Guide to the Human Genome
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Name: LOC100290996 Sequence: fasta or formatted (141aa) NCBI GI: 239750813
Description:

PREDICTED: hypothetical protein XP_002347569

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         13           2
 C cysteine            5.7          8           2
 D aspartate           0.7          1           1
 E glutamate           2.8          4           1
 F phenylalanine       1.4          2           1
 G glycine             5.7          8           2
 H histidine           5.0          7           3
 I isoleucine          0.7          1           1
 K lysine              1.4          2           1
 L leucine            16.3         23           2
 M methionine          1.4          2           1
 N asparagine          0.0          0           0
 P proline            13.5         19           2
 Q glutamine           4.3          6           2
 R arginine           12.1         17           3
 S serine              9.9         14           2
 T threonine           3.5          5           1
 V valine              5.0          7           2
 W tryptophan          1.4          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347569 
LOC100292075          1.000   PREDICTED: hypothetical protein XP_002344878 
LOC100289090          1.000   PREDICTED: hypothetical protein XP_002343380 
LOC100128511          0.029   PREDICTED: hypothetical protein 
LOC100128511          0.029   PREDICTED: hypothetical protein 
LOC100128511          0.029   PREDICTED: hypothetical protein 
LOC100292645          0.029   PREDICTED: hypothetical protein 
LOC100288957          0.029   PREDICTED: hypothetical protein 
LOC100288957          0.029   PREDICTED: hypothetical protein XP_002342132 
NHSL1                 0.029   NHS-like 1 
ATG9B                 0.026   ATG9 autophagy related 9 homolog B 
RERE                  0.022   atrophin-1 like protein isoform b 
RERE                  0.022   atrophin-1 like protein isoform a 
RERE                  0.022   atrophin-1 like protein isoform a 
ADAM15                0.022   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.018   a disintegrin and metalloproteinase domain 15 isofor...
LOC100289786          0.018   PREDICTED: hypothetical protein XP_002348005 
LOC100287012          0.018   PREDICTED: hypothetical protein XP_002343725 
DNM3                  0.018   dynamin 3 isoform a 
DNM3                  0.018   dynamin 3 isoform b 
JMJD1C                0.018   jumonji domain containing 1C isoform a 
JMJD1C                0.018   jumonji domain containing 1C isoform b 
LOC100131165          0.018   PREDICTED: hypothetical protein 
KIAA1967              0.018   p30 DBC protein 
KIAA1967              0.018   p30 DBC protein 
PRDM2                 0.018   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.018   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.018   retinoblastoma protein-binding zinc finger protein i...
DNHD1                 0.015   dynein heavy chain domain 1 isoform 1 
DGKZ                  0.015   diacylglycerol kinase zeta isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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