Search of human proteins with 239746294

Search of human proteins with 239746294

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746294 PREDICTED: hypothetical protein XP_002343725 [Homo
sapiens]
         (260 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239751803 PREDICTED: hypothetical protein XP_002348005 [Homo ...   541   e-154
gi|239746294 PREDICTED: hypothetical protein XP_002343725 [Homo ...   541   e-154
gi|239757298 PREDICTED: hypothetical protein [Homo sapiens]           295   4e-80
gi|239749627 PREDICTED: hypothetical protein XP_002347107 [Homo ...    38   0.008
gi|239743902 PREDICTED: hypothetical protein XP_002342970 [Homo ...    38   0.008
gi|239755146 PREDICTED: hypothetical protein [Homo sapiens]            35   0.066
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re...    33   0.19 
gi|237512940 early growth response 4 [Homo sapiens]                    33   0.25 
gi|40538736 RAN binding protein 10 [Homo sapiens]                      33   0.33 
gi|38683860 insulin receptor substrate 2 [Homo sapiens]                32   0.42 
gi|239756943 PREDICTED: hypothetical protein [Homo sapiens]            30   1.6  
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]           30   1.6  
gi|239751443 PREDICTED: hypothetical protein [Homo sapiens]            30   1.6  
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]           30   1.6  
gi|239745948 PREDICTED: hypothetical protein XP_002343622 [Homo ...    30   1.6  
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]           30   1.6  
gi|28559039 mediator complex subunit 1 [Homo sapiens]                  30   1.6  
gi|39812378 RAN binding protein 9 [Homo sapiens]                       30   2.1  
gi|239756272 PREDICTED: hypothetical protein XP_002344878 [Homo ...    30   2.1  
gi|239750813 PREDICTED: hypothetical protein XP_002347569 [Homo ...    30   2.1  
gi|239745173 PREDICTED: hypothetical protein XP_002343380 [Homo ...    30   2.1  
gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]               30   2.1  
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]            30   2.8  
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]            30   2.8  
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]      30   2.8  
gi|61835172 fragile X mental retardation-related protein 1 isofo...    29   3.6  
gi|61835164 fragile X mental retardation-related protein 1 isofo...    29   3.6  
gi|61835148 fragile X mental retardation-related protein 1 isofo...    29   3.6  
gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]        29   4.7  
gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens]        29   4.7  

>gi|239751803 PREDICTED: hypothetical protein XP_002348005 [Homo
           sapiens]
          Length = 260

 Score =  541 bits (1394), Expect = e-154
 Identities = 260/260 (100%), Positives = 260/260 (100%)

Query: 1   MGTTPGRRWLGAHQHPWTRKDTADEDPVSQTDLFPLLAAALLRGRLLLQQLPQLLLLPGH 60
           MGTTPGRRWLGAHQHPWTRKDTADEDPVSQTDLFPLLAAALLRGRLLLQQLPQLLLLPGH
Sbjct: 1   MGTTPGRRWLGAHQHPWTRKDTADEDPVSQTDLFPLLAAALLRGRLLLQQLPQLLLLPGH 60

Query: 61  TSQCLQLLSLQAPRRPSHPFPRRGGCGRCGRHSYRRRSLGLKLRGAWLSGDASPPAITNP 120
           TSQCLQLLSLQAPRRPSHPFPRRGGCGRCGRHSYRRRSLGLKLRGAWLSGDASPPAITNP
Sbjct: 61  TSQCLQLLSLQAPRRPSHPFPRRGGCGRCGRHSYRRRSLGLKLRGAWLSGDASPPAITNP 120

Query: 121 PRCRPRAPHRVAAALSAAAFSHFFFLCLLLSSPAARRFRQDFGCLLFPGLLGMALGLDLH 180
           PRCRPRAPHRVAAALSAAAFSHFFFLCLLLSSPAARRFRQDFGCLLFPGLLGMALGLDLH
Sbjct: 121 PRCRPRAPHRVAAALSAAAFSHFFFLCLLLSSPAARRFRQDFGCLLFPGLLGMALGLDLH 180

Query: 181 VAFRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAP 240
           VAFRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAP
Sbjct: 181 VAFRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAP 240

Query: 241 SRAQASARSALRAGHGRFCL 260
           SRAQASARSALRAGHGRFCL
Sbjct: 241 SRAQASARSALRAGHGRFCL 260


>gi|239746294 PREDICTED: hypothetical protein XP_002343725 [Homo
           sapiens]
          Length = 260

 Score =  541 bits (1394), Expect = e-154
 Identities = 260/260 (100%), Positives = 260/260 (100%)

Query: 1   MGTTPGRRWLGAHQHPWTRKDTADEDPVSQTDLFPLLAAALLRGRLLLQQLPQLLLLPGH 60
           MGTTPGRRWLGAHQHPWTRKDTADEDPVSQTDLFPLLAAALLRGRLLLQQLPQLLLLPGH
Sbjct: 1   MGTTPGRRWLGAHQHPWTRKDTADEDPVSQTDLFPLLAAALLRGRLLLQQLPQLLLLPGH 60

Query: 61  TSQCLQLLSLQAPRRPSHPFPRRGGCGRCGRHSYRRRSLGLKLRGAWLSGDASPPAITNP 120
           TSQCLQLLSLQAPRRPSHPFPRRGGCGRCGRHSYRRRSLGLKLRGAWLSGDASPPAITNP
Sbjct: 61  TSQCLQLLSLQAPRRPSHPFPRRGGCGRCGRHSYRRRSLGLKLRGAWLSGDASPPAITNP 120

Query: 121 PRCRPRAPHRVAAALSAAAFSHFFFLCLLLSSPAARRFRQDFGCLLFPGLLGMALGLDLH 180
           PRCRPRAPHRVAAALSAAAFSHFFFLCLLLSSPAARRFRQDFGCLLFPGLLGMALGLDLH
Sbjct: 121 PRCRPRAPHRVAAALSAAAFSHFFFLCLLLSSPAARRFRQDFGCLLFPGLLGMALGLDLH 180

Query: 181 VAFRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAP 240
           VAFRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAP
Sbjct: 181 VAFRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAP 240

Query: 241 SRAQASARSALRAGHGRFCL 260
           SRAQASARSALRAGHGRFCL
Sbjct: 241 SRAQASARSALRAGHGRFCL 260


>gi|239757298 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 183

 Score =  295 bits (754), Expect = 4e-80
 Identities = 144/153 (94%), Positives = 146/153 (95%)

Query: 108 LSGDASPPAITNPPRCRPRAPHRVAAALSAAAFSHFFFLCLLLSSPAARRFRQDFGCLLF 167
           LS   +P +   PPRCRPRAPHRVAAALSAAAFSHFFFLCLLLSSPAARRFRQDFGCLLF
Sbjct: 31  LSLHLTPVSQIRPPRCRPRAPHRVAAALSAAAFSHFFFLCLLLSSPAARRFRQDFGCLLF 90

Query: 168 PGLLGMALGLDLHVAFRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEI 227
           PGLLGMALGLDLHVAFRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEI
Sbjct: 91  PGLLGMALGLDLHVAFRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEI 150

Query: 228 PKSNCHLPTASAPSRAQASARSALRAGHGRFCL 260
           PKSNCHLPTASAPSRAQASARSALRAGHGRFCL
Sbjct: 151 PKSNCHLPTASAPSRAQASARSALRAGHGRFCL 183


>gi|239749627 PREDICTED: hypothetical protein XP_002347107 [Homo
           sapiens]
          Length = 115

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 183 FRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAPSR 242
           +RD+R   P   +A R  GRW S GG R RG   L+    G+ E    +  +    AP R
Sbjct: 44  YRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRE---RSPRVTLGEAPPR 100

Query: 243 AQASARSAL 251
           A A + S+L
Sbjct: 101 AAAWSPSSL 109


>gi|239743902 PREDICTED: hypothetical protein XP_002342970 [Homo
           sapiens]
          Length = 115

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 183 FRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAPSR 242
           +RD+R   P   +A R  GRW S GG R RG   L+    G+ E    +  +    AP R
Sbjct: 44  YRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRE---RSPRVTLGEAPPR 100

Query: 243 AQASARSAL 251
           A A + S+L
Sbjct: 101 AAAWSPSSL 109


>gi|239755146 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 115

 Score = 35.0 bits (79), Expect = 0.066
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 183 FRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAPSR 242
           +RD+R   P   +A R  GRW S GG R RG   L+    G+ E    +  +    A  R
Sbjct: 44  YRDRRSHSPPALSAPRRSGRWPSLGGLRERGRRRLDWRASGLRE---RSPRVTLGEASPR 100

Query: 243 AQASARSAL 251
           A A + S+L
Sbjct: 101 AAAWSPSSL 109


>gi|38569493 potassium voltage-gated channel, subfamily H
           (eag-related), member 3 [Homo sapiens]
          Length = 1083

 Score = 33.5 bits (75), Expect = 0.19
 Identities = 29/73 (39%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 55  LLLPGHTSQCLQLLSLQAPRRPSHPFPRRGGCGRCGRHSYRRRSLGLKLRGAWLSGDASP 114
           LL PG TS       L +PRR + P PR GG GR GR    +   G       L G   P
Sbjct: 753 LLSPGCTSSS-SAAKLLSPRRTA-PRPRLGGRGRPGRAGALKAEAGPSAPPRALEGLRLP 810

Query: 115 PAITN-PPRCRPR 126
           P   N PP   PR
Sbjct: 811 PMPWNVPPDLSPR 823


>gi|237512940 early growth response 4 [Homo sapiens]
          Length = 589

 Score = 33.1 bits (74), Expect = 0.25
 Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 71  QAPRRPSHPFPRRGGCGRCGRHSYRRRSLGLKLRGAWLSGDASPPAITNPPRCRPRAPH- 129
           +APR P   FPR G C + G  + R    G  L  A     + PPA     R RPRAPH 
Sbjct: 47  RAPRLPDS-FPR-GECPKPGARAPRSVRCGEPLPPA-----SPPPARPQAQRARPRAPHS 99

Query: 130 RVAAALSAAAFS 141
           R  A L  + FS
Sbjct: 100 RRRAMLHLSEFS 111


>gi|40538736 RAN binding protein 10 [Homo sapiens]
          Length = 620

 Score = 32.7 bits (73), Expect = 0.33
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 12  AHQHPWTRKDTADEDPVSQTDLFPLLAAALLRGRLLLQQLPQLLLLPGHTSQCLQLLS 69
           A+  PW+       DP+ +  +   L +A+L  + L +Q P +L L G  S+CL+L++
Sbjct: 547 AYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLAL-GQASECLRLMA 603


>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
          Length = 1338

 Score = 32.3 bits (72), Expect = 0.42
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 190 GPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGVGVLEIPKSNCHLPTASAPSRAQASARS 249
           GP+    SR H     CGG   RGS     P  G L+  +S   +P A +P  A +    
Sbjct: 393 GPVRAPLSRSHTLSGGCGG---RGSKVALLPAGGALQHSRS-MSMPVAHSPPAATSPGSL 448

Query: 250 ALRAGHG 256
           +  +GHG
Sbjct: 449 SSSSGHG 455


>gi|239756943 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 783

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 86  CGRCGRHSYRRRSLGLKLRGAWLSGDA--SPPAITNPPRCRPRA--PHRVAAA 134
           CGR   H++    LGL+ RG W  G A  +P  +    R R RA  P RV+ A
Sbjct: 655 CGRAHTHAHSLSGLGLR-RGNWCEGAALRTPHRVFQRARLRTRAGLPWRVSLA 706


>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
          Length = 346

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 52/161 (32%), Positives = 61/161 (37%), Gaps = 32/161 (19%)

Query: 114 PPAITNPP--RCRPRAPHRVAAALSAAAFSHFFFLCLLLSSPAARRFRQDFGCLLFPGLL 171
           PP    PP  RC P A  R A  L  AA +        L +PAAR           PG L
Sbjct: 167 PPPRPAPPGTRCCPGA--RAAQLLREAAAA-----AQGLRAPAARLPEPTRRAPGRPGCL 219

Query: 172 GMALGLDLHVAFRDQRRRGPLLGAAS--------------RPHGRWDS-CGGSRSRGSPS 216
             A        +R +R   P     S              RP  R +S C G  SRG+P+
Sbjct: 220 PTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPA 279

Query: 217 LNKPGVGVLEIPKSNCHLPTASAPSRAQASARSALRAGHGR 257
           L  P +     P   C    A + SRA A AR AL A  GR
Sbjct: 280 LAPPKLS----PPFPC---LAQSASRA-AGARRALSASRGR 312


>gi|239751443 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 783

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 86  CGRCGRHSYRRRSLGLKLRGAWLSGDA--SPPAITNPPRCRPRA--PHRVAAA 134
           CGR   H++    LGL+ RG W  G A  +P  +    R R RA  P RV+ A
Sbjct: 655 CGRAHTHAHSLSGLGLR-RGNWCEGAALRTPHRVFQRARLRTRAGLPWRVSLA 706


>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
          Length = 346

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 52/161 (32%), Positives = 61/161 (37%), Gaps = 32/161 (19%)

Query: 114 PPAITNPP--RCRPRAPHRVAAALSAAAFSHFFFLCLLLSSPAARRFRQDFGCLLFPGLL 171
           PP    PP  RC P A  R A  L  AA +        L +PAAR           PG L
Sbjct: 167 PPPRPAPPGTRCCPGA--RAAQLLREAAAA-----AQGLRAPAARLPEPTRRAPGRPGCL 219

Query: 172 GMALGLDLHVAFRDQRRRGPLLGAAS--------------RPHGRWDS-CGGSRSRGSPS 216
             A        +R +R   P     S              RP  R +S C G  SRG+P+
Sbjct: 220 PTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPA 279

Query: 217 LNKPGVGVLEIPKSNCHLPTASAPSRAQASARSALRAGHGR 257
           L  P +     P   C    A + SRA A AR AL A  GR
Sbjct: 280 LAPPKLS----PPFPC---LAQSASRA-AGARRALSASRGR 312


>gi|239745948 PREDICTED: hypothetical protein XP_002343622 [Homo
           sapiens]
          Length = 791

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 86  CGRCGRHSYRRRSLGLKLRGAWLSGDA--SPPAITNPPRCRPRA--PHRVAAA 134
           CGR   H++    LGL+ RG W  G A  +P  +    R R RA  P RV+ A
Sbjct: 663 CGRAHTHAHSLSGLGLR-RGNWCEGAALRTPHRVFQRARLRTRAGLPWRVSLA 714


>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
          Length = 346

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 52/161 (32%), Positives = 61/161 (37%), Gaps = 32/161 (19%)

Query: 114 PPAITNPP--RCRPRAPHRVAAALSAAAFSHFFFLCLLLSSPAARRFRQDFGCLLFPGLL 171
           PP    PP  RC P A  R A  L  AA +        L +PAAR           PG L
Sbjct: 167 PPPRPAPPGTRCCPGA--RAAQLLREAAAA-----AQGLRAPAARLPEPTRRAPGRPGCL 219

Query: 172 GMALGLDLHVAFRDQRRRGPLLGAAS--------------RPHGRWDS-CGGSRSRGSPS 216
             A        +R +R   P     S              RP  R +S C G  SRG+P+
Sbjct: 220 PTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPA 279

Query: 217 LNKPGVGVLEIPKSNCHLPTASAPSRAQASARSALRAGHGR 257
           L  P +     P   C    A + SRA A AR AL A  GR
Sbjct: 280 LAPPKLS----PPFPC---LAQSASRA-AGARRALSASRGR 312


>gi|28559039 mediator complex subunit 1 [Homo sapiens]
          Length = 1581

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 185  DQRRRGPLLGAASRPHGRWDSCGGSRSRGSP--SLNKPGVGVLEIPKSNCHLP 235
            D   + P   +++RP     S GGS+S GS   S   PGV    IPK    +P
Sbjct: 1016 DTEGKSPSHSSSNRPFTPPTSTGGSKSPGSAGRSQTPPGVATPPIPKITIQIP 1068


>gi|39812378 RAN binding protein 9 [Homo sapiens]
          Length = 729

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 12  AHQHPWTRKDTADEDPVSQTDLFPLLAAALLRGRLLLQQLPQLLLLPGHTSQCLQLLS 69
           A+  PW        DP+ +  +   L +A+L    L +Q P L L  G  +QCL L++
Sbjct: 656 AYSDPWNSPVGNQLDPIQREPVCSALNSAILETHNLPKQ-PPLALAMGQATQCLGLMA 712


>gi|239756272 PREDICTED: hypothetical protein XP_002344878 [Homo
           sapiens]
          Length = 141

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 86  CGRCGRHSYRRRSLGLKLRGAWLSGDASPPA 116
           C R G  S RRR  G+ LRGA +SG    PA
Sbjct: 5   CHRMGCCSLRRRQSGVTLRGAVVSGGVRLPA 35


>gi|239750813 PREDICTED: hypothetical protein XP_002347569 [Homo
           sapiens]
          Length = 141

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 86  CGRCGRHSYRRRSLGLKLRGAWLSGDASPPA 116
           C R G  S RRR  G+ LRGA +SG    PA
Sbjct: 5   CHRMGCCSLRRRQSGVTLRGAVVSGGVRLPA 35


>gi|239745173 PREDICTED: hypothetical protein XP_002343380 [Homo
           sapiens]
          Length = 141

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 86  CGRCGRHSYRRRSLGLKLRGAWLSGDASPPA 116
           C R G  S RRR  G+ LRGA +SG    PA
Sbjct: 5   CHRMGCCSLRRRQSGVTLRGAVVSGGVRLPA 35


>gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]
          Length = 532

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 191 PLLGAASRPHGRWDSCGGSRSRGSPS---------LNKPGVGVLEIPKSNCHLPTASAPS 241
           P+ G A+      ++CGG  +  +P           + PG G +    S  H       S
Sbjct: 207 PVAGLAALKAHAKEACGGPSAMATPENLASLMKGMASSPGRGGISWQSSIVHYMNRMTQS 266

Query: 242 RAQASARSALRA 253
           +AQA++R AL+A
Sbjct: 267 QAQAASRLALKA 278


>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 57/220 (25%), Positives = 73/220 (33%), Gaps = 48/220 (21%)

Query: 72  APRRPSHPFPRRGGCGRCGRHSYRRRSLG--------LKLRGAWLSGDASPPAITNPPRC 123
           AP R   P  RRGGC    R   RR   G          L G   +G A    +  P   
Sbjct: 593 APARRECPARRRGGC--WPRRPRRRHGGGGGGGGPGLQDLLGGGHAGGAHGHVVVAPAAA 650

Query: 124 RPRAPHRVAAALSAAAFSHFFFLCLLLSSPAARRFRQDFGCLLFPGL---LGMALGLDLH 180
            P A         A    H   +C  +++ A      D   +L+ G+   LG   G    
Sbjct: 651 APTAREG-----RAGRHGHVAVVCPQVAAGAPVGADLDVSVVLWVGVVGHLGRGRGAGRA 705

Query: 181 VAFRDQRRRGPLLGA---------ASRPHGRWDSCGGSRSRGSPSLNKPGVGVL-EIPKS 230
            A R  R  GP  G            RP   W      R +G   L +P V VL  +P+ 
Sbjct: 706 EAARAAREGGPHQGVFIQRGRGGLGHRPLPGW------RGQGVGPLAQPSVQVLGRVPRD 759

Query: 231 -------------NCHLPTASAPSRAQASARSALRAGHGR 257
                        + H+P     + A  S R  LR G GR
Sbjct: 760 PAVGAATVAQGPVHGHVP-VELTAAAAVSGRGRLRDGLGR 798


>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 57/220 (25%), Positives = 73/220 (33%), Gaps = 48/220 (21%)

Query: 72  APRRPSHPFPRRGGCGRCGRHSYRRRSLG--------LKLRGAWLSGDASPPAITNPPRC 123
           AP R   P  RRGGC    R   RR   G          L G   +G A    +  P   
Sbjct: 593 APARRECPARRRGGC--WPRRPRRRHGGGGGGGGPGLQDLLGGGHAGGAHGHVVVAPAAA 650

Query: 124 RPRAPHRVAAALSAAAFSHFFFLCLLLSSPAARRFRQDFGCLLFPGL---LGMALGLDLH 180
            P A         A    H   +C  +++ A      D   +L+ G+   LG   G    
Sbjct: 651 APTAREG-----RAGRHGHVAVVCPQVAAGAPVGADLDVSVVLWVGVVGHLGRGRGAGRA 705

Query: 181 VAFRDQRRRGPLLGA---------ASRPHGRWDSCGGSRSRGSPSLNKPGVGVL-EIPKS 230
            A R  R  GP  G            RP   W      R +G   L +P V VL  +P+ 
Sbjct: 706 EAARAAREGGPHQGVFIQRGRGGLGHRPLPGW------RGQGVGPLAQPSVQVLGRVPRD 759

Query: 231 -------------NCHLPTASAPSRAQASARSALRAGHGR 257
                        + H+P     + A  S R  LR G GR
Sbjct: 760 PAVGAATVAQGPVHGHVP-VELTAAAAVSGRGRLRDGLGR 798


>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
          Length = 346

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 12/87 (13%)

Query: 65  LQLLSLQAPRRP-SHPFPRRGGCGRCGRHSYRRRSL-----------GLKLRGAWLSGDA 112
           L+LL L    RP + P PR G  G CG   +   S            G + R   L+GD 
Sbjct: 13  LKLLVLTGGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDK 72

Query: 113 SPPAITNPPRCRPRAPHRVAAALSAAA 139
            P A   PP   P  P     ALS ++
Sbjct: 73  EPRAGPLPPPAPPLPPPGALDALSLSS 99


>gi|61835172 fragile X mental retardation-related protein 1 isoform
           c [Homo sapiens]
          Length = 536

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 178 DLHVAFRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGV-GVLEIPKSN 231
           D  +A  D R       +  RP GR  S  G R RG P   K  +  VL+ P SN
Sbjct: 336 DWSLAGEDDRDSRHQRDSRRRPGGRGRSVSGGRGRGGPRGGKSSISSVLKDPDSN 390


>gi|61835164 fragile X mental retardation-related protein 1 isoform
           b [Homo sapiens]
          Length = 539

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 178 DLHVAFRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGV-GVLEIPKSN 231
           D  +A  D R       +  RP GR  S  G R RG P   K  +  VL+ P SN
Sbjct: 421 DWSLAGEDDRDSRHQRDSRRRPGGRGRSVSGGRGRGGPRGGKSSISSVLKDPDSN 475


>gi|61835148 fragile X mental retardation-related protein 1 isoform
           a [Homo sapiens]
          Length = 621

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 178 DLHVAFRDQRRRGPLLGAASRPHGRWDSCGGSRSRGSPSLNKPGV-GVLEIPKSN 231
           D  +A  D R       +  RP GR  S  G R RG P   K  +  VL+ P SN
Sbjct: 421 DWSLAGEDDRDSRHQRDSRRRPGGRGRSVSGGRGRGGPRGGKSSISSVLKDPDSN 475


>gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]
          Length = 1179

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 49  QQLPQLLLLPGHTSQCLQLLSLQAPRRPSHPFP------RRGGCGRCG 90
           QQLPQL        Q  Q    Q P+ P  PFP      RRGG G  G
Sbjct: 61  QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGG 108


>gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens]
          Length = 1192

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 49  QQLPQLLLLPGHTSQCLQLLSLQAPRRPSHPFP------RRGGCGRCG 90
           QQLPQL        Q  Q    Q P+ P  PFP      RRGG G  G
Sbjct: 61  QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGG 108


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.139    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,320,868
Number of Sequences: 37866
Number of extensions: 627461
Number of successful extensions: 2815
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2790
Number of HSP's gapped (non-prelim): 72
length of query: 260
length of database: 18,247,518
effective HSP length: 100
effective length of query: 160
effective length of database: 14,460,918
effective search space: 2313746880
effective search space used: 2313746880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.