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Search of human proteins with 239745979
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745979 PREDICTED: hypothetical protein XP_002343633 [Homo
sapiens]
(128 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756972 PREDICTED: hypothetical protein XP_002345128 [Homo ... 274 2e-74
gi|239751481 PREDICTED: hypothetical protein [Homo sapiens] 274 2e-74
gi|239745979 PREDICTED: hypothetical protein XP_002343633 [Homo ... 274 2e-74
gi|119392077 Rap guanine nucleotide exchange factor (GEF) 5 [Hom... 31 0.23
gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens] 27 3.3
gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens] 27 3.3
gi|239753190 PREDICTED: similar to proliferation-inducing protei... 27 3.3
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 27 4.4
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 27 4.4
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 27 4.4
gi|138175817 zinc finger protein 236 [Homo sapiens] 27 5.7
gi|148225659 endonuclease domain containing 1 [Homo sapiens] 27 5.7
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 26 7.4
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 26 7.4
gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 26 7.4
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 26 7.4
gi|153791472 MAP/microtubule affinity-regulating kinase 1 [Homo ... 26 7.4
gi|113680890 zinc finger protein 90 [Homo sapiens] 26 7.4
gi|239047414 slingshot 1 isoform 1 [Homo sapiens] 26 9.7
gi|239754438 PREDICTED: hypothetical protein [Homo sapiens] 26 9.7
gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo ... 26 9.7
gi|239747764 PREDICTED: hypothetical protein XP_002348243 [Homo ... 26 9.7
gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo ... 26 9.7
gi|239741630 PREDICTED: hypothetical protein XP_002342267 [Homo ... 26 9.7
gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens] 26 9.7
gi|150378449 X-ray radiation resistance associated 1 [Homo sapiens] 26 9.7
>gi|239756972 PREDICTED: hypothetical protein XP_002345128 [Homo
sapiens]
Length = 128
Score = 274 bits (700), Expect = 2e-74
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN 60
MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN
Sbjct: 1 MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN 60
Query: 61 MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH 120
MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH
Sbjct: 61 MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH 120
Query: 121 MALHTYGL 128
MALHTYGL
Sbjct: 121 MALHTYGL 128
>gi|239751481 PREDICTED: hypothetical protein [Homo sapiens]
Length = 128
Score = 274 bits (700), Expect = 2e-74
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN 60
MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN
Sbjct: 1 MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN 60
Query: 61 MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH 120
MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH
Sbjct: 61 MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH 120
Query: 121 MALHTYGL 128
MALHTYGL
Sbjct: 121 MALHTYGL 128
>gi|239745979 PREDICTED: hypothetical protein XP_002343633 [Homo
sapiens]
Length = 128
Score = 274 bits (700), Expect = 2e-74
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN 60
MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN
Sbjct: 1 MAPLCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKN 60
Query: 61 MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH 120
MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH
Sbjct: 61 MHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSATIH 120
Query: 121 MALHTYGL 128
MALHTYGL
Sbjct: 121 MALHTYGL 128
>gi|119392077 Rap guanine nucleotide exchange factor (GEF) 5 [Homo
sapiens]
Length = 730
Score = 31.2 bits (69), Expect = 0.23
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 4 LCSSLGHRARPCQKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKNMHR 63
LCS LG R + +K K + K F V + + R S+ W+ GK
Sbjct: 556 LCSQLGKRVQLVKKFIKIAAHCKAQRNLNSFFAIVMGLNTASVSRLSQTWEKIPGKFKKL 615
Query: 64 -NVHRSLTPQSNSNAAATGGFLKMPPPK 90
+ SLT S ++ A F KM PPK
Sbjct: 616 FSELESLTDPSLNHKAYRDAFKKMKPPK 643
>gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]
Length = 4302
Score = 27.3 bits (59), Expect = 3.3
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 58 GKNMHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYP 102
G N+ + S PQ+ +N +G L P Y LW F FS P
Sbjct: 649 GANICLPLDASCHPQACANGCTSGPGL--PGAPYALWREFLFSVP 691
>gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens]
Length = 4303
Score = 27.3 bits (59), Expect = 3.3
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 58 GKNMHRNVHRSLTPQSNSNAAATGGFLKMPPPKYVLWSYFFFSYP 102
G N+ + S PQ+ +N +G L P Y LW F FS P
Sbjct: 649 GANICLPLDASCHPQACANGCTSGPGL--PGAPYALWREFLFSVP 691
>gi|239753190 PREDICTED: similar to proliferation-inducing protein
25 [Homo sapiens]
Length = 65
Score = 27.3 bits (59), Expect = 3.3
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 3 PLCSSLGHRARPCQKKKKK 21
P SSLG+R R C KKKKK
Sbjct: 2 PPHSSLGNRVRLCLKKKKK 20
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 26.9 bits (58), Expect = 4.4
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 16 QKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKNMHRNVHRSLTPQSNS 75
++KK K EK +R + D T +K + + K HA ++ ++ H+ + + +S
Sbjct: 1206 KEKKDKESTEKYKDRKDRASVDSTQDKKNKQKLPEKAEKKHAAEDKAKSKHKEKSDKEHS 1265
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 26.9 bits (58), Expect = 4.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 70 TPQSNSNAAATGGFLKMPPP 89
TPQS S++ A GG LK P P
Sbjct: 1146 TPQSTSSSMAEGGDLKPPTP 1165
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 26.9 bits (58), Expect = 4.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 70 TPQSNSNAAATGGFLKMPPP 89
TPQS S++ A GG LK P P
Sbjct: 1146 TPQSTSSSMAEGGDLKPPTP 1165
>gi|138175817 zinc finger protein 236 [Homo sapiens]
Length = 1845
Score = 26.6 bits (57), Expect = 5.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 105 HVSSVCFHSTGSATIHMALHT 125
HV S F + GS +HM LHT
Sbjct: 1226 HVCSNAFSTKGSLKVHMRLHT 1246
>gi|148225659 endonuclease domain containing 1 [Homo sapiens]
Length = 500
Score = 26.6 bits (57), Expect = 5.7
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 46 TRRFSERWKTHAGKNMHRNVHRSLTPQSNS 75
T+ F ERW N+H + R+LTPQ S
Sbjct: 167 TQSFQERWYV----NLHSLMDRALTPQCGS 192
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 26.2 bits (56), Expect = 7.4
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 46 TRRFSERWKTHAGKNMHRNVHRSLTPQSNSN----AAATGGFLKMPP--PKYVLWSYFFF 99
+++ SERWKT +GK + + T + + + A GG K P PK +F F
Sbjct: 39 SKKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLF 98
Query: 100 S 100
S
Sbjct: 99 S 99
>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 26.2 bits (56), Expect = 7.4
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 46 TRRFSERWKTHAGKNMHRNVHRSLTPQSNSN----AAATGGFLKMPP--PKYVLWSYFFF 99
+++ SERWKT +GK + + T + + + A GG K P PK +F F
Sbjct: 39 SKKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLF 98
Query: 100 S 100
S
Sbjct: 99 S 99
>gi|239742753 PREDICTED: similar to high mobility group box 3
isoform 2 [Homo sapiens]
Length = 183
Score = 26.2 bits (56), Expect = 7.4
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 46 TRRFSERWKTHAGKNMHRNVHRSLTPQSNSN----AAATGGFLKMPP--PKYVLWSYFFF 99
+++ SERWKT +GK + + T + + + A GG K P PK +F F
Sbjct: 21 SKKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLF 80
Query: 100 S 100
S
Sbjct: 81 S 81
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 26.2 bits (56), Expect = 7.4
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 46 TRRFSERWKTHAGKNMHRNVHRSLTPQSNSN----AAATGGFLKMPP--PKYVLWSYFFF 99
+++ SERWKT +GK + + T + + + A GG K P PK +F F
Sbjct: 39 SKKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLF 98
Query: 100 S 100
S
Sbjct: 99 S 99
>gi|153791472 MAP/microtubule affinity-regulating kinase 1 [Homo
sapiens]
Length = 795
Score = 26.2 bits (56), Expect = 7.4
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 15 CQKKKKKSILEKMG-ERPGHFTQDVTYEKSTTTRRFSERWKTHAGKNMHRNVHRSLTPQS 73
CQ+ + S L + P H + + RRFS+ HAG ++ V + PQ+
Sbjct: 387 CQRSRPSSDLNNSTLQSPAHLKVQRSISANQKQRRFSD----HAGPSIPPAVSYTKRPQA 442
Query: 74 NS 75
NS
Sbjct: 443 NS 444
>gi|113680890 zinc finger protein 90 [Homo sapiens]
Length = 636
Score = 26.2 bits (56), Expect = 7.4
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 33 HFTQDVTYEKSTTTRRFSERWKTHAGKNMHRNVHRSLTPQSN 74
H T + +++ S+ R E WK H G + +TPQ N
Sbjct: 114 HATLEDSWDVSSQLDRQQENWKRHLGSEASTQ-KKIITPQEN 154
>gi|239047414 slingshot 1 isoform 1 [Homo sapiens]
Length = 1049
Score = 25.8 bits (55), Expect = 9.7
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 77 AAATGGFLKMPPPKYVLWSYFFFSYPQEHVSSVCFHSTGSA 117
A+ GG LK PPP + + S+ ++ + ++C+ T S+
Sbjct: 888 ASLEGGSLKSPPPFFYRLDH-TSSFSKDFLKTICYTPTSSS 927
>gi|239754438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 709
Score = 25.8 bits (55), Expect = 9.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 62 HRNVHRSLTPQSNSNAAATGGFLKMPPP 89
HR V S + A GGFL+ PPP
Sbjct: 201 HRVVPGSALRELGVRAGGVGGFLRPPPP 228
>gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo
sapiens]
Length = 709
Score = 25.8 bits (55), Expect = 9.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 62 HRNVHRSLTPQSNSNAAATGGFLKMPPP 89
HR V S + A GGFL+ PPP
Sbjct: 201 HRVVPGSALRELGVRAGGVGGFLRPPPP 228
>gi|239747764 PREDICTED: hypothetical protein XP_002348243 [Homo
sapiens]
Length = 65
Score = 25.8 bits (55), Expect = 9.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 3 PLCSSLGHRARPCQKKKKK 21
P SSLG+R R C +KKKK
Sbjct: 2 PPHSSLGNRVRLCLEKKKK 20
>gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo
sapiens]
Length = 709
Score = 25.8 bits (55), Expect = 9.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 62 HRNVHRSLTPQSNSNAAATGGFLKMPPP 89
HR V S + A GGFL+ PPP
Sbjct: 201 HRVVPGSALRELGVRAGGVGGFLRPPPP 228
>gi|239741630 PREDICTED: hypothetical protein XP_002342267 [Homo
sapiens]
Length = 65
Score = 25.8 bits (55), Expect = 9.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 3 PLCSSLGHRARPCQKKKKK 21
P SSLG+R R C +KKKK
Sbjct: 2 PPHSSLGNRVRLCLEKKKK 20
>gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens]
Length = 241
Score = 25.8 bits (55), Expect = 9.7
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 5 CSSLGHRARPC--QKKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKNMH 62
C GH A+ C Q K L E + +EK TR S + K K H
Sbjct: 136 CGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDPTRNPSRKRKKEKKKKKH 195
Query: 63 RNVHRSLTPQSNSNA 77
R+ S + S+S +
Sbjct: 196 RDRKSSDSDSSDSES 210
>gi|150378449 X-ray radiation resistance associated 1 [Homo sapiens]
Length = 792
Score = 25.8 bits (55), Expect = 9.7
Identities = 18/74 (24%), Positives = 29/74 (39%)
Query: 17 KKKKKSILEKMGERPGHFTQDVTYEKSTTTRRFSERWKTHAGKNMHRNVHRSLTPQSNSN 76
K KK+S E + PGH K R+ S+ +A +N ++ H + ++ N
Sbjct: 70 KGKKESRRENQVDLPGHILDQAFLLKHHCVRKPSDLCTINAKENDFKHFHSVIYINASEN 129
Query: 77 AAATGGFLKMPPPK 90
F P K
Sbjct: 130 LLPLEAFHTFPALK 143
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.129 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,938,252
Number of Sequences: 37866
Number of extensions: 242870
Number of successful extensions: 595
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 28
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.