Guide to the Human Genome
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Name: LOC100286913 Sequence: fasta or formatted (140aa) NCBI GI: 239746722
Description:

PREDICTED: hypothetical protein XP_002343802

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         15           2
 C cysteine            1.4          2           1
 D aspartate           1.4          2           1
 E glutamate           8.6         12           3
 F phenylalanine       0.7          1           1
 G glycine            12.1         17           1
 H histidine           5.0          7           1
 I isoleucine          1.4          2           1
 K lysine              2.9          4           1
 L leucine            12.9         18           3
 M methionine          1.4          2           1
 N asparagine          0.0          0           0
 P proline             8.6         12           2
 Q glutamine           4.3          6           1
 R arginine            9.3         13           3
 S serine              7.9         11           3
 T threonine           4.3          6           1
 V valine              3.6          5           1
 W tryptophan          3.6          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343802 
FOXI3                 0.033   forkhead box I3 
LOC642891             0.026   PREDICTED: hypothetical protein 
LOC642891             0.026   PREDICTED: hypothetical protein 
LOC642891             0.026   PREDICTED: hypothetical protein 
LOC100292273          0.022   PREDICTED: similar to hCG2013141 
LOC100291054          0.022   PREDICTED: hypothetical protein XP_002348134 
LOC100293599          0.015   PREDICTED: hypothetical protein 
LOC100288122          0.015   PREDICTED: hypothetical protein 
LOC100288122          0.015   PREDICTED: hypothetical protein XP_002344173 
MAPK15                0.015   mitogen-activated protein kinase 15 
RNF39                 0.015   ring finger protein 39 isoform 1 
RNF39                 0.015   ring finger protein 39 isoform 2 
HCP5                  0.015   HLA complex P5 
CENPN                 0.015   centromere protein N isoform 1 
GALNT11               0.015   N-acetylgalactosaminyltransferase 11 
CIC                   0.015   capicua homolog 
CD163L1               0.011   scavenger receptor cysteine-rich type 1 precursor [H...
LOC730183             0.011   PREDICTED: hypothetical protein 
RBM9                  0.011   RNA binding motif protein 9 isoform 4 
RBM9                  0.011   RNA binding motif protein 9 isoform 2 
LOC100292407          0.007   PREDICTED: hypothetical protein 
ATXN2                 0.007   ataxin 2 
BBC3                  0.007   BCL2 binding component 3 isoform 1 
L3MBTL                0.007   l(3)mbt-like isoform I 
L3MBTL                0.007   l(3)mbt-like isoform II 
POP1                  0.007   processing of precursor 1 
POP1                  0.007   processing of precursor 1 
POP1                  0.007   processing of precursor 1 
AVPR2                 0.007   arginine vasopressin receptor 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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