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Search of human proteins with 239746722
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746722 PREDICTED: hypothetical protein XP_002343802 [Homo
sapiens]
(140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746722 PREDICTED: hypothetical protein XP_002343802 [Homo ... 294 2e-80
gi|208431824 forkhead box I3 [Homo sapiens] 34 0.034
gi|169165345 PREDICTED: hypothetical protein [Homo sapiens] 32 0.22
gi|113414915 PREDICTED: hypothetical protein [Homo sapiens] 32 0.22
gi|239741942 PREDICTED: hypothetical protein [Homo sapiens] 32 0.22
gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens] 31 0.29
gi|239752218 PREDICTED: hypothetical protein XP_002348134 [Homo ... 31 0.29
gi|239757005 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1
gi|239751519 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1
gi|239746026 PREDICTED: hypothetical protein XP_002344173 [Homo ... 29 1.1
gi|95147356 mitogen-activated protein kinase 15 [Homo sapiens] 29 1.1
gi|13376844 ring finger protein 39 isoform 1 [Homo sapiens] 29 1.1
gi|25777716 ring finger protein 39 isoform 2 [Homo sapiens] 29 1.1
gi|47087197 HLA complex P5 [Homo sapiens] 29 1.1
gi|154800485 centromere protein N isoform 1 [Homo sapiens] 29 1.1
gi|153792095 N-acetylgalactosaminyltransferase 11 [Homo sapiens] 29 1.4
gi|112421108 capicua homolog [Homo sapiens] 29 1.4
gi|50659091 scavenger receptor cysteine-rich type 1 precursor [H... 28 1.9
gi|169210434 PREDICTED: hypothetical protein [Homo sapiens] 28 2.5
gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens] 28 2.5
gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens] 28 2.5
gi|239754979 PREDICTED: hypothetical protein [Homo sapiens] 27 4.2
gi|171543895 ataxin 2 [Homo sapiens] 27 4.2
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 27 4.2
gi|117938328 l(3)mbt-like isoform I [Homo sapiens] 27 4.2
gi|117938330 l(3)mbt-like isoform II [Homo sapiens] 27 4.2
gi|225007652 processing of precursor 1 [Homo sapiens] 27 5.5
gi|225007650 processing of precursor 1 [Homo sapiens] 27 5.5
gi|225007648 processing of precursor 1 [Homo sapiens] 27 5.5
gi|225903385 arginine vasopressin receptor 2 isoform 2 [Homo sap... 27 5.5
>gi|239746722 PREDICTED: hypothetical protein XP_002343802 [Homo
sapiens]
Length = 140
Score = 294 bits (752), Expect = 2e-80
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MEPRLLGCEHQRSPPGAPQPQSLHEHQWAEAASLWGEGQATWVWKARGTPGHPTLEEETE 60
MEPRLLGCEHQRSPPGAPQPQSLHEHQWAEAASLWGEGQATWVWKARGTPGHPTLEEETE
Sbjct: 1 MEPRLLGCEHQRSPPGAPQPQSLHEHQWAEAASLWGEGQATWVWKARGTPGHPTLEEETE 60
Query: 61 GLRSLLCSSSPDLLRALKPGASVALLLQVFVKAAPGRRRALRRGAAHPGLSTLIKPGESG 120
GLRSLLCSSSPDLLRALKPGASVALLLQVFVKAAPGRRRALRRGAAHPGLSTLIKPGESG
Sbjct: 61 GLRSLLCSSSPDLLRALKPGASVALLLQVFVKAAPGRRRALRRGAAHPGLSTLIKPGESG 120
Query: 121 HWAGERGMRGREHLGTDISV 140
HWAGERGMRGREHLGTDISV
Sbjct: 121 HWAGERGMRGREHLGTDISV 140
>gi|208431824 forkhead box I3 [Homo sapiens]
Length = 420
Score = 34.3 bits (77), Expect = 0.034
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 6 LGCEHQRSPPGAPQPQSLHEHQWAEAASLWGEGQATWVWKARGTPGHPTLEEETEGLRSL 65
LG PPGA L Q AA +G Q + A P P L L
Sbjct: 76 LGAPPPPPPPGAAAGPFL---QPPPAAGTFGCSQRPFAQPAPAAPASPAAPAGPGELGWL 132
Query: 66 LCSSSPDLLRALKPGASVALLLQVFVKAAPGRRRAL 101
+S DL++ ++P S + L+ + +++AP R+ L
Sbjct: 133 SMASREDLMKMVRPPYSYSALIAMAIQSAPERKLTL 168
>gi|169165345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 31.6 bits (70), Expect = 0.22
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 96 GRRRALRRGAAHPGLSTLIKPGESGHWAGERGMRGREHLGTDI 138
G RR L G HPGLS + P S W RG G GT +
Sbjct: 54 GSRRPLPAGP-HPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGV 95
>gi|113414915 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 31.6 bits (70), Expect = 0.22
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 96 GRRRALRRGAAHPGLSTLIKPGESGHWAGERGMRGREHLGTDI 138
G RR L G HPGLS + P S W RG G GT +
Sbjct: 69 GSRRPLPAGP-HPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGV 110
>gi|239741942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 31.6 bits (70), Expect = 0.22
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 96 GRRRALRRGAAHPGLSTLIKPGESGHWAGERGMRGREHLGTDI 138
G RR L G HPGLS + P S W RG G GT +
Sbjct: 69 GSRRPLPAGP-HPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGV 110
>gi|239757727 PREDICTED: similar to hCG2013141 [Homo sapiens]
Length = 133
Score = 31.2 bits (69), Expect = 0.29
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 37 EGQATWVWKARGTPGHPTLEEETEGLRSL-LCSSSPDL--LRALKPGASVALLLQVFVKA 93
EG +TW RG G P+ T GL +L SP L L A + A Q ++
Sbjct: 42 EGLSTWASSCRGGTGSPS----TAGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRW 97
Query: 94 APGRRRALRRGAAH 107
AP RA R GA+H
Sbjct: 98 APCEARASRMGASH 111
>gi|239752218 PREDICTED: hypothetical protein XP_002348134 [Homo
sapiens]
Length = 133
Score = 31.2 bits (69), Expect = 0.29
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 37 EGQATWVWKARGTPGHPTLEEETEGLRSL-LCSSSPDL--LRALKPGASVALLLQVFVKA 93
EG +TW RG G P+ T GL +L SP L L A + A Q ++
Sbjct: 42 EGLSTWASSCRGGTGSPS----TAGLPALTTLELSPGLSHLPAGQGSGLAACHAQASLRW 97
Query: 94 APGRRRALRRGAAH 107
AP RA R GA+H
Sbjct: 98 APCEARASRMGASH 111
>gi|239757005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 29.3 bits (64), Expect = 1.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 90 FVKAAPGRRRALRRGAAHPGLSTLIKPGESGH----WAGERGMRGREHLGTDI 138
++ APGRRR+L L + ++PG GH AG + +R R L T +
Sbjct: 115 YLGVAPGRRRSL--------LPSAVQPGRGGHGAGGGAGPQALRTRAPLATPL 159
>gi|239751519 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 29.3 bits (64), Expect = 1.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 90 FVKAAPGRRRALRRGAAHPGLSTLIKPGESGH----WAGERGMRGREHLGTDI 138
++ APGRRR+L L + ++PG GH AG + +R R L T +
Sbjct: 115 YLGVAPGRRRSL--------LPSAVQPGRGGHGAGGGAGPQALRTRAPLATPL 159
>gi|239746026 PREDICTED: hypothetical protein XP_002344173 [Homo
sapiens]
Length = 183
Score = 29.3 bits (64), Expect = 1.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 90 FVKAAPGRRRALRRGAAHPGLSTLIKPGESGH----WAGERGMRGREHLGTDI 138
++ APGRRR+L L + ++PG GH AG + +R R L T +
Sbjct: 115 YLGVAPGRRRSL--------LPSAVQPGRGGHGAGGGAGPQALRTRAPLATPL 159
>gi|95147356 mitogen-activated protein kinase 15 [Homo sapiens]
Length = 544
Score = 29.3 bits (64), Expect = 1.1
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 86 LLQVFVKAAPGRRRALRRGAAHPGLSTLIKPGESGHWAGERGMRGREHLGTDISV 140
LL+ + AP +R + + HP + P S WA E +R R H G +SV
Sbjct: 280 LLRRLLVFAPDKRLSATQALQHPYVQRFHCP--SDEWAREADVRPRAHEGVQLSV 332
>gi|13376844 ring finger protein 39 isoform 1 [Homo sapiens]
Length = 420
Score = 29.3 bits (64), Expect = 1.1
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 22/101 (21%)
Query: 25 EHQWAEA--ASLWGEGQATWVWKARGTPGHPTLEEETEGLRSLLCSSSPDLLRALKPGAS 82
EH + A A WG AT GT PT + C P R+L+
Sbjct: 104 EHSFCRACLARRWGTPPAT------GTEASPT---------ACPCCGLPCPRRSLRSNVR 148
Query: 83 VALLLQVFVK-----AAPGRRRALRRGAAHPGLSTLIKPGE 118
+A+ +++ + A PG R RRG P + L PGE
Sbjct: 149 LAVEVRISRELREKLAEPGARAGRRRGGRIPTMGCLDLPGE 189
>gi|25777716 ring finger protein 39 isoform 2 [Homo sapiens]
Length = 354
Score = 29.3 bits (64), Expect = 1.1
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 22/101 (21%)
Query: 25 EHQWAEA--ASLWGEGQATWVWKARGTPGHPTLEEETEGLRSLLCSSSPDLLRALKPGAS 82
EH + A A WG AT GT PT + C P R+L+
Sbjct: 104 EHSFCRACLARRWGTPPAT------GTEASPT---------ACPCCGLPCPRRSLRSNVR 148
Query: 83 VALLLQVFVK-----AAPGRRRALRRGAAHPGLSTLIKPGE 118
+A+ +++ + A PG R RRG P + L PGE
Sbjct: 149 LAVEVRISRELREKLAEPGARAGRRRGGRIPTMGCLDLPGE 189
>gi|47087197 HLA complex P5 [Homo sapiens]
Length = 132
Score = 29.3 bits (64), Expect = 1.1
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 15 PGAPQPQSLHEHQW-------AEAASLWGEGQATWVWKARGTPGHPTLEE---ETEGLRS 64
PG PQ H+ + AS WG G T W+ + HP + + +
Sbjct: 55 PGGPQGDPWVPHELLLPSLCDSSHASSWGSGSITCAWRGGDSSSHPLVSGHILSNSPVAA 114
Query: 65 LLCSS 69
++CSS
Sbjct: 115 VMCSS 119
>gi|154800485 centromere protein N isoform 1 [Homo sapiens]
Length = 353
Score = 29.3 bits (64), Expect = 1.1
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 55 LEEETEGLRSLLCSSSPDLLRALKPGASVALLLQV 89
L E E LR L+ SSP LL ALK A AL+ ++
Sbjct: 284 LAEREEPLRCLIKFSSPHLLEALKSLAPAALVCRI 318
>gi|153792095 N-acetylgalactosaminyltransferase 11 [Homo sapiens]
Length = 608
Score = 28.9 bits (63), Expect = 1.4
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 11 QRSPPGAPQPQSLHEHQWAEAASLWGEGQATWVWKAR---GTPGHPTLEEETEGLRSLLC 67
+R P G+P+ Q H A +W + + R T + + E E + L C
Sbjct: 382 KRRPYGSPEGQDTMTHNSLRLAHVWLDEYKEQYFSLRPDLKTKSYGNISERVELRKKLGC 441
Query: 68 SSSPDLLRALKP-----GASVALLLQVFVKAAPGRRRALRRG 104
S L + P G+ +FV P R + L+RG
Sbjct: 442 KSFKWYLDNVYPEMQISGSHAKPQQPIFVNRGPKRPKVLQRG 483
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 28.9 bits (63), Expect = 1.4
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 7 GCEHQRSPPGAPQPQSLHE---HQWAEAASLWGEGQA-TWVWKARGTPGHPTLEEETEGL 62
G PPGA P+S H S G+G T +A G PG P L+ ETE
Sbjct: 90 GSADPERPPGATCPESPGPGPPHPLGVVES--GKGPPPTTEEEASGPPGEPRLDSETESD 147
Query: 63 R--SLLCSSSPDLLRALKPG 80
+ L SP++ L PG
Sbjct: 148 HDDAFLSIMSPEIQLPLPPG 167
>gi|50659091 scavenger receptor cysteine-rich type 1 precursor [Homo
sapiens]
Length = 1453
Score = 28.5 bits (62), Expect = 1.9
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 6 LGCEHQRSPPGAPQPQSLHEHQWAEAASLWGEGQATWVWKARGTPGHPTLEEETEGLRSL 65
LGC G P QS + W + S G W + GT L + S+
Sbjct: 303 LGCGTALHFAGLPHLQSGSDVVWLDGVSCSGNESFLWDCRHSGTVNFDCLHQNDV---SV 359
Query: 66 LCSSSPDLLRALKPGAS 82
+CS DL L G++
Sbjct: 360 ICSDGADLELRLADGSN 376
>gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]
Length = 301
Score = 28.1 bits (61), Expect = 2.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 30 EAASLWGEGQATWVWKARGTPGHPTLEEET 59
E AS W G +ARG PG P+L ++
Sbjct: 23 ELASFWATGHRDPPSRARGPPGRPSLRSDS 52
>gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens]
Length = 370
Score = 28.1 bits (61), Expect = 2.5
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 15 PGAPQPQSLHEHQWAEAASLWGEGQATW----VWKARGTPGHPTLEEETEGLRSLLCSSS 70
PG P P + A L G G+ + P +P ++ + + SLL
Sbjct: 256 PGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVDMQPTDMHSLLLQPQ 315
Query: 71 PDLLRALKP 79
P LL+ L+P
Sbjct: 316 PPLLQPLQP 324
>gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens]
Length = 367
Score = 28.1 bits (61), Expect = 2.5
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 15 PGAPQPQSLHEHQWAEAASLWGEGQATW----VWKARGTPGHPTLEEETEGLRSLLCSSS 70
PG P P + A L G G+ + P +P ++ + + SLL
Sbjct: 253 PGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVDMQPTDMHSLLLQPQ 312
Query: 71 PDLLRALKP 79
P LL+ L+P
Sbjct: 313 PPLLQPLQP 321
>gi|239754979 PREDICTED: hypothetical protein [Homo sapiens]
Length = 780
Score = 27.3 bits (59), Expect = 4.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 11 QRSPPGAPQPQSLHEHQWAEAASLW 35
+RSPP AP + H W A LW
Sbjct: 355 RRSPPTAPGAATSSRHAWDTTALLW 379
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 27.3 bits (59), Expect = 4.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 9 EHQRSPPGAPQPQSLHEHQWAEAASLWGEGQATWVWKARGTPGHPTL 55
+H S P AP P H+HQ A+A L Q + ++ A P P++
Sbjct: 1160 QHGGSHP-APSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSM 1205
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 27.3 bits (59), Expect = 4.2
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 92 KAAPGRRRALR-RGAAHPGLSTLIKPGESG---HWAGERGMRGREHLG 135
+ APGR AL G A PG++ +PG SG H G RG +G
Sbjct: 121 RPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVG 168
>gi|117938328 l(3)mbt-like isoform I [Homo sapiens]
Length = 772
Score = 27.3 bits (59), Expect = 4.2
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 9 EHQRSPPGAPQPQSLHEHQWAEAASLWGEGQATWVWKA 46
E + P G P + +W+ + GE + W W++
Sbjct: 173 EEGKDPEGQPTASTPESEEWSSSQPATGEKKECWSWES 210
>gi|117938330 l(3)mbt-like isoform II [Homo sapiens]
Length = 738
Score = 27.3 bits (59), Expect = 4.2
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 9 EHQRSPPGAPQPQSLHEHQWAEAASLWGEGQATWVWKA 46
E + P G P + +W+ + GE + W W++
Sbjct: 173 EEGKDPEGQPTASTPESEEWSSSQPATGEKKECWSWES 210
>gi|225007652 processing of precursor 1 [Homo sapiens]
Length = 1024
Score = 26.9 bits (58), Expect = 5.5
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 23/57 (40%)
Query: 38 GQATWVWKARGTPG------------HPTLEEE-----------TEGLRSLLCSSSP 71
G T++WK++ TPG HPTL+++ E ++S +C + P
Sbjct: 306 GPVTFIWKSQRTPGDPSESRQLWIWLHPTLKQDILEEIKAACQCVEPIKSAVCIADP 362
>gi|225007650 processing of precursor 1 [Homo sapiens]
Length = 1024
Score = 26.9 bits (58), Expect = 5.5
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 23/57 (40%)
Query: 38 GQATWVWKARGTPG------------HPTLEEE-----------TEGLRSLLCSSSP 71
G T++WK++ TPG HPTL+++ E ++S +C + P
Sbjct: 306 GPVTFIWKSQRTPGDPSESRQLWIWLHPTLKQDILEEIKAACQCVEPIKSAVCIADP 362
>gi|225007648 processing of precursor 1 [Homo sapiens]
Length = 1024
Score = 26.9 bits (58), Expect = 5.5
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 23/57 (40%)
Query: 38 GQATWVWKARGTPG------------HPTLEEE-----------TEGLRSLLCSSSP 71
G T++WK++ TPG HPTL+++ E ++S +C + P
Sbjct: 306 GPVTFIWKSQRTPGDPSESRQLWIWLHPTLKQDILEEIKAACQCVEPIKSAVCIADP 362
>gi|225903385 arginine vasopressin receptor 2 isoform 2 [Homo
sapiens]
Length = 309
Score = 26.9 bits (58), Expect = 5.5
Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 50 PGHPTLEEETEGLRSLLCSSSP-DLLRALKPGASVALLLQVFVKAAPGRRRALRRGAAHP 108
PGHP+L L S P D L A +ALL VFV A L G
Sbjct: 11 PGHPSLPS----LPSNSSQERPLDTRDPLLARAELALLSIVFVAVA------LSNGLV-- 58
Query: 109 GLSTLIKPGESGHWA 123
L+ L + G GHWA
Sbjct: 59 -LAALARRGRRGHWA 72
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,328,208
Number of Sequences: 37866
Number of extensions: 368547
Number of successful extensions: 1187
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1158
Number of HSP's gapped (non-prelim): 66
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.