Guide to the Human Genome
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Name: LOC100293956 Sequence: fasta or formatted (183aa) NCBI GI: 239757298
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8         27           3
 C cysteine            3.8          7           1
 D aspartate           2.7          5           1
 E glutamate           1.1          2           1
 F phenylalanine       4.9          9           3
 G glycine             8.2         15           2
 H histidine           3.8          7           1
 I isoleucine          1.1          2           1
 K lysine              1.6          3           1
 L leucine            14.8         27           3
 M methionine          1.6          3           1
 N asparagine          1.1          2           1
 P proline            10.9         20           2
 Q glutamine           2.2          4           1
 R arginine           12.0         22           3
 S serine              9.8         18           2
 T threonine           1.1          2           1
 V valine              3.3          6           1
 W tryptophan          1.1          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289786          0.767   PREDICTED: hypothetical protein XP_002348005 
LOC100287012          0.767   PREDICTED: hypothetical protein XP_002343725 
LOC100291458          0.037   PREDICTED: hypothetical protein XP_002347107 
LOC100288099          0.037   PREDICTED: hypothetical protein XP_002342970 
LOC100293175          0.028   PREDICTED: hypothetical protein 
IRS2                  0.020   insulin receptor substrate 2 
MED1                  0.014   mediator complex subunit 1 
CBX2                  0.014   chromobox homolog 2 isoform 1 
BCL2                  0.014   B-cell lymphoma protein 2 beta isoform 
BCL2                  0.014   B-cell lymphoma protein 2 alpha isoform 
LOC100129571          0.014   PREDICTED: similar to hCG1646049 
LOC100129571          0.014   PREDICTED: similar to hCG1646049 
LOC100129571          0.014   PREDICTED: similar to hCG1646049 
FXR1                  0.011   fragile X mental retardation-related protein 1 isofo...
FXR1                  0.011   fragile X mental retardation-related protein 1 isofo...
FXR1                  0.011   fragile X mental retardation-related protein 1 isofo...
LOC100292126          0.009   PREDICTED: hypothetical protein XP_002344885 
LOC100289316          0.009   PREDICTED: hypothetical protein 
LOC100289332          0.009   PREDICTED: hypothetical protein 
LOC100288836          0.009   PREDICTED: hypothetical protein XP_002343912 
LOC100289316          0.009   PREDICTED: hypothetical protein XP_002343619 
LOC100289332          0.009   PREDICTED: hypothetical protein XP_002343384 
ANKRD44               0.009   ankyrin repeat domain 44 
CDAN1                 0.009   codanin 1 
CACNA1F               0.009   calcium channel, voltage-dependent, L type, alpha 1F...
NKAPL                 0.009   NFKB activating protein-like 
LOC730254             0.009   PREDICTED: hypothetical protein 
LOC730254             0.009   PREDICTED: hypothetical protein 
EML3                  0.009   echinoderm microtubule associated protein like 3 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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