGQLPGARRGPG---------PRRPA 57

Query: 119 PPPSGDQQPAPSAGS------GSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAG 172
           P P+   +P  + GS            P  P P    L L P R   R R   G     G
Sbjct: 58  PLPA---RPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWG 114

Query: 173 SPSTAPRPRTCSS----------PGRATPHRPAGQ--PSHPGGAG-------CCPRVCGP 213
           SP  APRP    S          PG A   RP G    SHPGG G         P   GP
Sbjct: 115 SPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGP 174

Query: 214 AA--GCLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
           AA  G  P      V A   R +    P+  + P     GTP
Sbjct: 175 AAADGGRP---QRTVRAAETRGAAAAPPLTLEGPVQSHHGTP 213


>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 2 [Homo sapiens]
          Length = 889

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 47/140 (33%), Positives = 55/140 (39%), Gaps = 17/140 (12%)

Query: 91  SRGGGAPVARP--EPGRAASPGSMVPGPPAPP---PSGDQQPAPSAGSGSTADLPEWPWP 145
           +RGGG    RP   PG   +PG   P PPAPP   P     PAP  G G     P+ P  
Sbjct: 3   ARGGGG---RPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAP--PQHPPR 57

Query: 146 LQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTC--SSPGRATPHRPAGQPSHPGG 203
            + L   A   G  RGR     + C G P T     T   S  G      P   P+ P G
Sbjct: 58  AEALPPEAADEGGPRGRLRSRDSSC-GRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEG 116

Query: 204 AGCCPRVC----GPAAGCLP 219
               P+V     G A+G  P
Sbjct: 117 PARGPKVSFSCRGAASGPAP 136



 Score = 36.6 bits (83), Expect = 0.022
 Identities = 39/150 (26%), Positives = 50/150 (33%), Gaps = 26/150 (17%)

Query: 68  PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQP 127
           P E   A  A   P P        +    P   P PG    PG   P PP  PP  +  P
Sbjct: 10  PGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPG----PG---PAPPQHPPRAEALP 62

Query: 128 APSAGSG----------STADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQC--AGSPS 175
             +A  G          S+   P  P         +  +G   G  G G  QC  AG   
Sbjct: 63  PEAADEGGPRGRLRSRDSSCGRPGTPG------AASTAKGSPNGECGRGEPQCSPAGPEG 116

Query: 176 TAPRPR-TCSSPGRATPHRPAGQPSHPGGA 204
            A  P+ + S  G A+   P   P+   G+
Sbjct: 117 PARGPKVSFSCRGAASGPAPGPGPAEEAGS 146



 Score = 35.8 bits (81), Expect = 0.038
 Identities = 39/126 (30%), Positives = 49/126 (38%), Gaps = 20/126 (15%)

Query: 95  GAP--VARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLL 152
           G+P  V RP PG A +  S  P PPA PP     P  +  +     LP  P     L   
Sbjct: 753 GSPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPR-APRTSPYGGLPAAPLAGPAL--- 808

Query: 153 APGRGCARGRAGEGRAQ-----CAGSPSTAPRPRTCSSPGRA-TPHRPAGQPS------- 199
            P R  +R       +Q      A  P+ + RP + S+P    TP   A  PS       
Sbjct: 809 -PARRLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRRDSA 867

Query: 200 HPGGAG 205
            PG AG
Sbjct: 868 SPGAAG 873



 Score = 34.3 bits (77), Expect = 0.11
 Identities = 39/145 (26%), Positives = 47/145 (32%), Gaps = 35/145 (24%)

Query: 116 PPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPS 175
           PP PPP      A    + + +  P+   PL              G    G  +    P 
Sbjct: 716 PPPPPPQVTSAIATLQQAAAMSFCPQVARPLV-------------GPLALGSPRLVRRPP 762

Query: 176 TAPRPRTCSSPGRATPHRPAGQPSHP--------GGAGCCPRVCGPA-------AGCLPL 220
             P P   +SPG   P  P G P+ P        GG    P + GPA           PL
Sbjct: 763 PGPAP-AAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAP-LAGPALPARRLSRASRPL 820

Query: 221 CASHPVLAHLPRQSGVVGPVHGQPP 245
            AS P L H     G  GP     P
Sbjct: 821 SASQPSLPH-----GAPGPAASTRP 840



 Score = 28.9 bits (63), Expect = 4.6
 Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 26/103 (25%)

Query: 42  LSCRWLSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVAR- 100
           L  R LS AS  +++S  +L   A  P      AA+TR   P+SS  S+ R G  P AR 
Sbjct: 808 LPARRLSRASRPLSASQPSLPHGAPGP------AASTR---PASS--STPRLGPTPAARA 856

Query: 101 --PEPGR--AASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADL 139
             P P R  +ASPG+          +G   P  SA S  +++L
Sbjct: 857 AAPSPDRRDSASPGA----------AGGLDPQDSARSRLSSNL 889


>gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 50/154 (32%), Positives = 63/154 (40%), Gaps = 39/154 (25%)

Query: 80  SPQPSSSGSSSSRGGGAPVARPE----PGRAASPGSMVPGPPAPPPSGD-QQPAPSAGSG 134
           +P+P+ S S +  G G PVA  +    PG     G+    PP  P  GD + P P+A   
Sbjct: 86  TPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAA--- 142

Query: 135 STADLPEWPWPLQLLLLLAPGR-----GCARGRAGEGRAQCAG--SPSTAPR---PRTC- 183
                       Q+ L    GR     G   GRAG+ +A  A    P+ AP+   P  C 
Sbjct: 143 ------------QISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCR 190

Query: 184 -SSPG--RATPHRPAGQPSHPGGAGCCPRVCGPA 214
              PG  RA PH P     H G    CP  CG A
Sbjct: 191 QQPPGNSRARPHSP-----HLGTRARCPCGCGEA 219


>gi|18702331 OTU domain containing 7A [Homo sapiens]
          Length = 926

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 27/160 (16%)

Query: 70  EEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAP 129
           +E  +A   +  + +++ ++++    A  A+  P R  + G  VP   +P P        
Sbjct: 662 QERFSAEQEQRRRDAATAAAAAAAAAAATAKRPPRRPETEGVPVPERASPGP-------- 713

Query: 130 SAGSGSTADLPEWPWPLQLLLLLA--PGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSP- 186
                          P QL+L L   P  G A GRA    A    SP    R  + S P 
Sbjct: 714 ---------------PTQLVLKLKERPSPGPAAGRAARAAAGGTASPGGGARRASASGPV 758

Query: 187 -GRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHP 225
            GR+ P        H   +G     C PA G L  CA++P
Sbjct: 759 PGRSPPAPARQSVIHVQASGARDEACAPAVGALRPCATYP 798


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 55/185 (29%), Positives = 65/185 (35%), Gaps = 41/185 (22%)

Query: 59  MALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSM------ 112
           +A  + A AP   A AA A  SP P+  G  + R   AP+A P P  AA P         
Sbjct: 140 VAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRA--APLAAPPPAPAAPPAVAPPAGPR 197

Query: 113 -------------VPGPPAPP-PSGDQQP------APSAGSGSTADLPEWPWPLQLLLLL 152
                        +P PP PP P   QQP       P  G    A     P  L+ ++  
Sbjct: 198 RAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREVVRY 257

Query: 153 APGRGCARGRAGEGRAQCAGSPSTAPRPR------------TCSSPGRATPHRPAGQPSH 200
             G G A GR   GR Q       A R R                PGRA P   A +PS 
Sbjct: 258 LGGSGGAGGRLTRGRVQGLLEEEAAARGRLERTRLGALALPRGDRPGRAPPAASA-RPSR 316

Query: 201 PGGAG 205
               G
Sbjct: 317 SKRGG 321



 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 42/133 (31%), Positives = 51/133 (38%), Gaps = 11/133 (8%)

Query: 72  AEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSA 131
           A AAAA  +P P+ +         APVA   P RA  P +      APP  G  QP P A
Sbjct: 118 APAAAAAAAPPPTPAPPPPP----APVAAAAPARA--PRAAAAAATAPPSPGPAQPGPRA 171

Query: 132 GSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATP 191
              +    P  P P     +  P    A  R     A  A  P   P P+  + P +  P
Sbjct: 172 QRAAPLAAPP-PAPAAPPAVAPP----AGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQP 226

Query: 192 HRPAGQPSHPGGA 204
             P  QP   GGA
Sbjct: 227 PPPQPQPPPEGGA 239



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 55  ASSSMALLSSAAAPEEEAEAAAA--TRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSM 112
           A+++ A   + A P   A  AAA   R+P+ +++ +++    G     P   RAA   + 
Sbjct: 121 AAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAP 180

Query: 113 VPGPPAP----PPSGDQQPAPSAGSGSTADLPEWPWP 145
            P P AP    PP+G ++  P A +     LP  P P
Sbjct: 181 PPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQP 217



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 45/166 (27%), Positives = 53/166 (31%), Gaps = 31/166 (18%)

Query: 82  QPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPS-AGSGSTADLP 140
           QP   G++      AP   P    AA+P      PP P P     PA +   + + A  P
Sbjct: 100 QPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAP 159

Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
             P P Q      PG           RAQ A +P  AP P   + P  A P  P   P  
Sbjct: 160 PSPGPAQ------PG----------PRAQRA-APLAAPPPAPAAPPAVAPPAGPRRAPP- 201

Query: 201 PGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPVHGQPPP 246
                       PA          P     P Q     P   QPPP
Sbjct: 202 ------------PAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPP 235


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
          Length = 416

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 47/175 (26%), Positives = 64/175 (36%), Gaps = 24/175 (13%)

Query: 83  PSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEW 142
           P   G + SR   +P  +P+ G     G+   GPP PPP   Q P P  G     + P+ 
Sbjct: 162 PPPQGDNKSRSSRSPPGKPQ-GPPPQGGNQPQGPP-PPPGKPQGPPPQGG-----NKPQG 214

Query: 143 PWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPG 202
           P P        PG+       G+ ++Q A SP   P+      P     ++P G P  PG
Sbjct: 215 PPP--------PGKPQGPPPQGDNKSQSARSPPGKPQ-----GPPPQGGNQPQGPPPPPG 261

Query: 203 GAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTPEVAG 257
                P+   P  G  P     P     P   G       + PP   +G P   G
Sbjct: 262 K----PQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGG 312



 Score = 38.1 bits (87), Expect = 0.008
 Identities = 51/207 (24%), Positives = 77/207 (37%), Gaps = 32/207 (15%)

Query: 58  SMALLSSAAAP-------EEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPG 110
           S+ALL+ ++A        +EE+ +  A         G +  +G  +P  +P+ G     G
Sbjct: 7   SVALLALSSAQNLNEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQ-GPPPQGG 65

Query: 111 SMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQC 170
           +   GPP PPP   Q P P  G     + P+ P P        PG+       G+ +++ 
Sbjct: 66  NQPQGPP-PPPGKPQGPPPQGG-----NKPQGPPP--------PGKPQGPPPQGD-KSRS 110

Query: 171 AGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHL 230
             SP   P+      P     ++P G P  PG     P+   P  G  P     P     
Sbjct: 111 PRSPPGKPQ-----GPPPQGGNQPQGPPPPPGK----PQGPPPQGGNKPQGPPPPGKPQG 161

Query: 231 PRQSGVVGPVHGQPPPHFRKGTPEVAG 257
           P   G       + PP   +G P   G
Sbjct: 162 PPPQGDNKSRSSRSPPGKPQGPPPQGG 188



 Score = 38.1 bits (87), Expect = 0.008
 Identities = 48/200 (24%), Positives = 61/200 (30%), Gaps = 39/200 (19%)

Query: 68  PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASP----GSMVPGPP------ 117
           P +    + ++RSP     G     G       P PG+   P    G+   GPP      
Sbjct: 163 PPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 222

Query: 118 APPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTA 177
            PPP GD +   S  + S    P+ P          P +G   G   +G     G P   
Sbjct: 223 GPPPQGDNK---SQSARSPPGKPQGP----------PPQG---GNQPQGPPPPPGKPQGP 266

Query: 178 PRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHPVLAHLPRQSGVV 237
           P        G   P +P G P   G      R             S P     P   G  
Sbjct: 267 PPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSR-------------SPPGKPQGPPPQGGN 313

Query: 238 GPVHGQPPPHFRKGTPEVAG 257
            P    PPP   +G P   G
Sbjct: 314 QPQGPPPPPGKPQGPPPQGG 333



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 37/130 (28%), Positives = 47/130 (36%), Gaps = 12/130 (9%)

Query: 68  PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASP----GSMVPGPPAPPPSG 123
           P +    + ++RSP     G     G       P PG+   P    G+   GP  PPP  
Sbjct: 287 PPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP--PPPGK 344

Query: 124 DQQPAPSAGSGSTA-----DLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAP 178
            Q P P  GS S +       P+ P P Q           A G   + +A  AG P   P
Sbjct: 345 PQGPPPQGGSKSRSARSPPGKPQGP-PQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPP 403

Query: 179 RPRTCSSPGR 188
           RP     P R
Sbjct: 404 RPPQGGRPSR 413



 Score = 37.0 bits (84), Expect = 0.017
 Identities = 37/144 (25%), Positives = 47/144 (32%), Gaps = 24/144 (16%)

Query: 68  PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASP----GSMVPGPPAPPPSG 123
           P +    + + RSP     G     G       P PG+   P    G+   GP  PPP  
Sbjct: 225 PPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP--PPPGK 282

Query: 124 DQQPAPSAGSGSTAD-----LPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAP 178
            Q P P  GS S +       P+ P          P +G   G   +G     G P   P
Sbjct: 283 PQGPPPQGGSKSRSSRSPPGKPQGP----------PPQG---GNQPQGPPPPPGKPQGPP 329

Query: 179 RPRTCSSPGRATPHRPAGQPSHPG 202
                   G   P +P G P   G
Sbjct: 330 PQGGNKPQGPPPPGKPQGPPPQGG 353



 Score = 36.6 bits (83), Expect = 0.022
 Identities = 49/212 (23%), Positives = 62/212 (29%), Gaps = 40/212 (18%)

Query: 56  SSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASP----GS 111
           S S+   +   AP +         SP     G     G       P PG+   P    G+
Sbjct: 28  SPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 87

Query: 112 MVPGPP------APPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGE 165
              GPP       PPP GD+  +P +  G     P+ P          P +G   G   +
Sbjct: 88  KPQGPPPPGKPQGPPPQGDKSRSPRSPPGK----PQGP----------PPQG---GNQPQ 130

Query: 166 GRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPGGAGCCPRVCGPAAGCLPLCASHP 225
           G     G P   P        G   P +P G P          R             S P
Sbjct: 131 GPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSR-------------SPP 177

Query: 226 VLAHLPRQSGVVGPVHGQPPPHFRKGTPEVAG 257
                P   G   P    PPP   +G P   G
Sbjct: 178 GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 209



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 68  PEEEAEAAAATRSPQPSSSGSSSSRG----GGAPVARPEPGRAASPGSMVP-GPPAPPPS 122
           P +    + + RSP     G     G    G  P A   P +  +P +  P GPP PP  
Sbjct: 349 PPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQG 408

Query: 123 GDQQPAP 129
           G     P
Sbjct: 409 GRPSRPP 415


>gi|169218002 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 218

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 49/154 (31%), Positives = 63/154 (40%), Gaps = 39/154 (25%)

Query: 80  SPQPSSSGSSSSRGGGAPVARPE----PGRAASPGSMVPGPPAPPPSGD-QQPAPSAGSG 134
           +P+P+ + S +  G G PVA  +    PG     G+    PP  P  GD + P P+A   
Sbjct: 59  TPEPARAPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAA--- 115

Query: 135 STADLPEWPWPLQLLLLLAPGR-----GCARGRAGEGRAQCAG--SPSTAPR---PRTC- 183
                       Q+ L    GR     G   GRAG+ +A  A    P+ AP+   P  C 
Sbjct: 116 ------------QISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCR 163

Query: 184 -SSPG--RATPHRPAGQPSHPGGAGCCPRVCGPA 214
              PG  RA PH P     H G    CP  CG A
Sbjct: 164 QQPPGNSRARPHSP-----HLGTRARCPCGCGEA 192


>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
           sapiens]
          Length = 870

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 54/162 (33%), Positives = 65/162 (40%), Gaps = 37/162 (22%)

Query: 75  AAATRSPQPSSSGSSSSRGGGAPVARPE---PGRAA---SPGSMVPGPPAPPPSGDQQPA 128
           A   RS  P     + S  G A    PE   PGR A   SPG   PGP    P G   P 
Sbjct: 648 AQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPV---PGGLSVPT 704

Query: 129 P---SAGSGSTADLPEWPWPLQLLLLLAPGRGCARG-------RAGEGRAQCAGSPSTAP 178
           P    AG  S ADL +  +P++    +A GR   RG       R G  R Q   SP+ +P
Sbjct: 705 PCGRGAGDFSEADLADRAFPVRGAGPIA-GRRRRRGWTFAAALRKGAPREQPPASPAASP 763

Query: 179 RPRTCSSP-------------GRATPHRPAGQPSHPGGAGCC 207
               C +P             GRAT   P   P+ PG +G C
Sbjct: 764 ----CQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLC 801


>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
           sapiens]
          Length = 538

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 54/162 (33%), Positives = 65/162 (40%), Gaps = 37/162 (22%)

Query: 75  AAATRSPQPSSSGSSSSRGGGAPVARPE---PGRAA---SPGSMVPGPPAPPPSGDQQPA 128
           A   RS  P     + S  G A    PE   PGR A   SPG   PGP    P G   P 
Sbjct: 316 AQGPRSSTPECPVVNGSEWGLAAPLSPERGSPGRPAFLRSPGLCGPGPV---PGGLSVPT 372

Query: 129 P---SAGSGSTADLPEWPWPLQLLLLLAPGRGCARG-------RAGEGRAQCAGSPSTAP 178
           P    AG  S ADL +  +P++    +A GR   RG       R G  R Q   SP+ +P
Sbjct: 373 PCGRGAGDFSEADLADRAFPVRGAGPIA-GRRRRRGWTFAAALRKGAPREQPPASPAASP 431

Query: 179 RPRTCSSP-------------GRATPHRPAGQPSHPGGAGCC 207
               C +P             GRAT   P   P+ PG +G C
Sbjct: 432 ----CQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFSGLC 469



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 65  AAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSM--VPGPPAPPP 121
           AAA    +      R+P     G    RGGG   A P     ASP     +P PP PPP
Sbjct: 182 AAAGGASSRRRQRGRNPALIVRGPGPRRGGGLTSAPPGLPPLASPPPFWELPRPPPPPP 240


>gi|169163057 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 49/154 (31%), Positives = 63/154 (40%), Gaps = 39/154 (25%)

Query: 80  SPQPSSSGSSSSRGGGAPVARPE----PGRAASPGSMVPGPPAPPPSGD-QQPAPSAGSG 134
           +P+P+ + S +  G G PVA  +    PG     G+    PP  P  GD + P P+A   
Sbjct: 86  TPEPARAPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAA--- 142

Query: 135 STADLPEWPWPLQLLLLLAPGR-----GCARGRAGEGRAQCAG--SPSTAPR---PRTC- 183
                       Q+ L    GR     G   GRAG+ +A  A    P+ AP+   P  C 
Sbjct: 143 ------------QISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCR 190

Query: 184 -SSPG--RATPHRPAGQPSHPGGAGCCPRVCGPA 214
              PG  RA PH P     H G    CP  CG A
Sbjct: 191 QQPPGNSRARPHSP-----HLGTRARCPCGCGEA 219


>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 48/176 (27%), Positives = 59/176 (33%), Gaps = 23/176 (13%)

Query: 81  PQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
           P P  +G +     GA    P  GRAA  G     P    P+G   P    G  S     
Sbjct: 85  PPPKDTGIARVPLAGA-AGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ--- 140

Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
                    ++   GRG     A    A  AG+P+  P       PGR TP  P G+ + 
Sbjct: 141 ---------VMTPQGRGTVAAAAVAATASIAGAPTQYP-------PGRGTPPPPVGRATP 184

Query: 201 PGGAGCCPRVCGPAAG---CLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
           P G    P    P  G    LP     P+    P        + G PPP  R   P
Sbjct: 185 PPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 68  PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAA-SPGSMVPGPPAPPPSGDQQ 126
           P+     AAA  +   S +G+ +    G     P  GRA   PG M P P   PP G   
Sbjct: 144 PQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPI 203

Query: 127 PAPSA 131
             P A
Sbjct: 204 GLPPA 208


>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 48/176 (27%), Positives = 59/176 (33%), Gaps = 23/176 (13%)

Query: 81  PQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
           P P  +G +     GA    P  GRAA  G     P    P+G   P    G  S     
Sbjct: 85  PPPKDTGIARVPLAGA-AGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ--- 140

Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
                    ++   GRG     A    A  AG+P+  P       PGR TP  P G+ + 
Sbjct: 141 ---------VMTPQGRGTVAAAAVAATASIAGAPTQYP-------PGRGTPPPPVGRATP 184

Query: 201 PGGAGCCPRVCGPAAG---CLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
           P G    P    P  G    LP     P+    P        + G PPP  R   P
Sbjct: 185 PPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 68  PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAA-SPGSMVPGPPAPPPSGDQQ 126
           P+     AAA  +   S +G+ +    G     P  GRA   PG M P P   PP G   
Sbjct: 144 PQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPI 203

Query: 127 PAPSA 131
             P A
Sbjct: 204 GLPPA 208


>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 48/176 (27%), Positives = 59/176 (33%), Gaps = 23/176 (13%)

Query: 81  PQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
           P P  +G +     GA    P  GRAA  G     P    P+G   P    G  S     
Sbjct: 85  PPPKDTGIARVPLAGA-AGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ--- 140

Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
                    ++   GRG     A    A  AG+P+  P       PGR TP  P G+ + 
Sbjct: 141 ---------VMTPQGRGTVAAAAVAATASIAGAPTQYP-------PGRGTPPPPVGRATP 184

Query: 201 PGGAGCCPRVCGPAAG---CLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
           P G    P    P  G    LP     P+    P        + G PPP  R   P
Sbjct: 185 PPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 68  PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAA-SPGSMVPGPPAPPPSGDQQ 126
           P+     AAA  +   S +G+ +    G     P  GRA   PG M P P   PP G   
Sbjct: 144 PQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPI 203

Query: 127 PAPSA 131
             P A
Sbjct: 204 GLPPA 208


>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 48/176 (27%), Positives = 59/176 (33%), Gaps = 23/176 (13%)

Query: 81  PQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
           P P  +G +     GA    P  GRAA  G     P    P+G   P    G  S     
Sbjct: 85  PPPKDTGIARVPLAGA-AGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ--- 140

Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
                    ++   GRG     A    A  AG+P+  P       PGR TP  P G+ + 
Sbjct: 141 ---------VMTPQGRGTVAAAAVAATASIAGAPTQYP-------PGRGTPPPPVGRATP 184

Query: 201 PGGAGCCPRVCGPAAG---CLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
           P G    P    P  G    LP     P+    P        + G PPP  R   P
Sbjct: 185 PPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 68  PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAA-SPGSMVPGPPAPPPSGDQQ 126
           P+     AAA  +   S +G+ +    G     P  GRA   PG M P P   PP G   
Sbjct: 144 PQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPI 203

Query: 127 PAPSA 131
             P A
Sbjct: 204 GLPPA 208


>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 48/176 (27%), Positives = 59/176 (33%), Gaps = 23/176 (13%)

Query: 81  PQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLP 140
           P P  +G +     GA    P  GRAA  G     P    P+G   P    G  S     
Sbjct: 85  PPPKDTGIARVPLAGA-AGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ--- 140

Query: 141 EWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSH 200
                    ++   GRG     A    A  AG+P+  P       PGR TP  P G+ + 
Sbjct: 141 ---------VMTPQGRGTVAAAAVAATASIAGAPTQYP-------PGRGTPPPPVGRATP 184

Query: 201 PGGAGCCPRVCGPAAG---CLPLCASHPVLAHLPRQSGVVGPVHGQPPPHFRKGTP 253
           P G    P    P  G    LP     P+    P        + G PPP  R   P
Sbjct: 185 PPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 68  PEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAA-SPGSMVPGPPAPPPSGDQQ 126
           P+     AAA  +   S +G+ +    G     P  GRA   PG M P P   PP G   
Sbjct: 144 PQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPI 203

Query: 127 PAPSA 131
             P A
Sbjct: 204 GLPPA 208


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.128    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,092,771
Number of Sequences: 37866
Number of extensions: 1146417
Number of successful extensions: 21205
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 1847
Number of HSP's that attempted gapping in prelim test: 10112
Number of HSP's gapped (non-prelim): 8453
length of query: 258
length of database: 18,247,518
effective HSP length: 100
effective length of query: 158
effective length of database: 14,460,918
effective search space: 2284825044
effective search space used: 2284825044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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