Guide to the Human Genome
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Name: LOC100287012 Sequence: fasta or formatted (260aa) NCBI GI: 239746294
Description:

PREDICTED: hypothetical protein XP_002343725

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         29           3
 C cysteine            3.5          9           1
 D aspartate           3.5          9           1
 E glutamate           0.8          2           1
 F phenylalanine       4.2         11           3
 G glycine            10.0         26           2
 H histidine           4.2         11           1
 I isoleucine          0.8          2           1
 K lysine              1.5          4           1
 L leucine            15.8         41           4
 M methionine          0.8          2           1
 N asparagine          1.2          3           1
 P proline             9.6         25           2
 Q glutamine           4.2         11           2
 R arginine           13.1         34           3
 S serine              8.8         23           2
 T threonine           3.1          8           2
 V valine              1.9          5           1
 W tryptophan          1.5          4           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343725 
LOC100289786          1.000   PREDICTED: hypothetical protein XP_002348005 
LOC100293956          0.523   PREDICTED: hypothetical protein 
LOC100291458          0.025   PREDICTED: hypothetical protein XP_002347107 
LOC100288099          0.025   PREDICTED: hypothetical protein XP_002342970 
LOC100293175          0.019   PREDICTED: hypothetical protein 
KCNH3                 0.016   potassium voltage-gated channel, subfamily H (eag-re...
EGR4                  0.016   early growth response 4 
RANBP10               0.016   RAN binding protein 10 
IRS2                  0.014   insulin receptor substrate 2 
LOC100292287          0.010   PREDICTED: hypothetical protein 
LOC100129571          0.010   PREDICTED: similar to hCG1646049 
LOC100289576          0.010   PREDICTED: hypothetical protein 
LOC100129571          0.010   PREDICTED: similar to hCG1646049 
LOC100289576          0.010   PREDICTED: hypothetical protein XP_002343622 
LOC100129571          0.010   PREDICTED: similar to hCG1646049 
MED1                  0.010   mediator complex subunit 1 
RANBP9                0.010   RAN binding protein 9 
LOC100292075          0.010   PREDICTED: hypothetical protein XP_002344878 
LOC100290996          0.010   PREDICTED: hypothetical protein XP_002347569 
LOC100289090          0.010   PREDICTED: hypothetical protein XP_002343380 
CBX2                  0.010   chromobox homolog 2 isoform 1 
LOC728767             0.010   PREDICTED: hypothetical protein 
LOC728767             0.010   PREDICTED: hypothetical protein 
MARCH9                0.010   membrane-associated RING-CH protein IX 
FXR1                  0.008   fragile X mental retardation-related protein 1 isofo...
FXR1                  0.008   fragile X mental retardation-related protein 1 isofo...
FXR1                  0.008   fragile X mental retardation-related protein 1 isofo...
GLG1                  0.008   golgi apparatus protein 1 isoform 3 
GLG1                  0.008   golgi apparatus protein 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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