Guide to the Human Genome
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Name: LOC100291458 Sequence: fasta or formatted (115aa) NCBI GI: 239749627
Description:

PREDICTED: hypothetical protein XP_002347107

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         14           3
 C cysteine            1.7          2           1
 D aspartate           1.7          2           1
 E glutamate           4.3          5           1
 F phenylalanine       1.7          2           1
 G glycine             7.8          9           2
 H histidine           2.6          3           1
 I isoleucine          0.0          0           0
 K lysine              1.7          2           2
 L leucine            10.4         12           1
 M methionine          0.9          1           1
 N asparagine          0.9          1           1
 P proline            11.3         13           3
 Q glutamine           1.7          2           1
 R arginine           20.0         23           3
 S serine             12.2         14           2
 T threonine           2.6          3           1
 V valine              1.7          2           1
 W tryptophan          2.6          3           1
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347107 
LOC100288099          1.000   PREDICTED: hypothetical protein XP_002342970 
LOC100293175          0.986   PREDICTED: hypothetical protein 
LOC100293956          0.060   PREDICTED: hypothetical protein 
LOC100289786          0.060   PREDICTED: hypothetical protein XP_002348005 
LOC100287012          0.060   PREDICTED: hypothetical protein XP_002343725 
LOC100291932          0.056   PREDICTED: hypothetical protein XP_002345595 
LOC100290844          0.056   PREDICTED: hypothetical protein XP_002348320 
LOC100287739          0.056   PREDICTED: hypothetical protein XP_002342280 
LOC643355             0.047   PREDICTED: hypothetical protein 
LOC643355             0.047   PREDICTED: hypothetical protein 
LOC643355             0.042   PREDICTED: hypothetical protein 
FLJ37078              0.042   hypothetical protein LOC222183 
LOC100290879          0.037   PREDICTED: hypothetical protein XP_002347499 
LOC100286940          0.037   PREDICTED: hypothetical protein XP_002343317 
TNFRSF18              0.037   tumor necrosis factor receptor superfamily, member 1...
ZNF318                0.033   zinc finger protein 318 
SRRM2                 0.033   splicing coactivator subunit SRm300 
SART1                 0.033   squamous cell carcinoma antigen recognized by T cell...
LOC100293818          0.028   PREDICTED: hypothetical protein 
WDR81                 0.028   PREDICTED: WD repeat domain 81 
LOC100289334          0.028   PREDICTED: hypothetical protein 
LOC729370             0.028   PREDICTED: hypothetical protein 
LOC100289334          0.028   PREDICTED: hypothetical protein XP_002342399 
LOC100170229          0.028   hypothetical protein LOC100170229 
LOC100134017          0.028   PREDICTED: hypothetical protein 
SCAF1                 0.028   SR-related CTD-associated factor 1 
CDC2L5                0.028   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.028   cell division cycle 2-like 5 isoform 2 
CEBPA                 0.023   CCAAT/enhancer binding protein alpha 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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