Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239746241
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
sapiens]
(461 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ... 951 0.0
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens] 945 0.0
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens] 945 0.0
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 49 7e-06
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 47 5e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 47 5e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 45 1e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 45 2e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 45 2e-04
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 45 2e-04
gi|169169912 PREDICTED: hypothetical protein [Homo sapiens] 44 4e-04
gi|239749005 PREDICTED: hypothetical protein [Homo sapiens] 44 4e-04
gi|239743025 PREDICTED: hypothetical protein [Homo sapiens] 44 4e-04
gi|239757701 PREDICTED: hypothetical protein XP_002345525 [Homo ... 43 5e-04
gi|239752186 PREDICTED: hypothetical protein [Homo sapiens] 43 5e-04
gi|239746709 PREDICTED: hypothetical protein XP_002343816 [Homo ... 43 5e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 42 0.001
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|126352446 elastin isoform d precursor [Homo sapiens] 42 0.002
gi|126352322 elastin isoform c precursor [Homo sapiens] 41 0.002
gi|126352700 elastin isoform b precursor [Homo sapiens] 41 0.002
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|38373671 SEC24-related protein C [Homo sapiens] 41 0.002
gi|38373669 SEC24-related protein C [Homo sapiens] 41 0.002
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 40 0.004
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens] 40 0.004
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens] 40 0.004
>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
sapiens]
Length = 461
Score = 951 bits (2457), Expect = 0.0
Identities = 461/461 (100%), Positives = 461/461 (100%)
Query: 1 MGVGCSSCRLPCERTELCSRKRAGLLTGLGLTCDALRDSTCRSLHSECLLYGNRDFNQPW 60
MGVGCSSCRLPCERTELCSRKRAGLLTGLGLTCDALRDSTCRSLHSECLLYGNRDFNQPW
Sbjct: 1 MGVGCSSCRLPCERTELCSRKRAGLLTGLGLTCDALRDSTCRSLHSECLLYGNRDFNQPW 60
Query: 61 PPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPRGA 120
PPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPRGA
Sbjct: 61 PPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPRGA 120
Query: 121 VGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGG 180
VGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGG
Sbjct: 121 VGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGG 180
Query: 181 EKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPP 240
EKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPP
Sbjct: 181 EKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPP 240
Query: 241 SLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKT 300
SLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKT
Sbjct: 241 SLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKT 300
Query: 301 PGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAA 360
PGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAA
Sbjct: 301 PGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAA 360
Query: 361 VSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARG 420
VSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARG
Sbjct: 361 VSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARG 420
Query: 421 LQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLGLQDAD 461
LQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLGLQDAD
Sbjct: 421 LQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLGLQDAD 461
>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 945 bits (2443), Expect = 0.0
Identities = 459/461 (99%), Positives = 459/461 (99%)
Query: 1 MGVGCSSCRLPCERTELCSRKRAGLLTGLGLTCDALRDSTCRSLHSECLLYGNRDFNQPW 60
MGVGCSSCRLPCERTELCSRKRAGLLTGLGL CDALRDSTCRSL SECLLYGNRDFNQPW
Sbjct: 1 MGVGCSSCRLPCERTELCSRKRAGLLTGLGLRCDALRDSTCRSLRSECLLYGNRDFNQPW 60
Query: 61 PPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPRGA 120
PPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPRGA
Sbjct: 61 PPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPRGA 120
Query: 121 VGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGG 180
VGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGG
Sbjct: 121 VGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGG 180
Query: 181 EKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPP 240
EKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPP
Sbjct: 181 EKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPP 240
Query: 241 SLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKT 300
SLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKT
Sbjct: 241 SLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKT 300
Query: 301 PGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAA 360
PGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAA
Sbjct: 301 PGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAA 360
Query: 361 VSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARG 420
VSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARG
Sbjct: 361 VSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARG 420
Query: 421 LQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLGLQDAD 461
LQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLGLQDAD
Sbjct: 421 LQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLGLQDAD 461
>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 945 bits (2443), Expect = 0.0
Identities = 459/461 (99%), Positives = 459/461 (99%)
Query: 1 MGVGCSSCRLPCERTELCSRKRAGLLTGLGLTCDALRDSTCRSLHSECLLYGNRDFNQPW 60
MGVGCSSCRLPCERTELCSRKRAGLLTGLGL CDALRDSTCRSL SECLLYGNRDFNQPW
Sbjct: 1 MGVGCSSCRLPCERTELCSRKRAGLLTGLGLRCDALRDSTCRSLRSECLLYGNRDFNQPW 60
Query: 61 PPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPRGA 120
PPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPRGA
Sbjct: 61 PPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPRGA 120
Query: 121 VGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGG 180
VGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGG
Sbjct: 121 VGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGG 180
Query: 181 EKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPP 240
EKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPP
Sbjct: 181 EKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPP 240
Query: 241 SLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKT 300
SLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKT
Sbjct: 241 SLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKT 300
Query: 301 PGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAA 360
PGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAA
Sbjct: 301 PGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAA 360
Query: 361 VSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARG 420
VSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARG
Sbjct: 361 VSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARG 420
Query: 421 LQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLGLQDAD 461
LQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLGLQDAD
Sbjct: 421 LQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLGLQDAD 461
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 49.3 bits (116), Expect = 7e-06
Identities = 113/446 (25%), Positives = 158/446 (35%), Gaps = 64/446 (14%)
Query: 61 PPSPGRR-LNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGP--P 117
P PG L+RP + + G SGL ++G + G G + L GP P
Sbjct: 179 PSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGP 238
Query: 118 RGAVGAAGAQDFLNPR-----PLWPNLD-LPGL--RPGKITASARPSSQALQFANSRVSL 169
G G G + R P P D PG PG++ + P ++ A L
Sbjct: 239 PGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGL 298
Query: 170 GTHRIGEGVGGEKRQEAGSPGWNPGLG-LARLGSYSTV----------CLAPELAFGLGG 218
HR +G+ G K E G+PG G +G+ + L P+ A G G
Sbjct: 299 KGHRGHKGLEGPK-GEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRG 357
Query: 219 VLRVSGPATPELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRG 278
+ G P L P S G G+ G E G GP + P + G
Sbjct: 358 AHGMPGKPGPMGPLG----IPGSSGFPGNPGMKGEAGPTGARGP--EGPQGQRGETGPPG 411
Query: 279 AAASPCLQVAQQSFLELGAQKTPGG-GKNLGPRLCG----KSPRGSQTARSSS------- 326
SP L A +G TPG G P G P GS + S+
Sbjct: 412 PVGSPGLPGA------IGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRG 465
Query: 327 -PSRAWAPGWRQLGRGPATPMLHGL-GPVPPPLWAAVSASRWGGGGPQPLPQVSKEGS-- 382
P PG++ P HG+ GP+ PP R G P V + G+
Sbjct: 466 QPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPG 525
Query: 383 --------GLARPDPSCCVRAGLGAAKTPGAQGE--RLGPRGTRRARGLQLRPVGGQSRR 432
GL P + R +G++ G+QG+ R G G ARGL P
Sbjct: 526 NRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEG 585
Query: 433 EAAPACSGPQPCRPHGTGAASSLGLQ 458
+ P + + RP G S+G++
Sbjct: 586 KLGPLGAPGEDGRP---GPPGSIGIR 608
Score = 47.8 bits (112), Expect = 2e-05
Identities = 133/477 (27%), Positives = 155/477 (32%), Gaps = 123/477 (25%)
Query: 58 QPWPPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGP- 116
+P PP +P ++ PGP SSG K G AG GV R +GP
Sbjct: 598 RPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGE-AGNAGV---PGQRGAPGKDGEVGPS 653
Query: 117 -PRGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVS-LGTH-- 172
P G G AG + P LPG PG +P Q + V LG
Sbjct: 654 GPVGPPGLAGERGEQGPPGPTGFQGLPG-PPGPPGEGGKPGDQGVPGDPGAVGPLGPRGE 712
Query: 173 --RIGE-------GVGGEKRQEA--------GSPGWN--------PGL------------ 195
GE G+ GEK GSPG + PGL
Sbjct: 713 RGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGT 772
Query: 196 --------GLARLGSYSTVCLAPELAFGLGGVLRVSGPATP-----ELALRSRAVTPPSL 242
G+ G+ T + A GL G L GPA P E R P S
Sbjct: 773 PGPKGDRGGIGEKGAEGTA--GNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSR 830
Query: 243 GGGGDRGENREEGRDLCLGPVAKKPDPRALA----ISSRGAAASPCLQVAQQSFLELGAQ 298
G G RGEN G GP P +G A SP Q G
Sbjct: 831 GNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQ---------GLA 881
Query: 299 KTPG-GGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPL 357
+PG G N P L K RG+Q P PG GR +GP P
Sbjct: 882 GSPGPHGPNGVPGL--KGGRGTQ----GPPGATGFPG--SAGR---------VGPPGPA- 923
Query: 358 WAAVSASRWGGGGPQ-PLPQVSKEGSGLARPDPSCCVRAG-LGAAKTPGAQGER------ 409
G GP PL + KEG R DP R G G A PG G++
Sbjct: 924 ---------GAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGED 974
Query: 410 --------LGPRGTRRARGLQLRPVGGQSRREAAPACSGP--QPCRPHGTGAASSLG 456
GP GT RG+ P GQ P GP P + TGA G
Sbjct: 975 GQPGPDGPPGPAGTTGQRGIVGMP--GQRGERGMPGLPGPAGTPGKVGPTGATGDKG 1029
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 46.6 bits (109), Expect = 5e-05
Identities = 63/249 (25%), Positives = 89/249 (35%), Gaps = 25/249 (10%)
Query: 218 GVLRVSGPATPELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSR 277
G R SG +P + S +P GG G R GR KP + + +
Sbjct: 290 GSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRS-GAHGGRPGSAHSPPDKPSSPSPRVRDK 348
Query: 278 GAAASPCLQVAQQSFLELGAQKTPGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQ 337
AAA+P + E + ++ + G R G + R + R SR+ A R+
Sbjct: 349 AAAAAPTPPARGK---ESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRR 405
Query: 338 LGRGPATPMLHGLGPVPPPLWAAVSASRW--------GGGGPQPLPQVSKE----GSGLA 385
GR P PP ++ S SR G G P P P+ E G G
Sbjct: 406 RGRRRPRPA--------PPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKR 457
Query: 386 RPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARGLQLRPVGGQSRREAAPACSGPQPCR 445
+ R + +PGA G R GP G +R P S R + + S R
Sbjct: 458 AKERPPRARPA-STSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKR 516
Query: 446 PHGTGAASS 454
PH + S
Sbjct: 517 PHSPSRSPS 525
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 46.6 bits (109), Expect = 5e-05
Identities = 65/234 (27%), Positives = 86/234 (36%), Gaps = 31/234 (13%)
Query: 224 GPATP--ELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAA 281
GPATP + A A TPPSL GG ++ + P + K P +GA
Sbjct: 1254 GPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSP--PKGAPT 1311
Query: 282 SPCLQVAQQSFLELGAQKTPGG-GKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGR 340
P G+ TP G P + SP+G+ T +++PS
Sbjct: 1312 PPAATPPSPK----GSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSK---------G 1358
Query: 341 GPATPMLHGLGPVPPPLWAAVSASRWGGGGPQPLPQVSKEGSGLARP--DPSCCVRAGLG 398
GP TP GP PP AA + + GGP P K G + P DP+ L
Sbjct: 1359 GPTTPSSKE-GPTPP---AATPSHK---GGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLS 1411
Query: 399 AAKTPGAQGERLGPRGTRRARGLQLRPVGGQSRREAAPACSGPQ--PCRPHGTG 450
K P R G ++G P + APA S P+ P P G
Sbjct: 1412 PKKAPATPVTREG--AATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKG 1463
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 45.4 bits (106), Expect = 1e-04
Identities = 112/432 (25%), Positives = 132/432 (30%), Gaps = 72/432 (16%)
Query: 58 QPWPPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPP 117
+P PP P +P + PGP + G K G G G P+ GPP
Sbjct: 562 RPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGG------------PGPQ-GPP 608
Query: 118 RGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEG 177
G G G Q P P P D P P Q LQ G G
Sbjct: 609 -GKNGETGPQG--PPGPTGPGGDKGDTGP--------PGPQGLQ---GLPGTGGPPGENG 654
Query: 178 VGGE--KRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSR 235
GE + +AG+PG G G A P G G+ +GP PE +
Sbjct: 655 KPGEPGPKGDAGAPGAPGGKGDAGAPGER----GPPGLAGAPGLRGGAGPPGPE-GGKGA 709
Query: 236 AVTPPSLGGGGDRGENREEGRDLCLGPVAKKPD------PRALAISSRGAAASPCLQVAQ 289
A P G G G G LG K D P A + + P +
Sbjct: 710 AGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGP 769
Query: 290 QSFLELGAQKTPGGGKNLGPRLCGKSPRGS--------------------QTARSSSPSR 329
K GG L P + G PRGS Q
Sbjct: 770 PGPAGQPGDKGEGGAPGL-PGIAG--PRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGE 826
Query: 330 AWAPGWRQLGRGPATP-MLHGLGPVPPPLWAAVSASRWGGGGPQPLPQVSKEGSGLARPD 388
APG + G P G GP PP V R GGP GL P
Sbjct: 827 RGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAG--FPGARGLPGPP 884
Query: 389 PSCCVRAGLGAAKTPGAQGERLGPRGTRRARGLQ--LRPVG--GQSRREAAPACSGPQPC 444
S G + +PG G GP G A G P G GQ + +P GP P
Sbjct: 885 GSNGNPGPPGPSGSPGKDGPP-GPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGP-PG 942
Query: 445 RPHGTGAASSLG 456
P G A G
Sbjct: 943 APGPLGIAGITG 954
Score = 36.6 bits (83), Expect = 0.049
Identities = 103/418 (24%), Positives = 130/418 (31%), Gaps = 118/418 (28%)
Query: 59 PWPPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPR 118
P PP P P PGP+ ++G G V+G KG + +P P
Sbjct: 890 PGPPGPS---GSPGKDGPPGPAGNTGAPGSPG-VSGPKGDA----GQPGEKGSPGAQGPP 941
Query: 119 GAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGV 178
GA G G R L +PG R P Q ++ + + G+
Sbjct: 942 GAPGPLGIAGITGARGLAGPPGMPGPR-------GSPGPQGVKGESGKPG------ANGL 988
Query: 179 GGEKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVT 238
GE+ G PG GL P LA G R P + L R
Sbjct: 989 SGER----GPPG-PQGL--------------PGLAGTAGEPGRDGNPGSDGLPGRDG--- 1026
Query: 239 PPSLGGGGDRGENREEGRDLC---------LGPVAKKPDPRALAISSRGAAASPCLQVAQ 289
S GG GDRGEN G +GP K D + A P
Sbjct: 1027 --SPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPA----- 1079
Query: 290 QSFLELGAQKTPGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHG 349
G++ PG + PRG + + A G R P P
Sbjct: 1080 ------GSRGAPG----------PQGPRGDK-GETGERGAAGIKGHRGFPGNPGAP---- 1118
Query: 350 LGPVPPPLWAAVSASRWGGGGPQPLPQVSKEGS-GLARPDPSCCVRAGLGAAKTPGAQGE 408
G P P Q GS G A P R +G + PG G
Sbjct: 1119 -------------------GSPGPAGQQGAIGSPGPAGP------RGPVGPSGPPGKDGT 1153
Query: 409 R--------LGPRGTRRARGLQLRPVGGQSRREAAPACSG-PQPCRPHGTGAASSLGL 457
GPRG R RG + P G + P G P PC G GAA+ G+
Sbjct: 1154 SGHPGPIGPPGPRGNRGERGSEGSP--GHPGQPGPPGPPGAPGPC-CGGVGAAAIAGI 1208
Score = 33.5 bits (75), Expect = 0.42
Identities = 61/235 (25%), Positives = 77/235 (32%), Gaps = 31/235 (13%)
Query: 236 AVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLEL 295
A +P S G G RGE +G GP P P + S G + L +
Sbjct: 356 AGSPGSNGAPGQRGEPGPQGHAGAQGP----PGPPGINGSPGGKGEMGPAGIPGAPGL-M 410
Query: 296 GAQKTPG-GGKNLGPRLCG-------------KSPRGSQTARSSSPSRAWAPGWRQLGRG 341
GA+ PG G N P L G PRG + + P A G
Sbjct: 411 GARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRG-ERGEAGIPGVPGAKGEDGKDGS 469
Query: 342 PATPMLHGLGPVPPPLWAAVSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAK 401
P P +GL P + G GP +P P P+ GAA
Sbjct: 470 PGEPGANGL---PGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPA----GPRGAAG 522
Query: 402 TPGAQGERLGPRGTRRARGLQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLG 456
PG G GP RG+ P G S + P S + RP G + G
Sbjct: 523 EPGRDGVPGGP----GMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRG 573
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 44.7 bits (104), Expect = 2e-04
Identities = 122/463 (26%), Positives = 150/463 (32%), Gaps = 95/463 (20%)
Query: 58 QPWPPSPGRRLNRPAAVREPGPSPSSGLAEKLG--AVAGKKGVFLLIFARLLTFAAPRLG 115
+P PP P +P + PGP ++G K G + G G+ L T AA G
Sbjct: 586 RPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 645
Query: 116 P-----PRGAVGAAGAQDFLN-PRPLWPNLDLPGLRPGKITASARPSSQAL-------QF 162
P RG GA G F P P P G +PG + L F
Sbjct: 646 PAGPAGERGEQGAPGPSGFQGLPGP--PGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGF 703
Query: 163 ANSRVSLGTHRI--------GEGVGGEKRQE--AGSPGWNPGLGLARL-GSYSTVCLA-- 209
R S G + G G K AG PG GL + G +A
Sbjct: 704 PGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGP 763
Query: 210 -----------PELAFGLGGVLRVSGPATPELALRSRA----VTPPS-LGGGGDRGENRE 253
PE A G G ++GP P + V PP G G RG E
Sbjct: 764 KGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGE 823
Query: 254 EGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKTPGGGKNLGPRLCG 313
G GP P P A GA P + Q + G PG
Sbjct: 824 RGE---TGP----PGPAGFA-GPPGADGQPGAKGEQGEAGQKGDAGAPG----------- 864
Query: 314 KSPRGSQTARS-SSPSRAWAPGWRQLGRGP--ATPMLHGLGPVPPPLWAAVSASRWGGGG 370
P+G A P+ P + +GP AT G V PP S G
Sbjct: 865 --PQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP------GSNGNPGP 916
Query: 371 PQPLPQVSKEGSGLARPDPSCCVRAG----LGAAKTPGAQGE-----------RLGPRGT 415
P P K+G AR D RAG G A PG +GE GP+G
Sbjct: 917 PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 976
Query: 416 RRARGLQLRPVGGQSRREAAPACSGP--QPCRPHGTGAASSLG 456
RG+ P GQ P GP +P + GA+ G
Sbjct: 977 AGQRGIVGLP--GQRGERGFPGLPGPSGEPGKQGAPGASGDRG 1017
Score = 43.9 bits (102), Expect = 3e-04
Identities = 118/457 (25%), Positives = 154/457 (33%), Gaps = 85/457 (18%)
Query: 59 PWPPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPR 118
P PP P AA G +G A+ LG + G G PR GPP
Sbjct: 167 PGPPGPPGLGGNFAAQMAGGFDEKAGGAQ-LGVMQGPMGPM-----------GPR-GPP- 212
Query: 119 GAVGAAGAQDF---------------LNPR-----PLWPNLDLPGLRPGKITASARPSSQ 158
G GA G Q F + PR P P D +PGK P Q
Sbjct: 213 GPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 272
Query: 159 ALQ-FANSRVSLGT--HRIGEGVGGEKRQ--------EAGSPGWN--PGLGLARLGSYST 205
+ F + G HR G+ G K + E+GSPG N PG R
Sbjct: 273 GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER 332
Query: 206 VCLAPELAFGLGGVLRVSGPATPELAL--------------RSRAVTPPSLGGGGDRGEN 251
P A G G GPA P + + A + G G +G
Sbjct: 333 GRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR 392
Query: 252 REEGRDLCLGPVAKKPDPRALAI-SSRGAAASPCLQVAQQSFLELGAQKTPGGGKNLGPR 310
E G GP +P I ++G+A +P + A G G LGP+
Sbjct: 393 GEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK 452
Query: 311 LCGKSP-----RGSQTARS----SSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAV 361
P +G Q + + P A P + RG A G+GP+ PP
Sbjct: 453 GQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRG-ARGEPGGVGPIGPP----- 506
Query: 362 SASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGE--RLGPRGTRRAR 419
G G + P GLA P + R G A GA G+ R G G AR
Sbjct: 507 --GERGAPGNRGFPGQD----GLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGAR 560
Query: 420 GLQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLG 456
GL RP + + P+ + + RP G + G
Sbjct: 561 GLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 597
Score = 31.2 bits (69), Expect = 2.1
Identities = 53/207 (25%), Positives = 66/207 (31%), Gaps = 34/207 (16%)
Query: 243 GGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKTPG 302
G G G E G GP +K +P S P Q+ + L Q+
Sbjct: 933 GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGER 992
Query: 303 GGKNL-GPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAV 361
G L GP S P + APG RGP GPV PP
Sbjct: 993 GFPGLPGP--------------SGEPGKQGAPG-ASGDRGPP-------GPVGPPGLTGP 1030
Query: 362 SASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGER-----LGPRGTR 416
+ G P ++G+ + D R GA PGA G GP G +
Sbjct: 1031 AGEPGREGSPGADGPPGRDGAAGVKGD-----RGETGAVGAPGAPGPPGSPGPAGPTGKQ 1085
Query: 417 RARG-LQLRPVGGQSRREAAPACSGPQ 442
RG + G S A GPQ
Sbjct: 1086 GDRGEAGAQGPMGPSGPAGARGIQGPQ 1112
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 44.7 bits (104), Expect = 2e-04
Identities = 122/463 (26%), Positives = 150/463 (32%), Gaps = 95/463 (20%)
Query: 58 QPWPPSPGRRLNRPAAVREPGPSPSSGLAEKLG--AVAGKKGVFLLIFARLLTFAAPRLG 115
+P PP P +P + PGP ++G K G + G G+ L T AA G
Sbjct: 517 RPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 576
Query: 116 P-----PRGAVGAAGAQDFLN-PRPLWPNLDLPGLRPGKITASARPSSQAL-------QF 162
P RG GA G F P P P G +PG + L F
Sbjct: 577 PAGPAGERGEQGAPGPSGFQGLPGP--PGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGF 634
Query: 163 ANSRVSLGTHRI--------GEGVGGEKRQE--AGSPGWNPGLGLARL-GSYSTVCLA-- 209
R S G + G G K AG PG GL + G +A
Sbjct: 635 PGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGP 694
Query: 210 -----------PELAFGLGGVLRVSGPATPELALRSRA----VTPPS-LGGGGDRGENRE 253
PE A G G ++GP P + V PP G G RG E
Sbjct: 695 KGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGE 754
Query: 254 EGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKTPGGGKNLGPRLCG 313
G GP P P A GA P + Q + G PG
Sbjct: 755 RGE---TGP----PGPAGFA-GPPGADGQPGAKGEQGEAGQKGDAGAPG----------- 795
Query: 314 KSPRGSQTARS-SSPSRAWAPGWRQLGRGP--ATPMLHGLGPVPPPLWAAVSASRWGGGG 370
P+G A P+ P + +GP AT G V PP S G
Sbjct: 796 --PQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP------GSNGNPGP 847
Query: 371 PQPLPQVSKEGSGLARPDPSCCVRAG----LGAAKTPGAQGE-----------RLGPRGT 415
P P K+G AR D RAG G A PG +GE GP+G
Sbjct: 848 PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 907
Query: 416 RRARGLQLRPVGGQSRREAAPACSGP--QPCRPHGTGAASSLG 456
RG+ P GQ P GP +P + GA+ G
Sbjct: 908 AGQRGIVGLP--GQRGERGFPGLPGPSGEPGKQGAPGASGDRG 948
Score = 43.9 bits (102), Expect = 3e-04
Identities = 118/457 (25%), Positives = 154/457 (33%), Gaps = 85/457 (18%)
Query: 59 PWPPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPR 118
P PP P AA G +G A+ LG + G G PR GPP
Sbjct: 98 PGPPGPPGLGGNFAAQMAGGFDEKAGGAQ-LGVMQGPMGPM-----------GPR-GPP- 143
Query: 119 GAVGAAGAQDF---------------LNPR-----PLWPNLDLPGLRPGKITASARPSSQ 158
G GA G Q F + PR P P D +PGK P Q
Sbjct: 144 GPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 203
Query: 159 ALQ-FANSRVSLGT--HRIGEGVGGEKRQ--------EAGSPGWN--PGLGLARLGSYST 205
+ F + G HR G+ G K + E+GSPG N PG R
Sbjct: 204 GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER 263
Query: 206 VCLAPELAFGLGGVLRVSGPATPELAL--------------RSRAVTPPSLGGGGDRGEN 251
P A G G GPA P + + A + G G +G
Sbjct: 264 GRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR 323
Query: 252 REEGRDLCLGPVAKKPDPRALAI-SSRGAAASPCLQVAQQSFLELGAQKTPGGGKNLGPR 310
E G GP +P I ++G+A +P + A G G LGP+
Sbjct: 324 GEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK 383
Query: 311 LCGKSP-----RGSQTARS----SSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAV 361
P +G Q + + P A P + RG A G+GP+ PP
Sbjct: 384 GQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRG-ARGEPGGVGPIGPP----- 437
Query: 362 SASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGE--RLGPRGTRRAR 419
G G + P GLA P + R G A GA G+ R G G AR
Sbjct: 438 --GERGAPGNRGFPGQD----GLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGAR 491
Query: 420 GLQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLG 456
GL RP + + P+ + + RP G + G
Sbjct: 492 GLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 528
Score = 31.2 bits (69), Expect = 2.1
Identities = 53/207 (25%), Positives = 66/207 (31%), Gaps = 34/207 (16%)
Query: 243 GGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKTPG 302
G G G E G GP +K +P S P Q+ + L Q+
Sbjct: 864 GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGER 923
Query: 303 GGKNL-GPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAV 361
G L GP S P + APG RGP GPV PP
Sbjct: 924 GFPGLPGP--------------SGEPGKQGAPG-ASGDRGPP-------GPVGPPGLTGP 961
Query: 362 SASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGER-----LGPRGTR 416
+ G P ++G+ + D R GA PGA G GP G +
Sbjct: 962 AGEPGREGSPGADGPPGRDGAAGVKGD-----RGETGAVGAPGAPGPPGSPGPAGPTGKQ 1016
Query: 417 RARG-LQLRPVGGQSRREAAPACSGPQ 442
RG + G S A GPQ
Sbjct: 1017 GDRGEAGAQGPMGPSGPAGARGIQGPQ 1043
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 44.7 bits (104), Expect = 2e-04
Identities = 94/362 (25%), Positives = 126/362 (34%), Gaps = 44/362 (12%)
Query: 76 EPGPSPSSGLAEKLG--AVAGKKGVFLLIFARLLTFAAPRLGPP----RGAVGAAGAQDF 129
+PGP + GLA G +G KG GPP G GA G
Sbjct: 2184 DPGPPGAPGLAGPAGPQGPSGLKG------------EPGETGPPGRGLTGPTGAVGLPGP 2231
Query: 130 LNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGGEKRQEA--- 186
P L PGL PG++ + +P + A+ + R GV G
Sbjct: 2232 PGPSGLVGPQGSPGL-PGQVGETGKPGAPGRDGASGKDG---DRGSPGVPGSPGLPGPVG 2287
Query: 187 --GSPGWN--PGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPPSL 242
G PG PG + L AP GL G L A + L
Sbjct: 2288 PKGEPGPTGAPGQAVVGLPGAKGEKGAPG---GLAGDLVGEPGAKGDRGLPGPRGEKGEA 2344
Query: 243 GGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKTPG 302
G G+ G+ E+G+ GP K DP S G P ++ +LG PG
Sbjct: 2345 GRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKG------DLGLPGLPG 2398
Query: 303 GGKNLG-PRLCGKSPRGSQTARSSSPSRAWA-PGWRQLGRGPATPMLHGLGPVPPPLWAA 360
+G P G PRG S R A P R+ GP P G V PP +
Sbjct: 2399 APGVVGFPGQTG--PRGEMGQPGPSGERGLAGPPGREGIPGPLGPP-GPPGSVGPPGASG 2455
Query: 361 VSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARG 420
+ + G P P+ + G+ D G PG++GER G +G + G
Sbjct: 2456 LKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGER-GEKGDVGSAG 2514
Query: 421 LQ 422
L+
Sbjct: 2515 LK 2516
Score = 35.8 bits (81), Expect = 0.084
Identities = 80/294 (27%), Positives = 103/294 (35%), Gaps = 57/294 (19%)
Query: 177 GVGGEK--RQEAGSPGWN--PGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELAL 232
G GE+ + + G PG PGL L G P GL G P P L
Sbjct: 1997 GFPGERGLKGDRGDPGPQGPPGLALGERG--------PPGPSGLAG--EPGKPGIPGLPG 2046
Query: 233 RSRAV----TPPSLGGGGDRGENREEGRDLCLG----PVAKKPDPRALAISSRGAAASPC 284
R+ V P G G++GE E+GRD G P P +++ G P
Sbjct: 2047 RAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPG----PG 2102
Query: 285 LQVAQQSFLELGAQKTPGGGKNLGPR----LCG-KSPRGSQTARSSSPSRAWAPGWRQLG 339
L Q GA+ PG + GP+ + G K RG R PG R +
Sbjct: 2103 LSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQD-GNPGLPGERGMA 2161
Query: 340 RGPATPMLHG----LGPV-----PPPLWAAVSASRWGGGGPQPLP----QVSKEGSGLAR 386
P L G GPV P P A A G GP L + G GL
Sbjct: 2162 GPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTG 2221
Query: 387 PDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARGLQLRPVGGQSRREAAPACSG 440
P +G PG G +GP+G+ G G++ + AP G
Sbjct: 2222 P------TGAVGLPGPPGPSG-LVGPQGSPGLPGQV-----GETGKPGAPGRDG 2263
>gi|169169912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 43.5 bits (101), Expect = 4e-04
Identities = 51/156 (32%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 309 PRLCGKSPRG---SQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSASR 365
P G+ RG S T R+ + A W L GP G G VP P A V A
Sbjct: 19 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 78
Query: 366 WGG--GGPQPLPQVSKEGSGLARPD--PSCCVRAGLGAAKTPGAQGERLGPRGTRRARGL 421
W G G +P S G P P+C RA LG+A++PG G G RA
Sbjct: 79 WQGHLGRAARVPCASHTHVGGPGPQAGPACGFRA-LGSAQSPG-PATAAGAPGFSRALSP 136
Query: 422 QLRPVGGQSRREAAPACSGP-QPCRPHGTGAASSLG 456
P G + AAP P Q G+G + S+G
Sbjct: 137 GPVPPGWR----AAPRAGAPHQRAAATGSGGSRSVG 168
>gi|239749005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 43.5 bits (101), Expect = 4e-04
Identities = 51/156 (32%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 309 PRLCGKSPRG---SQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSASR 365
P G+ RG S T R+ + A W L GP G G VP P A V A
Sbjct: 13 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 72
Query: 366 WGG--GGPQPLPQVSKEGSGLARPD--PSCCVRAGLGAAKTPGAQGERLGPRGTRRARGL 421
W G G +P S G P P+C RA LG+A++PG G G RA
Sbjct: 73 WQGHLGRAARVPCASHTHVGGPGPQAGPACGFRA-LGSAQSPG-PATAAGAPGFSRALSP 130
Query: 422 QLRPVGGQSRREAAPACSGP-QPCRPHGTGAASSLG 456
P G + AAP P Q G+G + S+G
Sbjct: 131 GPVPPGWR----AAPRAGAPHQRAAATGSGGSRSVG 162
>gi|239743025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 43.5 bits (101), Expect = 4e-04
Identities = 51/156 (32%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 309 PRLCGKSPRG---SQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSASR 365
P G+ RG S T R+ + A W L GP G G VP P A V A
Sbjct: 13 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 72
Query: 366 WGG--GGPQPLPQVSKEGSGLARPD--PSCCVRAGLGAAKTPGAQGERLGPRGTRRARGL 421
W G G +P S G P P+C RA LG+A++PG G G RA
Sbjct: 73 WQGHLGRAARVPCASHTHVGGPGPQAGPACGFRA-LGSAQSPG-PATAAGAPGFSRALSP 130
Query: 422 QLRPVGGQSRREAAPACSGP-QPCRPHGTGAASSLG 456
P G + AAP P Q G+G + S+G
Sbjct: 131 GPVPPGWR----AAPRAGAPHQRAAATGSGGSRSVG 162
>gi|239757701 PREDICTED: hypothetical protein XP_002345525 [Homo
sapiens]
Length = 180
Score = 43.1 bits (100), Expect = 5e-04
Identities = 47/163 (28%), Positives = 65/163 (39%), Gaps = 29/163 (17%)
Query: 313 GKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSASRWGGG-GP 371
G RG+ A P+ WA R++ G GP PP L AA + G G GP
Sbjct: 23 GMGHRGAMLAVEHPPAGGWARA-REVSPGSGRTACSQCGPTPPALQAAGCPAPPGTGRGP 81
Query: 372 QPLPQVSK-------EGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARGLQLR 424
Q P +S+ GS L + AA A G+ +G ++++ LR
Sbjct: 82 QRSPPISRMLDTNLLSGSSLQQM-----------AASGKKAGGQSVGTNFSQKS--FTLR 128
Query: 425 PVGGQSRREAAPACSGPQPCRPHGTGAASSL-------GLQDA 460
P R++ A + P CR AAS L GLQD+
Sbjct: 129 PKSSVRGRQSGSAYTCPMICRGSDARAASVLPLRVSPPGLQDS 171
>gi|239752186 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 43.1 bits (100), Expect = 5e-04
Identities = 47/163 (28%), Positives = 65/163 (39%), Gaps = 29/163 (17%)
Query: 313 GKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSASRWGGG-GP 371
G RG+ A P+ WA R++ G GP PP L AA + G G GP
Sbjct: 23 GMGHRGAMLAVEHPPAGGWARA-REVSPGSGRTACSQCGPTPPALQAAGCPAPPGTGRGP 81
Query: 372 QPLPQVSK-------EGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARGLQLR 424
Q P +S+ GS L + AA A G+ +G ++++ LR
Sbjct: 82 QRSPPISRMLDTNLLSGSSLQQM-----------AASGKKAGGQSVGTNFSQKS--FTLR 128
Query: 425 PVGGQSRREAAPACSGPQPCRPHGTGAASSL-------GLQDA 460
P R++ A + P CR AAS L GLQD+
Sbjct: 129 PKSSVRGRQSGSAYTCPMICRGSDARAASVLPLRVSPPGLQDS 171
>gi|239746709 PREDICTED: hypothetical protein XP_002343816 [Homo
sapiens]
Length = 180
Score = 43.1 bits (100), Expect = 5e-04
Identities = 47/163 (28%), Positives = 65/163 (39%), Gaps = 29/163 (17%)
Query: 313 GKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSASRWGGG-GP 371
G RG+ A P+ WA R++ G GP PP L AA + G G GP
Sbjct: 23 GMGHRGAMLAVEHPPAGGWARA-REVSPGSGRTACSQCGPTPPALQAAGCPAPPGTGRGP 81
Query: 372 QPLPQVSK-------EGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARGLQLR 424
Q P +S+ GS L + AA A G+ +G ++++ LR
Sbjct: 82 QRSPPISRMLDTNLLSGSSLQQM-----------AASGKKAGGQSVGTNFSQKS--FTLR 128
Query: 425 PVGGQSRREAAPACSGPQPCRPHGTGAASSL-------GLQDA 460
P R++ A + P CR AAS L GLQD+
Sbjct: 129 PKSSVRGRQSGSAYTCPMICRGSDARAASVLPLRVSPPGLQDS 171
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 42.0 bits (97), Expect = 0.001
Identities = 110/427 (25%), Positives = 143/427 (33%), Gaps = 74/427 (17%)
Query: 59 PWPP----SPGRRL-----NRPAAVREPGPSPSSGLAEKLG--AVAGKKGVFLLIFARLL 107
P PP SPG R R + PG +SG A G AG+ G L+ R L
Sbjct: 393 PGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGL 452
Query: 108 TFAAPRLGPP--RGAVGAAGAQDFLNPRPLWP--------NLDLPGLRPGKITASARPSS 157
+ +GP G VG G P P+ P N+ PG +
Sbjct: 453 PGSPGNIGPAGKEGPVGLPGIDG--RPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDK 510
Query: 158 QALQFANSRVSLGTHRIG--------EGVGGEKRQEA--GSPGWNPGLGLARLGSYSTVC 207
A +R + G +GV G K ++ G PG+ G + G V
Sbjct: 511 GHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPS--GPAGEVG 568
Query: 208 LAPELAFGLGGVLRVSGPATPELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKP 267
E GL G + GPA P R P G G G G GP K
Sbjct: 569 KPGER--GLHGEFGLPGPAGP----RGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKG 622
Query: 268 DPRAL-AISSRGAAASPCLQVAQQSFLELGAQKTPGG-GKNLGPRLCGKSPRGSQTARSS 325
+P + A+ + G + L E GA PGG G+ P L G+ +
Sbjct: 623 EPGVVGAVGTAGPSGPSGLPG------ERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARG 676
Query: 326 SPSRAWAPGWRQLGRGPATPMLHGLGPVPP--PLWAAVSASRWGGGGPQPLPQVSKEGSG 383
+P APG G GP P P + G GP +G
Sbjct: 677 APGAVGAPG--PAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGP----------NG 724
Query: 384 LARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARGLQLRPVGGQSRREAAPACSGPQP 443
A P GAA PGA+GER G +G + G+ + P G A P P
Sbjct: 725 FAGP---------AGAAGQPGAKGER-GAKGPKGENGV-VGPTGPVGAAGPAGPNGPPGP 773
Query: 444 CRPHGTG 450
G G
Sbjct: 774 AGSRGDG 780
Score = 40.4 bits (93), Expect = 0.003
Identities = 109/383 (28%), Positives = 131/383 (34%), Gaps = 86/383 (22%)
Query: 61 PPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPR--LGPPR 118
PP P P PGPS +G K G G G F L A PR GPP
Sbjct: 548 PPGP------PGFQGLPGPSGPAGEVGKPGE-RGLHGEFGLPGP-----AGPRGERGPP- 594
Query: 119 GAVGAAGAQDFLNPRPLW--PNLDLPGLRPGKITA--SARPSSQALQFANSRVSLGTHRI 174
G GAAG + R P D PG + A +A PS + L R
Sbjct: 595 GESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPS--------GLPGERG 646
Query: 175 GEGVGGEKRQEAGSPGW-----NPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPE 229
G+ G K E G PG NPG AR + P A G G +GPA P
Sbjct: 647 AAGIPGGKG-EKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPA 705
Query: 230 LALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQ 289
G G+RGE G + GP GAA P +
Sbjct: 706 ----------GPRGSPGERGEVGPAGPNGFAGPA--------------GAAGQPGAKG-- 739
Query: 290 QSFLELGAQKTPGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPA--TPML 347
E GA+ G +GP P G+ A + P+ P + GP T
Sbjct: 740 ----ERGAKGPKGENGVVGPT----GPVGA--AGPAGPNGPPGPAGSRGDGGPPGMTGFP 789
Query: 348 HGLGPVPPPLWAAVSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAG-LGAAKTPGAQ 406
G PP + +S G P P KEG R D R G +GA PG
Sbjct: 790 GAAGRTGPPGPSGIS------GPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFA 843
Query: 407 GER--------LGPRGTRRARGL 421
GE+ GP GT +GL
Sbjct: 844 GEKGPSGEAGTAGPPGTPGPQGL 866
Score = 33.5 bits (75), Expect = 0.42
Identities = 106/420 (25%), Positives = 136/420 (32%), Gaps = 83/420 (19%)
Query: 64 PGRRLNRPAAVREPGPSPSSGLAEKLGAV--------AGKKGVFLLIFARLLTFAAPRLG 115
PG R V PGP+ + G +G V AG G P
Sbjct: 219 PGER----GRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGF-------------PGAP 261
Query: 116 PPRGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRIG 175
P+G +GA G P + LPGL G + P + L A L
Sbjct: 262 GPKGEIGAVGNAGPAGPAGPRGEVGLPGL-SGPVGPPGNPGANGLTGAKGAAGLPGVAGA 320
Query: 176 EGVGGEKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSR 235
G+ G + G PG G A G G++ GPA + ++
Sbjct: 321 PGLPGPR----GIPGPVGAAG----------------ATGARGLVGEPGPAGSKGESGNK 360
Query: 236 AVTPPSLGGGGDRGENREEGRDLCLGPV--AKKPDPRALAISSRGAAASPCLQVAQQSFL 293
P S G G G + EEG+ G A P P L RG+ S L A
Sbjct: 361 G-EPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGL----RGSPGSRGLPGADG--- 412
Query: 294 ELGAQKTPGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPAT--------P 345
G PG GP + P G + P G R L P P
Sbjct: 413 RAGVMGPPGSRGASGPAGV-RGPNGD----AGRPGEPGLMGPRGLPGSPGNIGPAGKEGP 467
Query: 346 M-LHGLGPVPPPLWAAVSASRWGG-GGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTP 403
+ L G+ P P+ A + G G P P G D AG A P
Sbjct: 468 VGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGK---NGDKGHAGLAGARGAPGP 524
Query: 404 ----GAQGERLGPRGTRRARGLQLRPVGGQSRREAAPACSGP--QPCRPHGTGAASSLGL 457
GAQG GP+G + +G Q P G + P SGP + +P G GL
Sbjct: 525 DGNNGAQGPP-GPQGVQGGKGEQGPP--GPPGFQGLPGPSGPAGEVGKPGERGLHGEFGL 581
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 42.0 bits (97), Expect = 0.001
Identities = 79/293 (26%), Positives = 102/293 (34%), Gaps = 78/293 (26%)
Query: 232 LRSRAVTPPSLGGG--------GDRGENREEGRDLCLGPVAK-----KPDPRALA--ISS 276
LRSR T P+ G G G GE G + PV+ +PDP L +
Sbjct: 96 LRSR--TDPAFGAGPLPLVSRLGHAGERGSPGAG-DVNPVSASSPPGRPDPLLLTTFVFP 152
Query: 277 RGAAASPCLQVAQQSFLELGAQKTPGGGKNLGPRLCGKSPRGSQTAR-SSSPSRA-WAP- 333
G ++P + LGA + G L PRL + PRG Q+AR + + SRA WA
Sbjct: 153 PGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRL--QEPRGHQSARRTDTASRAGWATR 210
Query: 334 -------------GWRQL---------------------------GRGPATPMLHGLGPV 353
G R+L GRGP + + G V
Sbjct: 211 RAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGV 270
Query: 354 PPPLWAAVSASRWGGGGPQPLPQVSKEGSGLARP-----DPSCCVRAGLGAAKTPGAQGE 408
PP W S R G G + PQV + GS ARP P+ A
Sbjct: 271 EPPGW---SRERAGAGLSRDSPQVPRSGS-WARPCREQGHPAVLALQSPAPPSLARAAAR 326
Query: 409 RLGPRGTRRARGLQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLGLQDAD 461
R GP G + L + R P P P A + GL+D D
Sbjct: 327 RRGPGGATEPGFVTL------AFRSRLPLLRSPGPEGTSDAARAPAPGLRDRD 373
Score = 35.0 bits (79), Expect = 0.14
Identities = 76/291 (26%), Positives = 96/291 (32%), Gaps = 68/291 (23%)
Query: 185 EAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPPSLGG 244
EA W G + GS + L+P + G R P RA P G
Sbjct: 21 EARPGDWERRAGSSLCGSAEALLLSPHVT---GAAQRSPTPG--------RARAAPQQGD 69
Query: 245 GGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKTPGGG 304
GG R RE LG + PR + SR A GA P
Sbjct: 70 GGAR---RERAAAESLGTQSATLGPRRGGLRSRTDPA-------------FGAGPLP--- 110
Query: 305 KNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSAS 364
L RL RGS A +P A +P G P+L PP SA
Sbjct: 111 --LVSRLGHAGERGSPGAGDVNPVSASSPP------GRPDPLLLTTFVFPP---GKTSAP 159
Query: 365 RWGGGGPQPLPQVSKEGSGL-----------------ARPDPSCCVRAGLGAAKTPGAQG 407
R GG + P + G+GL R D + RAG + P +
Sbjct: 160 RPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTAS--RAGWATRRAPSRRR 217
Query: 408 ERLGPRGTRRAR---GLQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSL 455
PRG+RR R G GG+ +R A G + +G G S L
Sbjct: 218 NFGAPRGSRRLRPDAGKFPEASGGKGQRAA-----GAERVLNNGRGPRSRL 263
Score = 29.6 bits (65), Expect = 6.0
Identities = 58/233 (24%), Positives = 77/233 (33%), Gaps = 42/233 (18%)
Query: 71 PAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPRGAVGAAGAQDFL 130
P P PSP LGA G L +PRL PRG A
Sbjct: 153 PGKTSAPRPSPGGRRGRPLGAARG---------TGLNPGLSPRLQEPRGHQSARRTD--T 201
Query: 131 NPRPLWPNLDLPGLRP--GKITASARPSSQALQF-----ANSRVSLGTHRIGEGVGGEKR 183
R W P R G S R A +F + + G R+ G +
Sbjct: 202 ASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRS 261
Query: 184 QEAG------SPGWN---PGLGLA-------RLGSYSTVCLAPELAFGLGGVLRVSGPAT 227
+ G PGW+ G GL+ R GS++ C G VL + PA
Sbjct: 262 RLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQ----GHPAVLALQSPAP 317
Query: 228 PELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAA 280
P LA + P GG + G R P+ + P P + ++R A
Sbjct: 318 PSLARAAARRRGP--GGATEPGFVTLAFRSRL--PLLRSPGPEGTSDAARAPA 366
>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 42.0 bits (97), Expect = 0.001
Identities = 79/293 (26%), Positives = 102/293 (34%), Gaps = 78/293 (26%)
Query: 232 LRSRAVTPPSLGGG--------GDRGENREEGRDLCLGPVAK-----KPDPRALA--ISS 276
LRSR T P+ G G G GE G + PV+ +PDP L +
Sbjct: 96 LRSR--TDPAFGAGPLPLVSRLGHAGERGSPGAG-DVNPVSASSPPGRPDPLLLTTFVFP 152
Query: 277 RGAAASPCLQVAQQSFLELGAQKTPGGGKNLGPRLCGKSPRGSQTAR-SSSPSRA-WAP- 333
G ++P + LGA + G L PRL + PRG Q+AR + + SRA WA
Sbjct: 153 PGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRL--QEPRGHQSARRTDTASRAGWATR 210
Query: 334 -------------GWRQL---------------------------GRGPATPMLHGLGPV 353
G R+L GRGP + + G V
Sbjct: 211 RAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLDNGRGPRSRLPGLAGGV 270
Query: 354 PPPLWAAVSASRWGGGGPQPLPQVSKEGSGLARP-----DPSCCVRAGLGAAKTPGAQGE 408
PP W S R G G + PQV + GS ARP P+ A
Sbjct: 271 EPPGW---SRERAGAGLSRDSPQVPRSGS-WARPCREQGHPAVLALQSPAPPSLARAAAR 326
Query: 409 RLGPRGTRRARGLQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLGLQDAD 461
R GP G + L + R P P P A + GL+D D
Sbjct: 327 RRGPGGATEPGFVTL------AFRSRLPLLRSPGPEGTSDAARAPAPGLRDRD 373
Score = 35.4 bits (80), Expect = 0.11
Identities = 76/291 (26%), Positives = 96/291 (32%), Gaps = 68/291 (23%)
Query: 185 EAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPPSLGG 244
EA W G + GS + L+P + G R P RA P G
Sbjct: 21 EARPGDWERRAGSSLCGSAEALLLSPHVT---GAAQRSPTPG--------RARAAPQQGD 69
Query: 245 GGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKTPGGG 304
GG R RE LG + PR + SR A GA P
Sbjct: 70 GGAR---RERAAAESLGTQSATLGPRRGGLRSRTDPA-------------FGAGPLP--- 110
Query: 305 KNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSAS 364
L RL RGS A +P A +P G P+L PP SA
Sbjct: 111 --LVSRLGHAGERGSPGAGDVNPVSASSPP------GRPDPLLLTTFVFPP---GKTSAP 159
Query: 365 RWGGGGPQPLPQVSKEGSGL-----------------ARPDPSCCVRAGLGAAKTPGAQG 407
R GG + P + G+GL R D + RAG + P +
Sbjct: 160 RPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTAS--RAGWATRRAPSRRR 217
Query: 408 ERLGPRGTRRAR---GLQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSL 455
PRG+RR R G GG+ +R A G + +G G S L
Sbjct: 218 NFGAPRGSRRLRPDAGKFPEASGGKGQRAA-----GAERVLDNGRGPRSRL 263
Score = 30.4 bits (67), Expect = 3.5
Identities = 58/233 (24%), Positives = 78/233 (33%), Gaps = 42/233 (18%)
Query: 71 PAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPRGAVGAAGAQDFL 130
P P PSP LGA G L +PRL PRG A
Sbjct: 153 PGKTSAPRPSPGGRRGRPLGAARG---------TGLNPGLSPRLQEPRGHQSARRTD--T 201
Query: 131 NPRPLWPNLDLPGLRP--GKITASARPSSQALQF-----ANSRVSLGTHRIGEGVGGEKR 183
R W P R G S R A +F + + G R+ + G +
Sbjct: 202 ASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLDNGRGPRS 261
Query: 184 QEAG------SPGWN---PGLGLA-------RLGSYSTVCLAPELAFGLGGVLRVSGPAT 227
+ G PGW+ G GL+ R GS++ C G VL + PA
Sbjct: 262 RLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQ----GHPAVLALQSPAP 317
Query: 228 PELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAA 280
P LA + P GG + G R P+ + P P + ++R A
Sbjct: 318 PSLARAAARRRGP--GGATEPGFVTLAFRSRL--PLLRSPGPEGTSDAARAPA 366
>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 42.0 bits (97), Expect = 0.001
Identities = 79/293 (26%), Positives = 102/293 (34%), Gaps = 78/293 (26%)
Query: 232 LRSRAVTPPSLGGG--------GDRGENREEGRDLCLGPVAK-----KPDPRALA--ISS 276
LRSR T P+ G G G GE G + PV+ +PDP L +
Sbjct: 96 LRSR--TDPAFGAGPLPLVSRLGHAGERGSPGAG-DVNPVSASSPPGRPDPLLLTTFVFP 152
Query: 277 RGAAASPCLQVAQQSFLELGAQKTPGGGKNLGPRLCGKSPRGSQTAR-SSSPSRA-WAP- 333
G ++P + LGA + G L PRL + PRG Q+AR + + SRA WA
Sbjct: 153 PGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRL--QEPRGHQSARRTDTASRAGWATR 210
Query: 334 -------------GWRQL---------------------------GRGPATPMLHGLGPV 353
G R+L GRGP + + G V
Sbjct: 211 RAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLDNGRGPRSRLPGLAGGV 270
Query: 354 PPPLWAAVSASRWGGGGPQPLPQVSKEGSGLARP-----DPSCCVRAGLGAAKTPGAQGE 408
PP W S R G G + PQV + GS ARP P+ A
Sbjct: 271 EPPGW---SRERAGAGLSRDSPQVPRSGS-WARPCREQGHPAVLALQSPAPPSLARAAAR 326
Query: 409 RLGPRGTRRARGLQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLGLQDAD 461
R GP G + L + R P P P A + GL+D D
Sbjct: 327 RRGPGGATEPGFVTL------AFRSRLPLLRSPGPEGTSDAARAPAPGLRDRD 373
Score = 35.4 bits (80), Expect = 0.11
Identities = 76/291 (26%), Positives = 96/291 (32%), Gaps = 68/291 (23%)
Query: 185 EAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPPSLGG 244
EA W G + GS + L+P + G R P RA P G
Sbjct: 21 EARPGDWERRAGSSLCGSAEALLLSPHVT---GAAQRSPTPG--------RARAAPQQGD 69
Query: 245 GGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKTPGGG 304
GG R RE LG + PR + SR A GA P
Sbjct: 70 GGAR---RERAAAESLGTQSATLGPRRGGLRSRTDPA-------------FGAGPLP--- 110
Query: 305 KNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSAS 364
L RL RGS A +P A +P G P+L PP SA
Sbjct: 111 --LVSRLGHAGERGSPGAGDVNPVSASSPP------GRPDPLLLTTFVFPP---GKTSAP 159
Query: 365 RWGGGGPQPLPQVSKEGSGL-----------------ARPDPSCCVRAGLGAAKTPGAQG 407
R GG + P + G+GL R D + RAG + P +
Sbjct: 160 RPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTAS--RAGWATRRAPSRRR 217
Query: 408 ERLGPRGTRRAR---GLQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSL 455
PRG+RR R G GG+ +R A G + +G G S L
Sbjct: 218 NFGAPRGSRRLRPDAGKFPEASGGKGQRAA-----GAERVLDNGRGPRSRL 263
Score = 30.4 bits (67), Expect = 3.5
Identities = 58/233 (24%), Positives = 78/233 (33%), Gaps = 42/233 (18%)
Query: 71 PAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPRGAVGAAGAQDFL 130
P P PSP LGA G L +PRL PRG A
Sbjct: 153 PGKTSAPRPSPGGRRGRPLGAARG---------TGLNPGLSPRLQEPRGHQSARRTD--T 201
Query: 131 NPRPLWPNLDLPGLRP--GKITASARPSSQALQF-----ANSRVSLGTHRIGEGVGGEKR 183
R W P R G S R A +F + + G R+ + G +
Sbjct: 202 ASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLDNGRGPRS 261
Query: 184 QEAG------SPGWN---PGLGLA-------RLGSYSTVCLAPELAFGLGGVLRVSGPAT 227
+ G PGW+ G GL+ R GS++ C G VL + PA
Sbjct: 262 RLPGLAGGVEPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQ----GHPAVLALQSPAP 317
Query: 228 PELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAA 280
P LA + P GG + G R P+ + P P + ++R A
Sbjct: 318 PSLARAAARRRGP--GGATEPGFVTLAFRSRL--PLLRSPGPEGTSDAARAPA 366
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 41.6 bits (96), Expect = 0.002
Identities = 70/281 (24%), Positives = 103/281 (36%), Gaps = 22/281 (7%)
Query: 63 SPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRLGPPRGAVG 122
SP + A + G + A K A A + G+ + AP +G G VG
Sbjct: 443 SPEAQAAAAAKAAKYGVGTPAAAAAKAAAKAAQFGLVPGVGVAPGVGVAPGVGVAPG-VG 501
Query: 123 AAGAQDFLNPRPLWPNLDL-PGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGGE 181
A + P + + PG+ PG + A+A+ +++ A R + G +G G+ G
Sbjct: 502 LAPGVGVAPGVGVAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAG---LGAGIPG- 557
Query: 182 KRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPPS 241
G PG G G+ LG + G+ G V G A + A P
Sbjct: 558 LGVGVGVPGLGVGAGVPGLG----------VGAGVPGFGAVPGALAAAKAAKYGAAVPGV 607
Query: 242 LGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKTP 301
LGG G G G + GP A A A ++ AA + A L +G P
Sbjct: 608 LGGLGALGGVGIPGGVVGAGPAA----AAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVP 663
Query: 302 GGG--KNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGR 340
G G + P K+ + AR PG LG+
Sbjct: 664 GVGGLGGIPPAAAAKAAKYGVAARPGFGLSPIFPGGACLGK 704
Score = 31.6 bits (70), Expect = 1.6
Identities = 102/413 (24%), Positives = 139/413 (33%), Gaps = 71/413 (17%)
Query: 61 PPSPGRRLNRPAAVREPGPSPSSGLAEKL--GAVAGKK--GVFLLIFARLLTFAAPRLGP 116
P PG + +P A +PG P GL G + G + GV +L P+
Sbjct: 127 PSVPGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGVKPKAPG 186
Query: 117 PRGA-VGAAGAQDFLNPRPLWP------------NLDLP--------GLRPGKITASA-- 153
GA G G F P+P P LP G PG + +A
Sbjct: 187 VGGAFAGIPGVGPFGGPQPGVPLGYPIKAPKLPGGYGLPYTTGKLPYGYGPGGVAGAAGK 246
Query: 154 ---------RPSSQALQFANSRVSLGTHRIG--EGVGGEKRQEAGSPGWNPGL-GLARLG 201
P + A A + G G GVGG G PG PG+ G+A +G
Sbjct: 247 AGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGG--AGVPGVPGAIPGIGGIAGVG 304
Query: 202 SYSTVCLAPELA----FGLGGVLRVSGPATPELALRSRAVTPPSLGGGGDRGENREEGRD 257
+ + A A +G L GP + P +G G G G
Sbjct: 305 TPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPG-AGIPVVPGAG 363
Query: 258 LCLGPVAKKPDPRALAISSRGAA---ASPCLQVAQQSFLELGAQKTPGGGKNLGPRLCGK 314
+ V P A A ++ AA A P + V +GA PG G +G
Sbjct: 364 IPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGVGVG------ 417
Query: 315 SPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVP-PPLWAAVSASRWGGGGPQP 373
P A PG +G P + G+G P AA A+++G G P
Sbjct: 418 ----------GIPGVAGVPG---VGGVPGVGGVPGVGISPEAQAAAAAKAAKYGVGTPAA 464
Query: 374 LPQVSKEGSGLARPDPSCCVRAGLGAAKTPG-AQGERLGPRGTRRARGLQLRP 425
+ + P V G+G A G A G L P G A G+ + P
Sbjct: 465 AAAKAAAKAAQFGLVPGVGVAPGVGVAPGVGVAPGVGLAP-GVGVAPGVGVAP 516
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 41.2 bits (95), Expect = 0.002
Identities = 53/201 (26%), Positives = 76/201 (37%), Gaps = 20/201 (9%)
Query: 142 PGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGGEKRQEAGSPGWNPGLGLARLG 201
PG+ PG + A+A+ +++ A R + G +G G+ G G PG G G+ LG
Sbjct: 503 PGIGPGGVAAAAKSAAKVAAKAQLRAAAG---LGAGIPG-LGVGVGVPGLGVGAGVPGLG 558
Query: 202 SYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPPSLGGGGDRGENREEGRDLCLG 261
+ G+ G V G A + A P LGG G G G + G
Sbjct: 559 ----------VGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVVGAG 608
Query: 262 PVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKTPGGG--KNLGPRLCGKSPRGS 319
P A A A ++ AA + A L +G PG G + P K+ +
Sbjct: 609 PAA----AAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGVGGLGGIPPAAAAKAAKYG 664
Query: 320 QTARSSSPSRAWAPGWRQLGR 340
AR PG LG+
Sbjct: 665 VAARPGFGLSPIFPGGACLGK 685
Score = 29.6 bits (65), Expect = 6.0
Identities = 108/435 (24%), Positives = 145/435 (33%), Gaps = 81/435 (18%)
Query: 61 PPSPGRRLNRPAAVREPGPSPSSGLAEKL--GAVAGKK--GVFLLIFARLLTFAAPRLGP 116
P PG + +P A +PG P GL G + G + GV +L P+
Sbjct: 127 PSVPGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGVKPKAPG 186
Query: 117 PRGA-VGAAGAQDFLNPRPLWP------------NLDLP--------GLRPGKITASA-- 153
GA G G F P+P P LP G PG + +A
Sbjct: 187 VGGAFAGIPGVGPFGGPQPGVPLGYPIKAPKLPGGYGLPYTTGKLPYGYGPGGVAGAAGK 246
Query: 154 ---------RPSSQALQFANSRVSLGTHRIG--EGVGGEKRQEAGSPGWNPGL-GLARLG 201
P + A A + G G GVGG G PG PG+ G+A +G
Sbjct: 247 AGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGG--AGVPGVPGAIPGIGGIAGVG 304
Query: 202 SYSTVCLAPELA----FGLGGVLRVSGPATPELALRSRAVTPPSLGGGGDRGENREEGRD 257
+ + A A +G L GP + P +G G G G
Sbjct: 305 TPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPG-AGIPVVPGAG 363
Query: 258 LCLGPVAKKPDPRALAISSRGAA---ASPCLQVAQQSFLELGAQKTPGGGKNLGPRLCGK 314
+ V P A A ++ AA A P + V +GA PG G +G
Sbjct: 364 IPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGVGVG------ 417
Query: 315 SPRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVP-PPLWAAVSASRWG---GGG 370
P A PG +G P + G+G P AA A+++G G G
Sbjct: 418 ----------GIPGVAGVPG---VGGVPGVGGVPGVGISPEAQAAAAAKAAKYGLVPGVG 464
Query: 371 PQPLPQVS-----KEGSGLARPDPSCCVRAGLGAAKTPGAQGERLGPRGTRRARGLQLRP 425
P V+ G GLA P V G+G A G +GP G A +
Sbjct: 465 VAPGVGVAPGVGVAPGVGLA---PGVGVAPGVGVAPGVGV-APGIGPGGVAAAAKSAAKV 520
Query: 426 VGGQSRREAAPACSG 440
R AA +G
Sbjct: 521 AAKAQLRAAAGLGAG 535
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 41.2 bits (95), Expect = 0.002
Identities = 53/201 (26%), Positives = 76/201 (37%), Gaps = 20/201 (9%)
Query: 142 PGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGGEKRQEAGSPGWNPGLGLARLG 201
PG+ PG + A+A+ +++ A R + G +G G+ G G PG G G+ LG
Sbjct: 488 PGIGPGGVAAAAKSAAKVAAKAQLRAAAG---LGAGIPG-LGVGVGVPGLGVGAGVPGLG 543
Query: 202 SYSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPPSLGGGGDRGENREEGRDLCLG 261
+ G+ G V G A + A P LGG G G G + G
Sbjct: 544 ----------VGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVVGAG 593
Query: 262 PVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQKTPGGG--KNLGPRLCGKSPRGS 319
P A A A ++ AA + A L +G PG G + P K+ +
Sbjct: 594 PAA----AAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGVGGLGGIPPAAAAKAAKYG 649
Query: 320 QTARSSSPSRAWAPGWRQLGR 340
AR PG LG+
Sbjct: 650 VAARPGFGLSPIFPGGACLGK 670
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 41.2 bits (95), Expect = 0.002
Identities = 85/352 (24%), Positives = 122/352 (34%), Gaps = 63/352 (17%)
Query: 141 LPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGGEKRQEAGSPGWNPGLGLARL 200
+P G + + + + A A R+ G GE VG R + + G + + +
Sbjct: 499 VPATGVGGLVGAGQGAVAAAGNAPERLPAGVQGCGEEVGRGARGDRVAGGH---VEVVPV 555
Query: 201 GSYSTVCL-------APE--LAFGLGGVLR-----VSGPATPELALRSRAVTPPSL---- 242
G +C+ AP + LGG L V+ PA E R R P
Sbjct: 556 GQQLAICMLHGQLGTAPHAHVPTVLGGALGGRAGLVAAPARRECPARRRGGCWPRRPRRR 615
Query: 243 --GGGGDRGENREE----------GRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQ 290
GGGG G ++ + + P A P R G A C QVA
Sbjct: 616 HGGGGGGGGPGLQDLLGGGHAGGAHGHVVVAPAAAAPTAREGRAGRHGHVAVVCPQVAAG 675
Query: 291 S----------FLELGAQKTPGGGKNLGPRLCGKSPRGS--------QTARSSSPSRAWA 332
+ L +G G G+ G ++ R Q R R
Sbjct: 676 APVGADLDVSVVLWVGVVGHLGRGRGAGRAEAARAAREGGPHQGVFIQRGRGGLGHRP-L 734
Query: 333 PGWRQLGRGP-ATPMLHGLGPVP-PPLWAAVSASRWGGGGPQPLPQVSKEG-SGLARPDP 389
PGWR G GP A P + LG VP P A + ++ G P+ + SG R
Sbjct: 735 PGWRGQGVGPLAQPSVQVLGRVPRDPAVGAATVAQGPVHGHVPVELTAAAAVSGRGR--- 791
Query: 390 SCCVRAGLGAAKTPGAQGERLGPRGTRRARGLQLRPVGGQSRREAAPACSGP 441
+R GLG + A+G ++ G +G + GG R A GP
Sbjct: 792 ---LRDGLGRVASVAAEGAQVAWAGAVLVQGHEAGVAGG--ARGGGAAAGGP 838
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 41.2 bits (95), Expect = 0.002
Identities = 85/352 (24%), Positives = 122/352 (34%), Gaps = 63/352 (17%)
Query: 141 LPGLRPGKITASARPSSQALQFANSRVSLGTHRIGEGVGGEKRQEAGSPGWNPGLGLARL 200
+P G + + + + A A R+ G GE VG R + + G + + +
Sbjct: 499 VPATGVGGLVGAGQGAVAAAGNAPERLPAGVQGCGEEVGRGARGDRVAGGH---VEVVPV 555
Query: 201 GSYSTVCL-------APE--LAFGLGGVLR-----VSGPATPELALRSRAVTPPSL---- 242
G +C+ AP + LGG L V+ PA E R R P
Sbjct: 556 GQQLAICMLHGQLGTAPHAHVPTVLGGALGGRAGLVAAPARRECPARRRGGCWPRRPRRR 615
Query: 243 --GGGGDRGENREE----------GRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQ 290
GGGG G ++ + + P A P R G A C QVA
Sbjct: 616 HGGGGGGGGPGLQDLLGGGHAGGAHGHVVVAPAAAAPTAREGRAGRHGHVAVVCPQVAAG 675
Query: 291 S----------FLELGAQKTPGGGKNLGPRLCGKSPRGS--------QTARSSSPSRAWA 332
+ L +G G G+ G ++ R Q R R
Sbjct: 676 APVGADLDVSVVLWVGVVGHLGRGRGAGRAEAARAAREGGPHQGVFIQRGRGGLGHRP-L 734
Query: 333 PGWRQLGRGP-ATPMLHGLGPVP-PPLWAAVSASRWGGGGPQPLPQVSKEG-SGLARPDP 389
PGWR G GP A P + LG VP P A + ++ G P+ + SG R
Sbjct: 735 PGWRGQGVGPLAQPSVQVLGRVPRDPAVGAATVAQGPVHGHVPVELTAAAAVSGRGR--- 791
Query: 390 SCCVRAGLGAAKTPGAQGERLGPRGTRRARGLQLRPVGGQSRREAAPACSGP 441
+R GLG + A+G ++ G +G + GG R A GP
Sbjct: 792 ---LRDGLGRVASVAAEGAQVAWAGAVLVQGHEAGVAGG--ARGGGAAAGGP 838
>gi|38373671 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 41.2 bits (95), Expect = 0.002
Identities = 78/281 (27%), Positives = 106/281 (37%), Gaps = 52/281 (18%)
Query: 138 NLDLPGLR--PGKITASARPSSQALQFANSRVSLGTHRIGEGVGGEKRQEAGS------- 188
N +PG + P + + A PSS A + ++ G G+ G+ + S
Sbjct: 45 NGPVPGYQQTPPQGMSRAPPSSGAPPASTAQAPCGQAAYGQFGQGDVQNGPSSTVQMQRL 104
Query: 189 PGWNP-GLGLARLGS-------YSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPP 240
PG P G LA +G+ Y + ++A L G +++SG P PP
Sbjct: 105 PGSQPFGSPLAPVGNQPPVLQPYGPPPTSAQVATQLSG-MQISGAVAP---------APP 154
Query: 241 S--LGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQ 298
S LG G G G P +A +S A P +Q Q+S +
Sbjct: 155 SSGLGFGPPTSLASASGSFPNSGLYGSYPQGQAPPLSQ--AQGHPGIQTPQRSAPSQASS 212
Query: 299 KTP--GGGKNL----GPRLCGKS---PRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHG 349
TP GG L GP L G+S P SQ SSP +A PG T M
Sbjct: 213 FTPPASGGPRLPSMTGPLLPGQSFGGPSVSQPNHVSSPPQALPPG---------TQMTGP 263
Query: 350 LGPVPP---PLWAAVSASRWGGGGPQPLPQVSKEGSGLARP 387
LGP+PP P + G GP PQ + G A P
Sbjct: 264 LGPLPPMHSPQQPGYQPQQNGSFGPARGPQSNYGGPYPAAP 304
>gi|38373669 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 41.2 bits (95), Expect = 0.002
Identities = 78/281 (27%), Positives = 106/281 (37%), Gaps = 52/281 (18%)
Query: 138 NLDLPGLR--PGKITASARPSSQALQFANSRVSLGTHRIGEGVGGEKRQEAGS------- 188
N +PG + P + + A PSS A + ++ G G+ G+ + S
Sbjct: 45 NGPVPGYQQTPPQGMSRAPPSSGAPPASTAQAPCGQAAYGQFGQGDVQNGPSSTVQMQRL 104
Query: 189 PGWNP-GLGLARLGS-------YSTVCLAPELAFGLGGVLRVSGPATPELALRSRAVTPP 240
PG P G LA +G+ Y + ++A L G +++SG P PP
Sbjct: 105 PGSQPFGSPLAPVGNQPPVLQPYGPPPTSAQVATQLSG-MQISGAVAP---------APP 154
Query: 241 S--LGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQVAQQSFLELGAQ 298
S LG G G G P +A +S A P +Q Q+S +
Sbjct: 155 SSGLGFGPPTSLASASGSFPNSGLYGSYPQGQAPPLSQ--AQGHPGIQTPQRSAPSQASS 212
Query: 299 KTP--GGGKNL----GPRLCGKS---PRGSQTARSSSPSRAWAPGWRQLGRGPATPMLHG 349
TP GG L GP L G+S P SQ SSP +A PG T M
Sbjct: 213 FTPPASGGPRLPSMTGPLLPGQSFGGPSVSQPNHVSSPPQALPPG---------TQMTGP 263
Query: 350 LGPVPP---PLWAAVSASRWGGGGPQPLPQVSKEGSGLARP 387
LGP+PP P + G GP PQ + G A P
Sbjct: 264 LGPLPPMHSPQQPGYQPQQNGSFGPARGPQSNYGGPYPAAP 304
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 40.0 bits (92), Expect = 0.004
Identities = 104/428 (24%), Positives = 137/428 (32%), Gaps = 59/428 (13%)
Query: 58 QPWPPSPGRRLNRPAAVREPGPSPSSGLAEKLG--AVAGKKGVFLLIFARLLTFAAPRLG 115
+P PP P + + PGP ++G K G V G G + A G
Sbjct: 564 RPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA---VGPAGKDGEAGAQG 620
Query: 116 PPRGAVGAAGAQDFLNP--RPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHR 173
PP G G AG + P P + L P PG+ + +P Q + R
Sbjct: 621 PP-GPAGPAGERGEQGPAGSPGFQGLPGPAGPPGE---AGKPGEQGVPGDLGAPGPSGAR 676
Query: 174 IGEGVGGEKRQE-----AGSPGWN--PGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPA 226
G GE+ + AG G N PG A+ + + + A GL G+ G A
Sbjct: 677 GERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAA 736
Query: 227 TPELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAASPCLQ 286
R P G G G++ G +GP P S A P
Sbjct: 737 GLPGPKGDRGDAGPK-GADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGP--- 792
Query: 287 VAQQSFLELGAQKTPGGGKNLGP----RLCGKSPRGSQTARSSSPSRAWAPGWRQLGRGP 342
GA+ PG GP G Q P A A G GP
Sbjct: 793 --------TGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKG----DAGP 840
Query: 343 ATPMLHGLGPVPPP-----LWAAVSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGL 397
P GP PP + A + G GP + P PS
Sbjct: 841 PGP----AGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS----GNA 892
Query: 398 GAAKTPGAQGER--LGPRGTRRARGL--QLRPVG--GQSRREAAPACSGP--QPCRPHGT 449
G PG G+ GPRG G ++ P G G + + +P GP P P
Sbjct: 893 GPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQ 952
Query: 450 GAASSLGL 457
G A G+
Sbjct: 953 GIAGQRGV 960
Score = 39.3 bits (90), Expect = 0.008
Identities = 120/430 (27%), Positives = 144/430 (33%), Gaps = 102/430 (23%)
Query: 55 DFNQPWPPSPGRRLNRPAAVREPGPSPSSGLAEKLGAVAGKKGVFLLIFARLLTFAAPRL 114
D +P PP P P A +PG G AG KG
Sbjct: 801 DRGEPGPPGPAGFAGPPGADGQPGAKGEPG-------DAGAKG---------------DA 838
Query: 115 GPPRGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLGTHRI 174
GPP G G AG P P+ N+ PG + G ++ P + A RV
Sbjct: 839 GPP-GPAGPAGP-----PGPI-GNVGAPGAK-GARGSAGPPGATGFPGAAGRVG------ 884
Query: 175 GEGVGGEKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPATPELALRS 234
G G AG PG PG P G G +GPA R
Sbjct: 885 PPGPSG----NAGPPG-PPG---------------PAGKEGGKGPRGETGPAG-----RP 919
Query: 235 RAVTPPSLGGGGDRGENREEGRDLCLGPVAK--KPDPRALAISSRGAAASPCLQVAQQSF 292
V PP G G GE G D GP P P+ +A RG P Q ++ F
Sbjct: 920 GEVGPP--GPPGPAGEKGSPGAD---GPAGAPGTPGPQGIA-GQRGVVGLPG-QRGERGF 972
Query: 293 L-------ELGAQKTPGGGKNLGP----------RLCGKSPRGSQTARSSSPSRAWAPGW 335
E G Q G GP G+S R SP R +PG
Sbjct: 973 PGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGA 1032
Query: 336 R--QLGRGPA-TPMLHGLGPVPPPLWAAVSASRWGGGGPQ-PLPQVSKEGS-GLARPDPS 390
+ + GPA P G P P+ A + G GP P V G+ G A P
Sbjct: 1033 KGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGP--- 1089
Query: 391 CCVRAGLGAAKTPGAQGERLGPRGTRRARGLQLRPVGGQSRREAAPA-CSGPQPCR--PH 447
+ G G QG+R G +G R GLQ P S E P+ SGP R P
Sbjct: 1090 ---QGPRGDKGETGEQGDR-GIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPG 1145
Query: 448 GTGAASSLGL 457
GA GL
Sbjct: 1146 SAGAPGKDGL 1155
Score = 36.2 bits (82), Expect = 0.064
Identities = 113/446 (25%), Positives = 140/446 (31%), Gaps = 73/446 (16%)
Query: 61 PPSPGRRLNRPAAVREPGPSPSSGLAEKLG-----------AVAGKKGVFLLIFARLLTF 109
PP P + A EPGP+ G + G VAG KG
Sbjct: 459 PPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKG-------PAGER 511
Query: 110 AAPRLGPPRGAVGAAG--------AQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQ 161
+P P+G+ G AG L P P D PG RP
Sbjct: 512 GSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPP 571
Query: 162 FANSRVSLGTHRIGEGVGGE--KRQEAGSPGWNPGLGLARLGSYSTVCLAPELA------ 213
A + + +G GE K E G PG +G A + P A
Sbjct: 572 GARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGER 631
Query: 214 -----FGLGGVLRVSGPATP--ELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKK 266
G G + GPA P E P LG G G E G G V
Sbjct: 632 GEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERG-VQGP 690
Query: 267 PDPRALAISSRGAAASPCLQVAQQSFLELGAQKTPGGGKNLGPRLCG-KSPRGSQTARSS 325
P P RGA +P A+ + GA P G P L G RG+
Sbjct: 691 PGP----AGPRGANGAPGNDGAKG---DAGAPGAP--GSQGAPGLQGMPGERGAAGLPGP 741
Query: 326 SPSRAWAPGWRQLGRGPATPMLHGL-GPVPPPLWAAVSASRWGGGGPQPLPQVSKEGSGL 384
R A G + P + GL GP+ PP A + G P G+
Sbjct: 742 KGDRGDA-GPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPG 800
Query: 385 ARPDPSCCVRAGL----GAAKTPGAQGE--------RLGPRGTRRARGLQLRPVG--GQS 430
R +P AG GA PGA+GE GP G G P+G G
Sbjct: 801 DRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAG-PPGPIGNVGAP 859
Query: 431 RREAAPACSGPQPCRPHGTGAASSLG 456
+ A +GP P TG + G
Sbjct: 860 GAKGARGSAGP----PGATGFPGAAG 881
Score = 34.3 bits (77), Expect = 0.24
Identities = 79/293 (26%), Positives = 105/293 (35%), Gaps = 51/293 (17%)
Query: 187 GSPGWNPGLGLARLGSYSTVCLAPELAFGLG----GVLRVSGPATPELALRSRAVTPPSL 242
G PG PGLG G++ AP+L++G G + V GP P R P +
Sbjct: 148 GPPG-PPGLG----GNF-----APQLSYGYDEKSTGGISVPGPMGPS-GPRGLPGPPGAP 196
Query: 243 GGGGDRGENREEGRDLCLGPVAKKPDPRALAISSR-GAAASPCLQVAQQSFLELGAQKTP 301
G G +G E G GP+ + P + G A P + GA+ P
Sbjct: 197 GPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLP 256
Query: 302 G-----------GGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLG-RGPATPMLHG 349
G G L P G + SP APG Q+G RG P G
Sbjct: 257 GTAGLPGMKGHRGFSGLDGAKGDAGPAGPK-GEPGSPGENGAPG--QMGPRG--LPGERG 311
Query: 350 LGPVPPPLWAAVSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGER 409
P P A + G GP P P +G A P G GA+GE
Sbjct: 312 RPGAPGPAGARGNDGATGAAGP-PGP------TGPAGPP---------GFPGAVGAKGEA 355
Query: 410 --LGPRGTRRARGLQLRPVGGQSRREAAPACSGPQPCRPHGTGAASSLGLQDA 460
GPRG+ +G++ P A PA + +P GA + G+ A
Sbjct: 356 GPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGA 408
>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 40.0 bits (92), Expect = 0.004
Identities = 65/238 (27%), Positives = 85/238 (35%), Gaps = 45/238 (18%)
Query: 227 TPELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPV-----AKKPDPRALAISSRGAAA 281
TP L L VT P G G+ R G GP A+ P PR L R
Sbjct: 2 TPTLLL---TVTVPRAAGSA--GQRRAPGLPRSSGPAWAESRARPPRPRGL--EPRHPPG 54
Query: 282 SPCLQVAQQSFLELGAQKTPGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRG 341
SP L+ ++ + + G G +G G P G A R G ++GR
Sbjct: 55 SPALRPTDRTC----SSSSAGVGGGVGGAQPGSVPLGQHLALE----RGRTLGHGRVGRR 106
Query: 342 PATPMLHGLGPVPPPLWAAVSASRWGGG-GPQPLPQV---------SKEGSGLARPDPSC 391
P LG + P A V GG P + QV ++ L
Sbjct: 107 DPPP----LGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGL 162
Query: 392 CVRAGLGAAKTPGAQGERLGPRGTRRAR----------GLQLRPVGGQSRREAAPACS 439
+ G+GA G +G +GP G RAR G R VG + R A+ ACS
Sbjct: 163 LAQVGIGAGHARGGRGA-VGPAGQHRARLGAAVLRGTAGAPARRVGVVAERAASAACS 219
>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 40.0 bits (92), Expect = 0.004
Identities = 65/238 (27%), Positives = 85/238 (35%), Gaps = 45/238 (18%)
Query: 227 TPELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPV-----AKKPDPRALAISSRGAAA 281
TP L L VT P G G+ R G GP A+ P PR L R
Sbjct: 2 TPTLLL---TVTVPRAAGSA--GQRRAPGLPRSSGPAWAESRARPPRPRGL--EPRHPPG 54
Query: 282 SPCLQVAQQSFLELGAQKTPGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQLGRG 341
SP L+ ++ + + G G +G G P G A R G ++GR
Sbjct: 55 SPALRPTDRTC----SSSSAGVGGGVGGAQPGSVPLGQHLALE----RGRTLGHGRVGRR 106
Query: 342 PATPMLHGLGPVPPPLWAAVSASRWGGG-GPQPLPQV---------SKEGSGLARPDPSC 391
P LG + P A V GG P + QV ++ L
Sbjct: 107 DPPP----LGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGRQRRALGGQALGL 162
Query: 392 CVRAGLGAAKTPGAQGERLGPRGTRRAR----------GLQLRPVGGQSRREAAPACS 439
+ G+GA G +G +GP G RAR G R VG + R A+ ACS
Sbjct: 163 LAQVGIGAGHARGGRGA-VGPAGQHRARLGAAVLRGTAGAPARRVGVVAERAASAACS 219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,077,540
Number of Sequences: 37866
Number of extensions: 1530280
Number of successful extensions: 7396
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 443
Number of HSP's that attempted gapping in prelim test: 6766
Number of HSP's gapped (non-prelim): 1055
length of query: 461
length of database: 18,247,518
effective HSP length: 106
effective length of query: 355
effective length of database: 14,233,722
effective search space: 5052971310
effective search space used: 5052971310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.