BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239746671 PREDICTED: hypothetical protein XP_002343829 [Homo sapiens] (129 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239757650 PREDICTED: hypothetical protein [Homo sapiens] 276 3e-75 gi|239752141 PREDICTED: hypothetical protein XP_002348152 [Homo ... 276 3e-75 gi|239746671 PREDICTED: hypothetical protein XP_002343829 [Homo ... 276 3e-75 gi|193211610 dipeptidase 3 isoform b [Homo sapiens] 31 0.24 gi|193211608 dipeptidase 3 isoform a [Homo sapiens] 31 0.24 gi|169790825 odz, odd Oz/ten-m homolog 4 [Homo sapiens] 29 1.2 gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens] 28 1.5 gi|42476169 Paf1, RNA polymerase II associated factor, homolog [... 28 1.5 gi|169213067 PREDICTED: hypothetical protein [Homo sapiens] 28 2.6 gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo ... 28 2.6 gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 28 2.6 gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo ... 28 2.6 gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 28 2.6 gi|209862785 anoctamin 2 [Homo sapiens] 27 3.4 gi|239755873 PREDICTED: hypothetical protein [Homo sapiens] 27 3.4 gi|38788333 remodeling and spacing factor 1 [Homo sapiens] 27 4.5 gi|221136993 thioredoxin domain containing 14 isoform 2 [Homo sa... 27 4.5 gi|7705726 thioredoxin domain containing 14 isoform 1 [Homo sapi... 27 4.5 gi|239754173 PREDICTED: hypothetical protein [Homo sapiens] 27 5.8 gi|239748693 PREDICTED: hypothetical protein XP_002346765 [Homo ... 27 5.8 gi|239742716 PREDICTED: hypothetical protein XP_002342633 [Homo ... 27 5.8 gi|93277096 limbin [Homo sapiens] 27 5.8 gi|71051602 family with sequence similarity 108, member B1 isofo... 27 5.8 gi|71051600 family with sequence similarity 108, member B1 isofo... 27 5.8 gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 26 7.6 gi|20070321 nicotinamide mononucleotide adenylyltransferase 1 [H... 26 9.9 gi|17136078 VGF nerve growth factor inducible precursor [Homo sa... 26 9.9 gi|38371744 keratin associated protein 12-4 [Homo sapiens] 26 9.9 >gi|239757650 PREDICTED: hypothetical protein [Homo sapiens] Length = 129 Score = 276 bits (706), Expect = 3e-75 Identities = 129/129 (100%), Positives = 129/129 (100%) Query: 1 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER Sbjct: 1 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60 Query: 61 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS Sbjct: 61 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120 Query: 121 NINQHFGEI 129 NINQHFGEI Sbjct: 121 NINQHFGEI 129 >gi|239752141 PREDICTED: hypothetical protein XP_002348152 [Homo sapiens] Length = 129 Score = 276 bits (706), Expect = 3e-75 Identities = 129/129 (100%), Positives = 129/129 (100%) Query: 1 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER Sbjct: 1 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60 Query: 61 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS Sbjct: 61 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120 Query: 121 NINQHFGEI 129 NINQHFGEI Sbjct: 121 NINQHFGEI 129 >gi|239746671 PREDICTED: hypothetical protein XP_002343829 [Homo sapiens] Length = 129 Score = 276 bits (706), Expect = 3e-75 Identities = 129/129 (100%), Positives = 129/129 (100%) Query: 1 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER Sbjct: 1 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60 Query: 61 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS Sbjct: 61 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120 Query: 121 NINQHFGEI 129 NINQHFGEI Sbjct: 121 NINQHFGEI 129 >gi|193211610 dipeptidase 3 isoform b [Homo sapiens] Length = 512 Score = 31.2 bits (69), Expect = 0.24 Identities = 18/52 (34%), Positives = 23/52 (44%) Query: 19 RAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKERKWQRKGKEMA 70 RA T G +L SP+LF PG AL P L G + +G+ A Sbjct: 60 RAETTPGAPRALSTLGSPSLFTTPGVPSALTTPGLTTPGTPKTLDLRGRAQA 111 >gi|193211608 dipeptidase 3 isoform a [Homo sapiens] Length = 513 Score = 31.2 bits (69), Expect = 0.24 Identities = 18/52 (34%), Positives = 23/52 (44%) Query: 19 RAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKERKWQRKGKEMA 70 RA T G +L SP+LF PG AL P L G + +G+ A Sbjct: 60 RAETTPGAPRALSTLGSPSLFTTPGVPSALTTPGLTTPGTPKTLDLRGRAQA 111 >gi|169790825 odz, odd Oz/ten-m homolog 4 [Homo sapiens] Length = 2769 Score = 28.9 bits (63), Expect = 1.2 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 71 DRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALY 117 D W G + +++C C G + +GGT G AACD A + Sbjct: 716 DPSWTGHDCSIEICAA-DCGGHGVCVGGTCRCEDGWMGAACDQRACH 761 >gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens] Length = 694 Score = 28.5 bits (62), Expect = 1.5 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 3 AGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKERKW 62 AGS G G R +R+ P A G + L SP+ HAL P+L QG++ W Sbjct: 561 AGSVGMGVARRTQRQFPMPPRALPPG-RMGLLSPSGIGGVSPRHALTSPSLGGQGRQNLW 619 >gi|42476169 Paf1, RNA polymerase II associated factor, homolog [Homo sapiens] Length = 531 Score = 28.5 bits (62), Expect = 1.5 Identities = 11/23 (47%), Positives = 17/23 (73%) Query: 3 AGSQGGGQRTRARRRARAPTDAG 25 +GS GGGQR+R+ R+ +P +G Sbjct: 484 SGSNGGGQRSRSHSRSASPFPSG 506 >gi|169213067 PREDICTED: hypothetical protein [Homo sapiens] Length = 303 Score = 27.7 bits (60), Expect = 2.6 Identities = 14/25 (56%), Positives = 15/25 (60%) Query: 4 GSQGGGQRTRARRRARAPTDAGGLG 28 G GG + RA RR RAP AGG G Sbjct: 236 GEAGGERPARALRRPRAPGRAGGGG 260 >gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo sapiens] Length = 189 Score = 27.7 bits (60), Expect = 2.6 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 2 RAGSQGGGQRTRARRRARAPTDAGGLGYSLS 32 R G++GGGQR ++R ARAP G S S Sbjct: 72 RGGARGGGQR-KSRSGARAPGQPAEAGLSAS 101 >gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] Length = 308 Score = 27.7 bits (60), Expect = 2.6 Identities = 14/25 (56%), Positives = 15/25 (60%) Query: 4 GSQGGGQRTRARRRARAPTDAGGLG 28 G GG + RA RR RAP AGG G Sbjct: 241 GEAGGERPARALRRPRAPGRAGGGG 265 >gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo sapiens] Length = 189 Score = 27.7 bits (60), Expect = 2.6 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 2 RAGSQGGGQRTRARRRARAPTDAGGLGYSLS 32 R G++GGGQR ++R ARAP G S S Sbjct: 72 RGGARGGGQR-KSRSGARAPGQPAEAGLSAS 101 >gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] Length = 308 Score = 27.7 bits (60), Expect = 2.6 Identities = 14/25 (56%), Positives = 15/25 (60%) Query: 4 GSQGGGQRTRARRRARAPTDAGGLG 28 G GG + RA RR RAP AGG G Sbjct: 241 GEAGGERPARALRRPRAPGRAGGGG 265 >gi|209862785 anoctamin 2 [Homo sapiens] Length = 998 Score = 27.3 bits (59), Expect = 3.4 Identities = 13/31 (41%), Positives = 18/31 (58%) Query: 5 SQGGGQRTRARRRARAPTDAGGLGYSLSLSS 35 S GGG R+R+R + AP+ LG +S S Sbjct: 963 SPGGGDRSRSRAASSAPSGQSQLGSMMSSGS 993 >gi|239755873 PREDICTED: hypothetical protein [Homo sapiens] Length = 577 Score = 27.3 bits (59), Expect = 3.4 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 16/109 (14%) Query: 17 RARAPTDAGG-----LGYSLSLSSPTLFLFPGCTHALVMPNLEQQG--KERKWQRKGKEM 69 R P AGG LG SL + L L A +P+ +G R+ G+ + Sbjct: 400 RPEGPHGAGGCPMGELGMSLRVWGTLLPL----ERARSLPSWNSRGFCGARRGGGSGRFL 455 Query: 70 ADRKWQGRENPLQLCCLLACPGTTIQLGGTLLP-PCGTPAAACDSYALY 117 W+G L++CC A PG Q G+L P P G+ A + L+ Sbjct: 456 PGGGWRGARTKLRVCCTPA-PG---QSRGSLAPRPTGSAGRALAAARLF 500 >gi|38788333 remodeling and spacing factor 1 [Homo sapiens] Length = 1441 Score = 26.9 bits (58), Expect = 4.5 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 23 DAGGLGYSLSLSSPTLFLFPG-------CTHALVMPNLEQQGKERKWQRKGKEMADRK 73 D+ GY + P L + P C H L+ LE+Q ++ K KE A+R+ Sbjct: 910 DSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLEEQLQDLDVALKKKERAERR 967 >gi|221136993 thioredoxin domain containing 14 isoform 2 [Homo sapiens] Length = 258 Score = 26.9 bits (58), Expect = 4.5 Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 31 LSLSSPTLFLFPGCTHALVMPNLEQQGKERKW 62 L+ PTL LF G A+ P ++++G+ W Sbjct: 175 LTKQLPTLILFQGGKEAMRRPQIDKKGRAVSW 206 >gi|7705726 thioredoxin domain containing 14 isoform 1 [Homo sapiens] Length = 296 Score = 26.9 bits (58), Expect = 4.5 Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 31 LSLSSPTLFLFPGCTHALVMPNLEQQGKERKW 62 L+ PTL LF G A+ P ++++G+ W Sbjct: 213 LTKQLPTLILFQGGKEAMRRPQIDKKGRAVSW 244 >gi|239754173 PREDICTED: hypothetical protein [Homo sapiens] Length = 170 Score = 26.6 bits (57), Expect = 5.8 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 4 GSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFL---FPGCTHALVMPNLEQQGKER 60 G G R R RAR A L SL+ S P+ L +H ++PN++ ++ Sbjct: 92 GETGASASLRVRVRARQSRGASSLCLSLTWSEPSWTLRAPLLKISHPNLLPNIQSAAIQQ 151 Query: 61 K 61 K Sbjct: 152 K 152 >gi|239748693 PREDICTED: hypothetical protein XP_002346765 [Homo sapiens] Length = 170 Score = 26.6 bits (57), Expect = 5.8 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 4 GSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFL---FPGCTHALVMPNLEQQGKER 60 G G R R RAR A L SL+ S P+ L +H ++PN++ ++ Sbjct: 92 GETGASASLRVRVRARQSRGASSLCLSLTWSEPSWTLRAPLLKISHPNLLPNIQSAAIQQ 151 Query: 61 K 61 K Sbjct: 152 K 152 >gi|239742716 PREDICTED: hypothetical protein XP_002342633 [Homo sapiens] Length = 170 Score = 26.6 bits (57), Expect = 5.8 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 4 GSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFL---FPGCTHALVMPNLEQQGKER 60 G G R R RAR A L SL+ S P+ L +H ++PN++ ++ Sbjct: 92 GETGASASLRVRVRARQSRGASSLCLSLTWSEPSWTLRAPLLKISHPNLLPNIQSAAIQQ 151 Query: 61 K 61 K Sbjct: 152 K 152 >gi|93277096 limbin [Homo sapiens] Length = 1308 Score = 26.6 bits (57), Expect = 5.8 Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 47 ALVMPNLEQQGKERKWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLL 101 A+ P L+QQ K RK + K K + + E+ + LC A ++ G LL Sbjct: 895 AVAAPELQQQSKVRKSRSKSKSKGELLKKCIEDKIHLCEEQASEDLVEKVRGELL 949 >gi|71051602 family with sequence similarity 108, member B1 isoform 2 [Homo sapiens] Length = 288 Score = 26.6 bits (57), Expect = 5.8 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Query: 82 QLCCLLACPGTTIQLGGTL--LPPCGTPAAACD 112 +LCCL CP ++ L LPP T CD Sbjct: 8 ELCCLFCCPPCPGKIASKLAFLPPDPTYTLMCD 40 >gi|71051600 family with sequence similarity 108, member B1 isoform 1 [Homo sapiens] Length = 293 Score = 26.6 bits (57), Expect = 5.8 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Query: 82 QLCCLLACPGTTIQLGGTL--LPPCGTPAAACD 112 +LCCL CP ++ L LPP T CD Sbjct: 8 ELCCLFCCPPCPGKIASKLAFLPPDPTYTLMCD 40 >gi|167614488 TBC1 domain family, member 10B [Homo sapiens] Length = 808 Score = 26.2 bits (56), Expect = 7.6 Identities = 12/29 (41%), Positives = 20/29 (68%) Query: 54 EQQGKERKWQRKGKEMADRKWQGRENPLQ 82 E+Q KER+ Q K ++ ++K QGR+ L+ Sbjct: 754 EKQEKEREKQEKERQKQEKKAQGRKLSLR 782 >gi|20070321 nicotinamide mononucleotide adenylyltransferase 1 [Homo sapiens] Length = 279 Score = 25.8 bits (55), Expect = 9.9 Identities = 9/19 (47%), Positives = 12/19 (63%) Query: 44 CTHALVMPNLEQQGKERKW 62 C H P LE+ G++RKW Sbjct: 111 CDHQQNSPTLERPGRKRKW 129 >gi|17136078 VGF nerve growth factor inducible precursor [Homo sapiens] Length = 615 Score = 25.8 bits (55), Expect = 9.9 Identities = 12/28 (42%), Positives = 13/28 (46%) Query: 45 THALVMPNLEQQGKERKWQRKGKEMADR 72 TH L NLE G ER W+ E R Sbjct: 189 THTLTRVNLESPGPERVWRASWGEFQAR 216 >gi|38371744 keratin associated protein 12-4 [Homo sapiens] Length = 112 Score = 25.8 bits (55), Expect = 9.9 Identities = 11/29 (37%), Positives = 15/29 (51%) Query: 85 CLLACPGTTIQLGGTLLPPCGTPAAACDS 113 C +ACPG+ + T PP G + C S Sbjct: 10 CPMACPGSPCCVPSTCYPPEGYGTSCCCS 38 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.321 0.137 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,072,207 Number of Sequences: 37866 Number of extensions: 288404 Number of successful extensions: 865 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 848 Number of HSP's gapped (non-prelim): 28 length of query: 129 length of database: 18,247,518 effective HSP length: 90 effective length of query: 39 effective length of database: 14,839,578 effective search space: 578743542 effective search space used: 578743542 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.