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Search of human proteins with 239746248
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746248 PREDICTED: hypothetical protein XP_002343714 [Homo
sapiens]
(217 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751748 PREDICTED: hypothetical protein [Homo sapiens] 450 e-127
gi|239746248 PREDICTED: hypothetical protein XP_002343714 [Homo ... 450 e-127
gi|239757240 PREDICTED: hypothetical protein [Homo sapiens] 449 e-127
gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a ... 39 0.003
gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b... 39 0.003
gi|222537714 taxilin beta [Homo sapiens] 38 0.008
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 36 0.029
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 36 0.029
gi|48762934 alpha 2 type I collagen [Homo sapiens] 35 0.064
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 35 0.064
gi|153792074 proline rich 12 [Homo sapiens] 35 0.064
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 34 0.084
gi|239757601 PREDICTED: hypothetical protein [Homo sapiens] 34 0.11
gi|239752103 PREDICTED: hypothetical protein XP_002348112 [Homo ... 34 0.11
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 34 0.11
gi|239746607 PREDICTED: hypothetical protein XP_002343798 [Homo ... 34 0.11
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 34 0.11
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 34 0.11
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 34 0.11
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 34 0.11
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 34 0.11
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 34 0.11
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 34 0.11
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 34 0.11
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 34 0.11
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 34 0.11
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens] 34 0.11
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 34 0.11
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 34 0.11
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 34 0.11
>gi|239751748 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 450 bits (1158), Expect = e-127
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG
Sbjct: 1 MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
Query: 61 SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE 120
SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE
Sbjct: 61 SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE 120
Query: 121 HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG 180
HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG
Sbjct: 121 HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG 180
Query: 181 LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL 217
LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL
Sbjct: 181 LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL 217
>gi|239746248 PREDICTED: hypothetical protein XP_002343714 [Homo
sapiens]
Length = 217
Score = 450 bits (1158), Expect = e-127
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG
Sbjct: 1 MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
Query: 61 SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE 120
SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE
Sbjct: 61 SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE 120
Query: 121 HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG 180
HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG
Sbjct: 121 HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG 180
Query: 181 LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL 217
LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL
Sbjct: 181 LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL 217
>gi|239757240 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 449 bits (1155), Expect = e-127
Identities = 216/217 (99%), Positives = 217/217 (100%)
Query: 1 MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMA+WSLAMSSGWKTWAPREG
Sbjct: 1 MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMANWSLAMSSGWKTWAPREG 60
Query: 61 SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE 120
SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE
Sbjct: 61 SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE 120
Query: 121 HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG 180
HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG
Sbjct: 121 HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG 180
Query: 181 LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL 217
LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL
Sbjct: 181 LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL 217
>gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a
[Homo sapiens]
Length = 730
Score = 38.9 bits (89), Expect = 0.003
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 29/169 (17%)
Query: 72 QRMTCGVPNVACEAQEHVPTSLE--------VACGIDILGLGDVCASLEAATGPVEEHGP 123
+RM G+ + +H+ +S+E + G++ +G G + LE P++ G
Sbjct: 448 ERMGSGIERMGPLGLDHMASSIERMGQTMERIGSGVERMGAG-MGFGLERMAAPIDRVGQ 506
Query: 124 LGSR---GQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVA--------------AQQR 166
R G +++GPA++ GLS+ VP + GPV ++
Sbjct: 507 TIERMGSGVERMGPAIERMGLSMERMVPAGMGAGLERMGPVMDRMATGLERMGANNLERM 566
Query: 167 GAARLGGIGHHEAGLP-FQPQELGVIGPQQ-PPRGQGL-RWGQAQAGTG 212
G R+G GL L +GP P G G+ R G A G G
Sbjct: 567 GLERMGANSLERMGLERMGANSLERMGPAMGPALGAGIERMGLAMGGGG 615
>gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b
[Homo sapiens]
Length = 691
Score = 38.9 bits (89), Expect = 0.003
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 29/169 (17%)
Query: 72 QRMTCGVPNVACEAQEHVPTSLE--------VACGIDILGLGDVCASLEAATGPVEEHGP 123
+RM G+ + +H+ +S+E + G++ +G G + LE P++ G
Sbjct: 409 ERMGSGIERMGPLGLDHMASSIERMGQTMERIGSGVERMGAG-MGFGLERMAAPIDRVGQ 467
Query: 124 LGSR---GQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVA--------------AQQR 166
R G +++GPA++ GLS+ VP + GPV ++
Sbjct: 468 TIERMGSGVERMGPAIERMGLSMERMVPAGMGAGLERMGPVMDRMATGLERMGANNLERM 527
Query: 167 GAARLGGIGHHEAGLP-FQPQELGVIGPQQ-PPRGQGL-RWGQAQAGTG 212
G R+G GL L +GP P G G+ R G A G G
Sbjct: 528 GLERMGANSLERMGLERMGANSLERMGPAMGPALGAGIERMGLAMGGGG 576
>gi|222537714 taxilin beta [Homo sapiens]
Length = 684
Score = 37.7 bits (86), Expect = 0.008
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 3 AKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSL-AMSSGWKTWAPREGS 61
A+A G + A PS S S + L + L + ASW A +SG AP E S
Sbjct: 563 AEAEGGSDAEPPSKASNSPAGLGAETQCEGLPVGAQADQASWKPEAEASGQAPQAPTEAS 622
Query: 62 CCSRRNMEPSQRMTCGVPNVACEAQEHV 89
Q+M VP AC A+EHV
Sbjct: 623 L---------QKMEADVPAPACAAEEHV 641
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 35.8 bits (81), Expect = 0.029
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIG 175
GP GP G+RG Q A G + RV PG P + + G G
Sbjct: 876 GPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARG-- 933
Query: 176 HHEAGLPFQPQELGVIGPQQPP--RGQGLRWGQAQAGTGPGPQ 216
++G P + E G+ GP PP +G+ G + A PGPQ
Sbjct: 934 --DSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQ 974
Score = 28.5 bits (62), Expect = 4.6
Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKA--GPVAAQQRGAARLGG 173
GP E GP G RG + A +G PG GP AA++ G
Sbjct: 126 GPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAG 185
Query: 174 IGHHEAG---LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQ 216
+AG L +G +GP+ PP G PGPQ
Sbjct: 186 GFDEKAGGAQLGVMQGPMGPMGPRGPPGPAG----------APGPQ 221
Score = 28.5 bits (62), Expect = 4.6
Identities = 29/105 (27%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIG 175
GP + GP G+ G+ QG + V G P A ++G G+
Sbjct: 570 GPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGL- 628
Query: 176 HHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTG-----PGP 215
GLP + E G GP P G R Q G PGP
Sbjct: 629 ---RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP 670
Score = 27.7 bits (60), Expect = 7.8
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 109 ASLEAATGPVEEHGPLGSRGQQ----QVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQ 164
A + A GP E G G+RG+ +GP + +G PG L K P
Sbjct: 476 AGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGE-RGAPGNRGFPGQDGLAGPKGAP---G 531
Query: 165 QRGAARLGGIGHHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGP 215
+RG + L G G P +P E G+ G + G Q + G P
Sbjct: 532 ERGPSGLAG-PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAP 581
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 35.8 bits (81), Expect = 0.029
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIG 175
GP GP G+RG Q A G + RV PG P + + G G
Sbjct: 807 GPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARG-- 864
Query: 176 HHEAGLPFQPQELGVIGPQQPP--RGQGLRWGQAQAGTGPGPQ 216
++G P + E G+ GP PP +G+ G + A PGPQ
Sbjct: 865 --DSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQ 905
Score = 28.5 bits (62), Expect = 4.6
Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKA--GPVAAQQRGAARLGG 173
GP E GP G RG + A +G PG GP AA++ G
Sbjct: 57 GPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAG 116
Query: 174 IGHHEAG---LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQ 216
+AG L +G +GP+ PP G PGPQ
Sbjct: 117 GFDEKAGGAQLGVMQGPMGPMGPRGPPGPAG----------APGPQ 152
Score = 28.5 bits (62), Expect = 4.6
Identities = 29/105 (27%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIG 175
GP + GP G+ G+ QG + V G P A ++G G+
Sbjct: 501 GPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGL- 559
Query: 176 HHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTG-----PGP 215
GLP + E G GP P G R Q G PGP
Sbjct: 560 ---RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP 601
Score = 27.7 bits (60), Expect = 7.8
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 109 ASLEAATGPVEEHGPLGSRGQQ----QVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQ 164
A + A GP E G G+RG+ +GP + +G PG L K P
Sbjct: 407 AGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGE-RGAPGNRGFPGQDGLAGPKGAP---G 462
Query: 165 QRGAARLGGIGHHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGP 215
+RG + L G G P +P E G+ G + G Q + G P
Sbjct: 463 ERGPSGLAG-PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAP 512
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 34.7 bits (78), Expect = 0.064
Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 111 LEAATGPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAAR 170
L +GPV G G+ G A L G++ +PG + + GPV A AR
Sbjct: 287 LPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGI----PGPVGAAGATGAR 342
Query: 171 LGGIGHH-------EAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTG--PGP 215
G +G E+G +P G GP P +G R +AG+ PGP
Sbjct: 343 -GLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGP 395
Score = 30.4 bits (67), Expect = 1.2
Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 25/112 (22%)
Query: 108 CASLEAAT---GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQ 164
C SL+ T GP + GP G RG GP + G PG GP
Sbjct: 22 CQSLQEETVRKGPAGDRGPRGERGPP--GPPGR-DGEDGPTGPPGPPG----PPGPPGLG 74
Query: 165 QRGAARLGGIGHHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQ 216
AA+ G G+ P +G++GP+ PP G PGPQ
Sbjct: 75 GNFAAQYDG-----KGVGLGPGPMGLMGPRGPPGAAG----------APGPQ 111
Score = 29.6 bits (65), Expect = 2.1
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 12/106 (11%)
Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIG 175
GP GP GSRG G + R PG + P A + G G
Sbjct: 766 GPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRG-- 823
Query: 176 HHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTG-----PGPQ 216
+ G + E+G +G PP G + +AGT PGPQ
Sbjct: 824 --DQGPVGRTGEVGAVG---PPGFAGEKGPSGEAGTAGPPGTPGPQ 864
Score = 28.9 bits (63), Expect = 3.5
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 122 GPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAA----RLGGIGHH 177
G +G RG A QG PG + GP A RG A + G GH
Sbjct: 94 GLMGPRGPPGAAGAPGPQGFQGPAGEPGEPG----QTGPAGA--RGPAGPPGKAGEDGH- 146
Query: 178 EAGLPFQPQELGVIGPQ 194
G P +P E GV+GPQ
Sbjct: 147 -PGKPGRPGERGVVGPQ 162
Score = 28.5 bits (62), Expect = 4.6
Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 24/111 (21%)
Query: 112 EAATGPVEEHGPLGSRGQQ----------------QVGPAVQLQGLSVRVPVPGVQALVR 155
+ + GPV GP+GS G GPA G V +PG+ V
Sbjct: 237 DGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGP-AGPRGEVGLPGLSGPVG 295
Query: 156 VKAGPVA---AQQRGAARLGGIGHHEAGLPFQPQELGVIGPQQPPRGQGLR 203
P A +GAA L G+ AG P P G+ GP G R
Sbjct: 296 PPGNPGANGLTGAKGAAGLPGV----AGAPGLPGPRGIPGPVGAAGATGAR 342
Score = 28.5 bits (62), Expect = 4.6
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 116 GPVEEHGPLGSRGQQ----QVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARL 171
GP + GP+G G +GPA +G + PG + GP +
Sbjct: 460 GPAGKEGPVGLPGIDGRPGPIGPA-GARGEPGNIGFPGPK-------GPTGDPGKN---- 507
Query: 172 GGIGHHE-AGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGP 215
G GH AG P G G Q PP QG++ G+ + G PGP
Sbjct: 508 GDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGP-PGP 551
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 34.7 bits (78), Expect = 0.064
Identities = 38/126 (30%), Positives = 49/126 (38%), Gaps = 25/126 (19%)
Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRG-------A 168
GP E G G GQ V +G + R PG + + P A +G A
Sbjct: 295 GPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRA 354
Query: 169 ARLGGIGHH-------EAGLPFQPQELG------VIGPQQPPRGQGLRWGQAQAGTG--- 212
LG G +AG+P + E G +GPQ PP G+R Q Q G+
Sbjct: 355 GELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDP 414
Query: 213 --PGPQ 216
PGPQ
Sbjct: 415 GLPGPQ 420
Score = 30.4 bits (67), Expect = 1.2
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 17/109 (15%)
Query: 111 LEAATGPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALV--RVKAGPVAAQQRGA 168
L GP G G G+ + + GL+ R PG + R GP G
Sbjct: 57 LPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPP-----GP 111
Query: 169 ARLGGIGHHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTG--PGP 215
LGG GLP P E GV G PP G GLR +G PGP
Sbjct: 112 PGLGG-----KGLPGPPGEAGVSG---PPGGIGLRGPPGPSGLPGLPGP 152
Score = 30.0 bits (66), Expect = 1.6
Identities = 34/94 (36%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 116 GPVEEHGPLGSRGQQQV-GPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGG- 173
GP GP G+ G Q V GP L GL VPG+ V G A++QR GG
Sbjct: 475 GPKGTQGPNGTSGVQGVPGPPGPL-GLQGVPGVPGITGKPGV-PGKEASEQRIRELCGGM 532
Query: 174 IGHHEAGL------PFQPQELGVIGPQQPPRGQG 201
I A L P P +G GP PP G
Sbjct: 533 ISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPG 566
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 34.7 bits (78), Expect = 0.064
Identities = 36/110 (32%), Positives = 44/110 (40%), Gaps = 19/110 (17%)
Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQGL-------------SVRVPVPGVQALVRVKA-- 158
ATGP G G P +Q G + R P P A + ++
Sbjct: 362 ATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGGYGAAAGGATRPPPPRSTATPKCQSLG 421
Query: 159 GPVAAQQRGAARLGGIGHHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQ 208
GP AA G A G +A P QPQ G++GPQ GQG GQAQ
Sbjct: 422 GPAAAYATGKASGAGGAGGQAYSPGQPQ--GLLGPQ--AYGQGFGGGQAQ 467
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 34.3 bits (77), Expect = 0.084
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAG----PVAAQQRGAARL 171
GPV + GP GSRG + L G +PGV R K G P +RG L
Sbjct: 745 GPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPG-KRGKMGMPGFPGVFGERGPPGL 803
Query: 172 GGIGHHEAGLPFQP------QELGVIGPQQPPRGQGLR 203
G E GLP P +LGV+GP P +G++
Sbjct: 804 DG-NPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMK 840
Score = 33.5 bits (75), Expect = 0.14
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALV--------RVKAGPVAAQQRG 167
GP + G G +G+ A QG + VPG R GP A
Sbjct: 1240 GPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAP--- 1296
Query: 168 AARLGGIGHHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGP 215
R+G G E GL G++GP PP +G + Q + G GP
Sbjct: 1297 -GRMGAQG--EPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGP 1341
Score = 28.9 bits (63), Expect = 3.5
Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKA--------GPVAAQQRG 167
GP + GP G G A L+G R PG L VK GPV +Q
Sbjct: 937 GPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGLDGVKGEPGDPGRPGPV-GEQGF 995
Query: 168 AARLGGIGHHEAGLPFQPQELGVIGPQ--QPPRGQ----GLRWGQAQAGTGPGPQ 216
+G +G E G+ + + G++GP P+G G+ G G PGPQ
Sbjct: 996 MGFIGLVG--EPGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGE-PGPQ 1047
>gi|239757601 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 33.9 bits (76), Expect = 0.11
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 1 MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
+W + + GP +CS + L GS L+A S+ R A+ S + WK +P
Sbjct: 86 LWLSGKATCCSPGPPNCSSATRALRGSSS---LRA-SVSRRATCSTKRRALWKFCSPSRS 141
Query: 61 SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLE 94
SR+ M + + C + +E + T E
Sbjct: 142 EPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSE 175
>gi|239752103 PREDICTED: hypothetical protein XP_002348112 [Homo
sapiens]
Length = 308
Score = 33.9 bits (76), Expect = 0.11
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 1 MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
+W + + GP +CS + L GS L+A S+ R A+ S + WK +P
Sbjct: 86 LWLSGKATCCSPGPPNCSSATRALRGSSS---LRA-SVSRRATCSTKRRALWKFCSPSRS 141
Query: 61 SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLE 94
SR+ M + + C + +E + T E
Sbjct: 142 EPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSE 175
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 33.9 bits (76), Expect = 0.11
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 3 AKARGATRAGGPSSCSGSR----SPLSGS-RRRTWLKAKSLPRMASWSLAMSSGWKTWAP 57
A RGA RAG ++ G R +PLSG ++ ++L+ K+LPR+ S A + P
Sbjct: 228 APRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALP 287
Query: 58 REG 60
R G
Sbjct: 288 RSG 290
>gi|239746607 PREDICTED: hypothetical protein XP_002343798 [Homo
sapiens]
Length = 452
Score = 33.9 bits (76), Expect = 0.11
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 1 MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
+W + + GP +CS + L GS L+A S+ R A+ S + WK +P
Sbjct: 86 LWLSGKATCCSPGPPNCSSATRALRGSSS---LRA-SVSRRATCSTKRRALWKFCSPSRS 141
Query: 61 SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLE 94
SR+ M + + C + +E + T E
Sbjct: 142 EPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSE 175
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 33.9 bits (76), Expect = 0.11
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 3 AKARGATRAGGPSSCSGSR----SPLSGS-RRRTWLKAKSLPRMASWSLAMSSGWKTWAP 57
A RGA RAG ++ G R +PLSG ++ ++L+ K+LPR+ S A + P
Sbjct: 228 APRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALP 287
Query: 58 REG 60
R G
Sbjct: 288 RSG 290
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
A G GP GS+G+ G V G L++ P PG+ + P
Sbjct: 422 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 480
Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
Q+G L G H E G +P ++G GPQ PP G
Sbjct: 481 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 521
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
A G GP GS+G+ G V G L++ P PG+ + P
Sbjct: 371 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 429
Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
Q+G L G H E G +P ++G GPQ PP G
Sbjct: 430 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 470
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
A G GP GS+G+ G V G L++ P PG+ + P
Sbjct: 360 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 418
Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
Q+G L G H E G +P ++G GPQ PP G
Sbjct: 419 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 459
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
A G GP GS+G+ G V G L++ P PG+ + P
Sbjct: 362 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 420
Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
Q+G L G H E G +P ++G GPQ PP G
Sbjct: 421 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 461
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
A G GP GS+G+ G V G L++ P PG+ + P
Sbjct: 365 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 423
Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
Q+G L G H E G +P ++G GPQ PP G
Sbjct: 424 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 464
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
A G GP GS+G+ G V G L++ P PG+ + P
Sbjct: 400 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 458
Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
Q+G L G H E G +P ++G GPQ PP G
Sbjct: 459 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 499
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
A G GP GS+G+ G V G L++ P PG+ + P
Sbjct: 369 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 427
Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
Q+G L G H E G +P ++G GPQ PP G
Sbjct: 428 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 468
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
A G GP GS+G+ G V G L++ P PG+ + P
Sbjct: 422 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 480
Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
Q+G L G H E G +P ++G GPQ PP G
Sbjct: 481 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 521
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
A G GP GS+G+ G V G L++ P PG+ + P
Sbjct: 422 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 480
Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
Q+G L G H E G +P ++G GPQ PP G
Sbjct: 481 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 521
>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
Length = 686
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
A G GP GS+G+ G V G L++ P PG+ + P
Sbjct: 403 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 461
Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
Q+G L G H E G +P ++G GPQ PP G
Sbjct: 462 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 502
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
A G GP GS+G+ G V G L++ P PG+ + P
Sbjct: 381 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 439
Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
Q+G L G H E G +P ++G GPQ PP G
Sbjct: 440 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 480
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
A G GP GS+G+ G V G L++ P PG+ + P
Sbjct: 393 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 451
Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
Q+G L G H E G +P ++G GPQ PP G
Sbjct: 452 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 492
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
A G GP GS+G+ G V G L++ P PG+ + P
Sbjct: 422 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 480
Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
Q+G L G H E G +P ++G GPQ PP G
Sbjct: 481 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 521
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,671,293
Number of Sequences: 37866
Number of extensions: 555642
Number of successful extensions: 2357
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 2029
Number of HSP's gapped (non-prelim): 421
length of query: 217
length of database: 18,247,518
effective HSP length: 98
effective length of query: 119
effective length of database: 14,536,650
effective search space: 1729861350
effective search space used: 1729861350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.