Guide to the Human Genome
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Name: LOC100289576 Sequence: fasta or formatted (791aa) NCBI GI: 239745948
Description:

PREDICTED: hypothetical protein XP_002343622

Not currently referenced in the text

Other entries for this name:
alt prot {783aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         83           3
 C cysteine            1.6         13           1
 D aspartate           4.4         35           3
 E glutamate           5.3         42           2
 F phenylalanine       1.4         11           1
 G glycine            13.8        109           3
 H histidine           5.8         46           2
 I isoleucine          1.6         13           1
 K lysine              1.8         14           1
 L leucine             9.7         77           3
 M methionine          0.9          7           2
 N asparagine          1.8         14           1
 P proline             9.1         72           2
 Q glutamine           6.3         50           4
 R arginine            7.2         57           2
 S serine              4.9         39           2
 T threonine           4.4         35           2
 V valine              6.4         51           3
 W tryptophan          2.1         17           1
 Y tyrosine            0.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343622 
LOC100292287          0.985   PREDICTED: hypothetical protein 
LOC100289576          0.985   PREDICTED: hypothetical protein 
RUSC1                 0.012   RUN and SH3 domain containing 1 isoform c 
RUSC1                 0.012   RUN and SH3 domain containing 1 isoform a 
RUSC1                 0.012   RUN and SH3 domain containing 1 isoform d 
RPGR                  0.012   retinitis pigmentosa GTPase regulator isoform C [Hom...
COL7A1                0.010   alpha 1 type VII collagen precursor 
CLIC6                 0.010   chloride intracellular channel 6 
RP1L1                 0.010   retinitis pigmentosa 1-like 1 
COL24A1               0.009   collagen, type XXIV, alpha 1 
COL6A6                0.009   collagen type VI alpha 6 
BSN                   0.009   bassoon protein 
COL27A1               0.009   collagen, type XXVII, alpha 1 
COL28A1               0.009   collagen, type XXVIII precursor 
ARHGEF5               0.009   rho guanine nucleotide exchange factor 5 
FMN2                  0.009   formin 2 
ARHGEF5L              0.009   Rho guanine nucleotide exchange factor (GEF) 5-like ...
COL21A1               0.009   collagen, type XXI, alpha 1 precursor 
LOC147646             0.008   PREDICTED: hypothetical protein 
LOC100134283          0.008   PREDICTED: hypothetical protein 
LOC147646             0.008   PREDICTED: hypothetical protein 
LOC147646             0.008   PREDICTED: hypothetical protein 
COL1A1                0.007   alpha 1 type I collagen preproprotein 
DLGAP3                0.007   discs, large (Drosophila) homolog-associated protei...
WDR33                 0.007   WD repeat domain 33 isoform 1 
AMPH                  0.007   amphiphysin isoform 1 
DMRTA2                0.007   DMRT-like family A2 
SSPO                  0.007   SCO-spondin 
FLG                   0.007   filaggrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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