Guide to the Human Genome
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Name: LOC100288122 Sequence: fasta or formatted (183aa) NCBI GI: 239751519
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {183aa} PREDICTED: hypothetical protein XP_002344173
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         18           2
 C cysteine            3.3          6           1
 D aspartate           0.5          1           1
 E glutamate           3.3          6           2
 F phenylalanine       1.6          3           1
 G glycine            12.0         22           3
 H histidine           3.8          7           1
 I isoleucine          0.5          1           1
 K lysine              1.6          3           1
 L leucine            14.8         27           2
 M methionine          0.5          1           1
 N asparagine          1.1          2           1
 P proline            10.9         20           1
 Q glutamine           5.5         10           1
 R arginine            9.3         17           3
 S serine             11.5         21           3
 T threonine           2.2          4           1
 V valine              4.9          9           1
 W tryptophan          1.1          2           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293599          1.000   PREDICTED: hypothetical protein 
LOC100288122          0.994   PREDICTED: hypothetical protein XP_002344173 
PABPN1                0.040   poly(A) binding protein, nuclear 1 
LOC100292754          0.034   PREDICTED: hypothetical protein 
LOC100290764          0.034   PREDICTED: hypothetical protein XP_002346421 
LOC100287607          0.034   PREDICTED: hypothetical protein XP_002342119 
LOC338758             0.028   PREDICTED: hypothetical protein 
LOC338758             0.028   PREDICTED: hypothetical protein 
LOC338758             0.028   PREDICTED: hypothetical protein 
LOC401180             0.028   PREDICTED: similar to hCG1745223 
LOC401180             0.028   PREDICTED: similar to hCG1745223 
LOC401180             0.028   PREDICTED: similar to hCG1745223 
TMEM215               0.028   transmembrane protein 215 
PCSK6                 0.025   paired basic amino acid cleaving system 4 isoform e ...
PCSK6                 0.025   paired basic amino acid cleaving system 4 isoform c ...
PCSK6                 0.025   paired basic amino acid cleaving system 4 isoform f ...
PCSK6                 0.025   paired basic amino acid cleaving system 4 isoform d ...
PCSK6                 0.025   paired basic amino acid cleaving system 4 isoform h ...
PCSK6                 0.025   paired basic amino acid cleaving system 4 isoform g ...
PCSK6                 0.025   paired basic amino acid cleaving system 4 isoform a p...
PCSK6                 0.025   paired basic amino acid cleaving system 4 isoform b ...
XYLT1                 0.025   xylosyltransferase I 
FZD8                  0.025   frizzled 8 
LOC100289951          0.023   PREDICTED: hypothetical protein XP_002347042 
LOC100287492          0.023   PREDICTED: hypothetical protein XP_002342893 
DACT3                 0.023   thymus expressed gene 3-like 
TACC2                 0.023   transforming, acidic coiled-coil containing protein...
LOC100291782          0.023   PREDICTED: hypothetical protein XP_002346152 
WNK2                  0.023   WNK lysine deficient protein kinase 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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