Guide to the Human Genome
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Search of human proteins with 239746671

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746671 PREDICTED: hypothetical protein XP_002343829 [Homo
sapiens]
         (129 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757650 PREDICTED: hypothetical protein [Homo sapiens]           276   3e-75
gi|239752141 PREDICTED: hypothetical protein XP_002348152 [Homo ...   276   3e-75
gi|239746671 PREDICTED: hypothetical protein XP_002343829 [Homo ...   276   3e-75
gi|193211610 dipeptidase 3 isoform b [Homo sapiens]                    31   0.24 
gi|193211608 dipeptidase 3 isoform a [Homo sapiens]                    31   0.24 
gi|169790825 odz, odd Oz/ten-m homolog 4 [Homo sapiens]                29   1.2  
gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens]    28   1.5  
gi|42476169 Paf1, RNA polymerase II associated factor, homolog [...    28   1.5  
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]            28   2.6  
gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo ...    28   2.6  
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]            28   2.6  
gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo ...    28   2.6  
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]            28   2.6  
gi|209862785 anoctamin 2 [Homo sapiens]                                27   3.4  
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]            27   3.4  
gi|38788333 remodeling and spacing factor 1 [Homo sapiens]             27   4.5  
gi|221136993 thioredoxin domain containing 14 isoform 2 [Homo sa...    27   4.5  
gi|7705726 thioredoxin domain containing 14 isoform 1 [Homo sapi...    27   4.5  
gi|239754173 PREDICTED: hypothetical protein [Homo sapiens]            27   5.8  
gi|239748693 PREDICTED: hypothetical protein XP_002346765 [Homo ...    27   5.8  
gi|239742716 PREDICTED: hypothetical protein XP_002342633 [Homo ...    27   5.8  
gi|93277096 limbin [Homo sapiens]                                      27   5.8  
gi|71051602 family with sequence similarity 108, member B1 isofo...    27   5.8  
gi|71051600 family with sequence similarity 108, member B1 isofo...    27   5.8  
gi|167614488 TBC1 domain family, member 10B [Homo sapiens]             26   7.6  
gi|20070321 nicotinamide mononucleotide adenylyltransferase 1 [H...    26   9.9  
gi|17136078 VGF nerve growth factor inducible precursor [Homo sa...    26   9.9  
gi|38371744 keratin associated protein 12-4 [Homo sapiens]             26   9.9  

>gi|239757650 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 129

 Score =  276 bits (706), Expect = 3e-75
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60
           MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER
Sbjct: 1   MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60

Query: 61  KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120
           KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS
Sbjct: 61  KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120

Query: 121 NINQHFGEI 129
           NINQHFGEI
Sbjct: 121 NINQHFGEI 129


>gi|239752141 PREDICTED: hypothetical protein XP_002348152 [Homo
           sapiens]
          Length = 129

 Score =  276 bits (706), Expect = 3e-75
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60
           MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER
Sbjct: 1   MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60

Query: 61  KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120
           KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS
Sbjct: 61  KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120

Query: 121 NINQHFGEI 129
           NINQHFGEI
Sbjct: 121 NINQHFGEI 129


>gi|239746671 PREDICTED: hypothetical protein XP_002343829 [Homo
           sapiens]
          Length = 129

 Score =  276 bits (706), Expect = 3e-75
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60
           MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER
Sbjct: 1   MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60

Query: 61  KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120
           KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS
Sbjct: 61  KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120

Query: 121 NINQHFGEI 129
           NINQHFGEI
Sbjct: 121 NINQHFGEI 129


>gi|193211610 dipeptidase 3 isoform b [Homo sapiens]
          Length = 512

 Score = 31.2 bits (69), Expect = 0.24
 Identities = 18/52 (34%), Positives = 23/52 (44%)

Query: 19  RAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKERKWQRKGKEMA 70
           RA T  G      +L SP+LF  PG   AL  P L   G  +    +G+  A
Sbjct: 60  RAETTPGAPRALSTLGSPSLFTTPGVPSALTTPGLTTPGTPKTLDLRGRAQA 111


>gi|193211608 dipeptidase 3 isoform a [Homo sapiens]
          Length = 513

 Score = 31.2 bits (69), Expect = 0.24
 Identities = 18/52 (34%), Positives = 23/52 (44%)

Query: 19  RAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKERKWQRKGKEMA 70
           RA T  G      +L SP+LF  PG   AL  P L   G  +    +G+  A
Sbjct: 60  RAETTPGAPRALSTLGSPSLFTTPGVPSALTTPGLTTPGTPKTLDLRGRAQA 111


>gi|169790825 odz, odd Oz/ten-m homolog 4 [Homo sapiens]
          Length = 2769

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 71  DRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALY 117
           D  W G +  +++C    C G  + +GGT     G   AACD  A +
Sbjct: 716 DPSWTGHDCSIEICAA-DCGGHGVCVGGTCRCEDGWMGAACDQRACH 761


>gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens]
          Length = 694

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 3   AGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKERKW 62
           AGS G G   R +R+   P  A   G  + L SP+        HAL  P+L  QG++  W
Sbjct: 561 AGSVGMGVARRTQRQFPMPPRALPPG-RMGLLSPSGIGGVSPRHALTSPSLGGQGRQNLW 619


>gi|42476169 Paf1, RNA polymerase II associated factor, homolog
           [Homo sapiens]
          Length = 531

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 3   AGSQGGGQRTRARRRARAPTDAG 25
           +GS GGGQR+R+  R+ +P  +G
Sbjct: 484 SGSNGGGQRSRSHSRSASPFPSG 506


>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 4   GSQGGGQRTRARRRARAPTDAGGLG 28
           G  GG +  RA RR RAP  AGG G
Sbjct: 236 GEAGGERPARALRRPRAPGRAGGGG 260


>gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo
           sapiens]
          Length = 189

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 2   RAGSQGGGQRTRARRRARAPTDAGGLGYSLS 32
           R G++GGGQR ++R  ARAP      G S S
Sbjct: 72  RGGARGGGQR-KSRSGARAPGQPAEAGLSAS 101


>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 4   GSQGGGQRTRARRRARAPTDAGGLG 28
           G  GG +  RA RR RAP  AGG G
Sbjct: 241 GEAGGERPARALRRPRAPGRAGGGG 265


>gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo
           sapiens]
          Length = 189

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 2   RAGSQGGGQRTRARRRARAPTDAGGLGYSLS 32
           R G++GGGQR ++R  ARAP      G S S
Sbjct: 72  RGGARGGGQR-KSRSGARAPGQPAEAGLSAS 101


>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 4   GSQGGGQRTRARRRARAPTDAGGLG 28
           G  GG +  RA RR RAP  AGG G
Sbjct: 241 GEAGGERPARALRRPRAPGRAGGGG 265


>gi|209862785 anoctamin 2 [Homo sapiens]
          Length = 998

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 5   SQGGGQRTRARRRARAPTDAGGLGYSLSLSS 35
           S GGG R+R+R  + AP+    LG  +S  S
Sbjct: 963 SPGGGDRSRSRAASSAPSGQSQLGSMMSSGS 993


>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 577

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 16/109 (14%)

Query: 17  RARAPTDAGG-----LGYSLSLSSPTLFLFPGCTHALVMPNLEQQG--KERKWQRKGKEM 69
           R   P  AGG     LG SL +    L L      A  +P+   +G    R+    G+ +
Sbjct: 400 RPEGPHGAGGCPMGELGMSLRVWGTLLPL----ERARSLPSWNSRGFCGARRGGGSGRFL 455

Query: 70  ADRKWQGRENPLQLCCLLACPGTTIQLGGTLLP-PCGTPAAACDSYALY 117
               W+G    L++CC  A PG   Q  G+L P P G+   A  +  L+
Sbjct: 456 PGGGWRGARTKLRVCCTPA-PG---QSRGSLAPRPTGSAGRALAAARLF 500


>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
          Length = 1441

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 23  DAGGLGYSLSLSSPTLFLFPG-------CTHALVMPNLEQQGKERKWQRKGKEMADRK 73
           D+   GY  +   P L + P        C H L+   LE+Q ++     K KE A+R+
Sbjct: 910 DSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLEEQLQDLDVALKKKERAERR 967


>gi|221136993 thioredoxin domain containing 14 isoform 2 [Homo
           sapiens]
          Length = 258

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 31  LSLSSPTLFLFPGCTHALVMPNLEQQGKERKW 62
           L+   PTL LF G   A+  P ++++G+   W
Sbjct: 175 LTKQLPTLILFQGGKEAMRRPQIDKKGRAVSW 206


>gi|7705726 thioredoxin domain containing 14 isoform 1 [Homo
           sapiens]
          Length = 296

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 31  LSLSSPTLFLFPGCTHALVMPNLEQQGKERKW 62
           L+   PTL LF G   A+  P ++++G+   W
Sbjct: 213 LTKQLPTLILFQGGKEAMRRPQIDKKGRAVSW 244


>gi|239754173 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 4   GSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFL---FPGCTHALVMPNLEQQGKER 60
           G  G     R R RAR    A  L  SL+ S P+  L       +H  ++PN++    ++
Sbjct: 92  GETGASASLRVRVRARQSRGASSLCLSLTWSEPSWTLRAPLLKISHPNLLPNIQSAAIQQ 151

Query: 61  K 61
           K
Sbjct: 152 K 152


>gi|239748693 PREDICTED: hypothetical protein XP_002346765 [Homo
           sapiens]
          Length = 170

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 4   GSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFL---FPGCTHALVMPNLEQQGKER 60
           G  G     R R RAR    A  L  SL+ S P+  L       +H  ++PN++    ++
Sbjct: 92  GETGASASLRVRVRARQSRGASSLCLSLTWSEPSWTLRAPLLKISHPNLLPNIQSAAIQQ 151

Query: 61  K 61
           K
Sbjct: 152 K 152


>gi|239742716 PREDICTED: hypothetical protein XP_002342633 [Homo
           sapiens]
          Length = 170

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 4   GSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFL---FPGCTHALVMPNLEQQGKER 60
           G  G     R R RAR    A  L  SL+ S P+  L       +H  ++PN++    ++
Sbjct: 92  GETGASASLRVRVRARQSRGASSLCLSLTWSEPSWTLRAPLLKISHPNLLPNIQSAAIQQ 151

Query: 61  K 61
           K
Sbjct: 152 K 152


>gi|93277096 limbin [Homo sapiens]
          Length = 1308

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 47  ALVMPNLEQQGKERKWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLL 101
           A+  P L+QQ K RK + K K   +   +  E+ + LC   A      ++ G LL
Sbjct: 895 AVAAPELQQQSKVRKSRSKSKSKGELLKKCIEDKIHLCEEQASEDLVEKVRGELL 949


>gi|71051602 family with sequence similarity 108, member B1 isoform
           2 [Homo sapiens]
          Length = 288

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 82  QLCCLLACPGTTIQLGGTL--LPPCGTPAAACD 112
           +LCCL  CP    ++   L  LPP  T    CD
Sbjct: 8   ELCCLFCCPPCPGKIASKLAFLPPDPTYTLMCD 40


>gi|71051600 family with sequence similarity 108, member B1 isoform
           1 [Homo sapiens]
          Length = 293

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 82  QLCCLLACPGTTIQLGGTL--LPPCGTPAAACD 112
           +LCCL  CP    ++   L  LPP  T    CD
Sbjct: 8   ELCCLFCCPPCPGKIASKLAFLPPDPTYTLMCD 40


>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
          Length = 808

 Score = 26.2 bits (56), Expect = 7.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 54  EQQGKERKWQRKGKEMADRKWQGRENPLQ 82
           E+Q KER+ Q K ++  ++K QGR+  L+
Sbjct: 754 EKQEKEREKQEKERQKQEKKAQGRKLSLR 782


>gi|20070321 nicotinamide mononucleotide adenylyltransferase 1 [Homo
           sapiens]
          Length = 279

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 44  CTHALVMPNLEQQGKERKW 62
           C H    P LE+ G++RKW
Sbjct: 111 CDHQQNSPTLERPGRKRKW 129


>gi|17136078 VGF nerve growth factor inducible precursor [Homo
           sapiens]
          Length = 615

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 45  THALVMPNLEQQGKERKWQRKGKEMADR 72
           TH L   NLE  G ER W+    E   R
Sbjct: 189 THTLTRVNLESPGPERVWRASWGEFQAR 216


>gi|38371744 keratin associated protein 12-4 [Homo sapiens]
          Length = 112

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 85  CLLACPGTTIQLGGTLLPPCGTPAAACDS 113
           C +ACPG+   +  T  PP G   + C S
Sbjct: 10  CPMACPGSPCCVPSTCYPPEGYGTSCCCS 38


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,072,207
Number of Sequences: 37866
Number of extensions: 288404
Number of successful extensions: 865
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 28
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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