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Search of human proteins with 239745893
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745893 PREDICTED: hypothetical protein XP_002343611 [Homo
sapiens]
(350 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745893 PREDICTED: hypothetical protein XP_002343611 [Homo ... 708 0.0
gi|239756890 PREDICTED: similar to S100 calcium binding protein ... 593 e-170
gi|239751386 PREDICTED: similar to S100 calcium binding protein ... 593 e-170
gi|4506761 S100 calcium binding protein A10 [Homo sapiens] 141 8e-34
gi|5454032 S100 calcium binding protein A1 [Homo sapiens] 64 3e-10
gi|150010678 S100 calcium binding protein Z [Homo sapiens] 62 6e-10
gi|5174663 S100 calcium binding protein P [Homo sapiens] 55 1e-07
gi|5032057 S100 calcium binding protein A11 [Homo sapiens] 53 4e-07
gi|5454034 S100 calcium-binding protein, beta [Homo sapiens] 47 2e-05
gi|9845516 S100 calcium-binding protein A4 [Homo sapiens] 46 6e-05
gi|4506765 S100 calcium-binding protein A4 [Homo sapiens] 46 6e-05
gi|5032059 S100 calcium-binding protein A12 [Homo sapiens] 43 4e-04
gi|4506773 S100 calcium-binding protein A9 [Homo sapiens] 41 0.002
gi|62122917 filaggrin family member 2 [Homo sapiens] 39 0.009
gi|4506767 S100 calcium binding protein A5 [Homo sapiens] 38 0.012
gi|171916097 repetin [Homo sapiens] 37 0.026
gi|7657532 S100 calcium-binding protein A6 [Homo sapiens] 37 0.035
gi|57864582 hornerin [Homo sapiens] 35 0.10
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 32 0.85
gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens] 32 0.85
gi|149944526 additional sex combs like 3 [Homo sapiens] 32 1.1
gi|60097902 filaggrin [Homo sapiens] 31 1.9
gi|38788260 bromodomain PHD finger transcription factor isoform ... 30 2.5
gi|38788274 bromodomain PHD finger transcription factor isoform ... 30 2.5
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 30 3.2
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 30 3.2
gi|224458301 family with sequence similarity 186, member A [Homo... 30 4.2
gi|110224479 prosaposin isoform c preproprotein [Homo sapiens] 30 4.2
gi|110224476 prosaposin isoform b preproprotein [Homo sapiens] 30 4.2
gi|11386147 prosaposin isoform a preproprotein [Homo sapiens] 30 4.2
>gi|239745893 PREDICTED: hypothetical protein XP_002343611 [Homo
sapiens]
Length = 350
Score = 708 bits (1828), Expect = 0.0
Identities = 350/350 (100%), Positives = 350/350 (100%)
Query: 1 MTWKNNKFTAIPGRACAALCPVSRLPPRPRPFVGGVRTDSSGTPFLPGGSFSPYSNHVAL 60
MTWKNNKFTAIPGRACAALCPVSRLPPRPRPFVGGVRTDSSGTPFLPGGSFSPYSNHVAL
Sbjct: 1 MTWKNNKFTAIPGRACAALCPVSRLPPRPRPFVGGVRTDSSGTPFLPGGSFSPYSNHVAL 60
Query: 61 VGLPCHPGTLPDAGSLQLSLSHMRSGQRLQARPFGSLSPDFSAKLASQVQGAGLEGGGLE 120
VGLPCHPGTLPDAGSLQLSLSHMRSGQRLQARPFGSLSPDFSAKLASQVQGAGLEGGGLE
Sbjct: 61 VGLPCHPGTLPDAGSLQLSLSHMRSGQRLQARPFGSLSPDFSAKLASQVQGAGLEGGGLE 120
Query: 121 LLKPTGAGSLTVACEVFRDTPVAAILSFLVSFQSGPVVCHLYTLSDQLLFPAFPPHADIP 180
LLKPTGAGSLTVACEVFRDTPVAAILSFLVSFQSGPVVCHLYTLSDQLLFPAFPPHADIP
Sbjct: 121 LLKPTGAGSLTVACEVFRDTPVAAILSFLVSFQSGPVVCHLYTLSDQLLFPAFPPHADIP 180
Query: 181 KGRRLLQAGVRVGMPQSKGVQGQSFLGKAKQVLNTAPSRGALRPSLPSAHNAPPAKVSTD 240
KGRRLLQAGVRVGMPQSKGVQGQSFLGKAKQVLNTAPSRGALRPSLPSAHNAPPAKVSTD
Sbjct: 181 KGRRLLQAGVRVGMPQSKGVQGQSFLGKAKQVLNTAPSRGALRPSLPSAHNAPPAKVSTD 240
Query: 241 LTNNPSPMEHTMETVLFTFHRFAGDKGYLMKEGLKVLMGKEFLGFLENQKDPLAADITMK 300
LTNNPSPMEHTMETVLFTFHRFAGDKGYLMKEGLKVLMGKEFLGFLENQKDPLAADITMK
Sbjct: 241 LTNNPSPMEHTMETVLFTFHRFAGDKGYLMKEGLKVLMGKEFLGFLENQKDPLAADITMK 300
Query: 301 DMDQCQDSTLNFQNLFSLTAGLTTVDNNYFVVPMKQKGTKQAELSNYSAL 350
DMDQCQDSTLNFQNLFSLTAGLTTVDNNYFVVPMKQKGTKQAELSNYSAL
Sbjct: 301 DMDQCQDSTLNFQNLFSLTAGLTTVDNNYFVVPMKQKGTKQAELSNYSAL 350
>gi|239756890 PREDICTED: similar to S100 calcium binding protein A10
(annexin II ligand, calpactin I, light polypeptide
(p11)) [Homo sapiens]
Length = 370
Score = 593 bits (1529), Expect = e-170
Identities = 312/370 (84%), Positives = 319/370 (86%), Gaps = 20/370 (5%)
Query: 1 MTWKNNKFTAIPGRACAALCPVSRLPPRPRPFVGGVRTDSSGTPFLPGGSFSPYSNHVAL 60
MTWKNNKFTAIPGRACAALCPVSRLPPRPRPFVGGVRTDSSGTPFLPGGSFSPYSNHVAL
Sbjct: 1 MTWKNNKFTAIPGRACAALCPVSRLPPRPRPFVGGVRTDSSGTPFLPGGSFSPYSNHVAL 60
Query: 61 VGLPCHPGTLPDAGSLQLSLSHMRSGQRLQARPFGSLSPDFSAKLASQVQGAGLEGGGLE 120
VGLPCHPGTLPDAGSLQLSLSHMRSGQRLQARPFGSLSPDFSAKLASQVQGAGLEGGGLE
Sbjct: 61 VGLPCHPGTLPDAGSLQLSLSHMRSGQRLQARPFGSLSPDFSAKLASQVQGAGLEGGGLE 120
Query: 121 LLKPTGAGSLTVACEVFRDTPVAAILSFLVSFQSGPVVCHLYTLSDQLL--FPAFPPHAD 178
LLKPTGAGSLTVACEVFRDTPVAAILSFLVSFQSGPV+ + ++ P+FP
Sbjct: 121 LLKPTGAGSLTVACEVFRDTPVAAILSFLVSFQSGPVIRGENSPLERKAPGLPSFPAFLR 180
Query: 179 IPK-----------GRRLLQAG------VRV-GMPQSKGVQGQSFLGKAKQVLNTAPSRG 220
P RRL A +RV M G+ L AKQVLNTAPSRG
Sbjct: 181 APVTAAFLLRLEEINRRLAAAAGALSCVLRVPSMAPLTSRPGRKVLVIAKQVLNTAPSRG 240
Query: 221 ALRPSLPSAHNAPPAKVSTDLTNNPSPMEHTMETVLFTFHRFAGDKGYLMKEGLKVLMGK 280
ALRPSLPSAHNAPPAKVSTDLTNNPSPMEHTMETVLFTFHRFAGDKGYLMKEGLKVLMGK
Sbjct: 241 ALRPSLPSAHNAPPAKVSTDLTNNPSPMEHTMETVLFTFHRFAGDKGYLMKEGLKVLMGK 300
Query: 281 EFLGFLENQKDPLAADITMKDMDQCQDSTLNFQNLFSLTAGLTTVDNNYFVVPMKQKGTK 340
EFLGFLENQKDPLAADITMKDMDQCQDSTLNFQNLFSLTAGLTTVDNNYFVVPMKQKGTK
Sbjct: 301 EFLGFLENQKDPLAADITMKDMDQCQDSTLNFQNLFSLTAGLTTVDNNYFVVPMKQKGTK 360
Query: 341 QAELSNYSAL 350
QAELSNYSAL
Sbjct: 361 QAELSNYSAL 370
>gi|239751386 PREDICTED: similar to S100 calcium binding protein A10
(annexin II ligand, calpactin I, light polypeptide
(p11)) [Homo sapiens]
Length = 370
Score = 593 bits (1529), Expect = e-170
Identities = 312/370 (84%), Positives = 319/370 (86%), Gaps = 20/370 (5%)
Query: 1 MTWKNNKFTAIPGRACAALCPVSRLPPRPRPFVGGVRTDSSGTPFLPGGSFSPYSNHVAL 60
MTWKNNKFTAIPGRACAALCPVSRLPPRPRPFVGGVRTDSSGTPFLPGGSFSPYSNHVAL
Sbjct: 1 MTWKNNKFTAIPGRACAALCPVSRLPPRPRPFVGGVRTDSSGTPFLPGGSFSPYSNHVAL 60
Query: 61 VGLPCHPGTLPDAGSLQLSLSHMRSGQRLQARPFGSLSPDFSAKLASQVQGAGLEGGGLE 120
VGLPCHPGTLPDAGSLQLSLSHMRSGQRLQARPFGSLSPDFSAKLASQVQGAGLEGGGLE
Sbjct: 61 VGLPCHPGTLPDAGSLQLSLSHMRSGQRLQARPFGSLSPDFSAKLASQVQGAGLEGGGLE 120
Query: 121 LLKPTGAGSLTVACEVFRDTPVAAILSFLVSFQSGPVVCHLYTLSDQLL--FPAFPPHAD 178
LLKPTGAGSLTVACEVFRDTPVAAILSFLVSFQSGPV+ + ++ P+FP
Sbjct: 121 LLKPTGAGSLTVACEVFRDTPVAAILSFLVSFQSGPVIRGENSPLERKAPGLPSFPAFLR 180
Query: 179 IPK-----------GRRLLQAG------VRV-GMPQSKGVQGQSFLGKAKQVLNTAPSRG 220
P RRL A +RV M G+ L AKQVLNTAPSRG
Sbjct: 181 APVTAAFLLRLEEINRRLAAAAGALSCVLRVPSMAPLTSRPGRKVLVIAKQVLNTAPSRG 240
Query: 221 ALRPSLPSAHNAPPAKVSTDLTNNPSPMEHTMETVLFTFHRFAGDKGYLMKEGLKVLMGK 280
ALRPSLPSAHNAPPAKVSTDLTNNPSPMEHTMETVLFTFHRFAGDKGYLMKEGLKVLMGK
Sbjct: 241 ALRPSLPSAHNAPPAKVSTDLTNNPSPMEHTMETVLFTFHRFAGDKGYLMKEGLKVLMGK 300
Query: 281 EFLGFLENQKDPLAADITMKDMDQCQDSTLNFQNLFSLTAGLTTVDNNYFVVPMKQKGTK 340
EFLGFLENQKDPLAADITMKDMDQCQDSTLNFQNLFSLTAGLTTVDNNYFVVPMKQKGTK
Sbjct: 301 EFLGFLENQKDPLAADITMKDMDQCQDSTLNFQNLFSLTAGLTTVDNNYFVVPMKQKGTK 360
Query: 341 QAELSNYSAL 350
QAELSNYSAL
Sbjct: 361 QAELSNYSAL 370
>gi|4506761 S100 calcium binding protein A10 [Homo sapiens]
Length = 97
Score = 141 bits (356), Expect = 8e-34
Identities = 68/96 (70%), Positives = 77/96 (80%)
Query: 245 PSPMEHTMETVLFTFHRFAGDKGYLMKEGLKVLMGKEFLGFLENQKDPLAADITMKDMDQ 304
PS MEH MET++FTFH+FAGDKGYL KE L+VLM KEF GFLENQKDPLA D MKD+DQ
Sbjct: 2 PSQMEHAMETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQ 61
Query: 305 CQDSTLNFQNLFSLTAGLTTVDNNYFVVPMKQKGTK 340
C+D + FQ+ FSL AGLT N+YFVV MKQKG K
Sbjct: 62 CRDGKVGFQSFFSLIAGLTIACNDYFVVHMKQKGKK 97
>gi|5454032 S100 calcium binding protein A1 [Homo sapiens]
Length = 94
Score = 63.5 bits (153), Expect = 3e-10
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 246 SPMEHTMETVLFTFHRFAG---DKGYLMKEGLKVLMGKEFLGFLENQKDPLAADITMKDM 302
S +E MET++ FH +G DK L K+ LK L+ E GFL+ QKD A D MK++
Sbjct: 3 SELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDVDAVDKVMKEL 62
Query: 303 DQCQDSTLNFQNLFSLTAGLTTVDNNYF 330
D+ D ++FQ L A LT NN+F
Sbjct: 63 DENGDGEVDFQEYVVLVAALTVACNNFF 90
>gi|150010678 S100 calcium binding protein Z [Homo sapiens]
Length = 99
Score = 62.4 bits (150), Expect = 6e-10
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 245 PSPMEHTMETVLFTFHRFAGD--KGYLMKEG-LKVLMGKEFLGFLENQKDPLAADITMKD 301
P+ +E M+T++ FHR++G K + + +G LK+L+ +E FL QK+ D ++D
Sbjct: 2 PTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLSCQKETQLVDKIVQD 61
Query: 302 MDQCQDSTLNFQNLFSLTAGLTTVDNNYFVVPMKQKG 338
+D +D+ ++F + A LT N+YFV +K+KG
Sbjct: 62 LDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKG 98
>gi|5174663 S100 calcium binding protein P [Homo sapiens]
Length = 95
Score = 54.7 bits (130), Expect = 1e-07
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 248 MEHTMETVLFTFHRFAGDKGY---LMKEGLKVLMGKEFLGFLENQKDPLAADITMKDMDQ 304
+E M ++ F R++G +G L K LKVLM KE GFL++ KD A D +KD+D
Sbjct: 4 LETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDA 63
Query: 305 CQDSTLNFQNLFSLTAGLTTVDNNYF 330
D+ ++F A +T+ + YF
Sbjct: 64 NGDAQVDFSEFIVFVAAITSACHKYF 89
>gi|5032057 S100 calcium binding protein A11 [Homo sapiens]
Length = 105
Score = 53.1 bits (126), Expect = 4e-07
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 243 NNPSPMEHTMETVLFTFHRFAGDKGY---LMKEGLKVLMGKEFLGFLENQKDPLAADITM 299
++P+ E +E+++ F ++AG GY L K M E F +NQKDP D M
Sbjct: 5 SSPTETERCIESLIAVFQKYAGKDGYNYTLSKTEFLSFMNTELAAFTKNQKDPGVLDRMM 64
Query: 300 KDMDQCQDSTLNFQNLFSLTAGLTTVDNNYFV--VPMKQK 337
K +D D L+F +L GL ++ F+ VP +++
Sbjct: 65 KKLDTNSDGQLDFSEFLNLIGGLAMACHDSFLKAVPSQKR 104
>gi|5454034 S100 calcium-binding protein, beta [Homo sapiens]
Length = 92
Score = 47.4 bits (111), Expect = 2e-05
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 246 SPMEHTMETVLFTFHRFAG---DKGYLMKEGLKVLMGKEFLGFLENQKDPLAADITMKDM 302
S +E M ++ FH+++G DK L K LK L+ E FLE K+ D M+ +
Sbjct: 2 SELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL 61
Query: 303 DQCQDSTLNFQNLFSLTAGLTTVDNNYF 330
D D +FQ + A +TT + +F
Sbjct: 62 DNDGDGECDFQEFMAFVAMVTTACHEFF 89
>gi|9845516 S100 calcium-binding protein A4 [Homo sapiens]
Length = 101
Score = 45.8 bits (107), Expect = 6e-05
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 247 PMEHTMETVLFTFHRFA---GDKGYLMKEGLKVLMGKEFLGFLENQKDPLAADITMKDMD 303
P+E ++ ++ TFH+++ GDK L K LK L+ +E FL + D A M ++D
Sbjct: 4 PLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLD 63
Query: 304 QCQDSTLNFQNLFSLTAGLTTVDNNYF 330
+D+ ++FQ + + + N +F
Sbjct: 64 SNRDNEVDFQEYCVFLSCIAMMCNEFF 90
>gi|4506765 S100 calcium-binding protein A4 [Homo sapiens]
Length = 101
Score = 45.8 bits (107), Expect = 6e-05
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 247 PMEHTMETVLFTFHRFA---GDKGYLMKEGLKVLMGKEFLGFLENQKDPLAADITMKDMD 303
P+E ++ ++ TFH+++ GDK L K LK L+ +E FL + D A M ++D
Sbjct: 4 PLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLD 63
Query: 304 QCQDSTLNFQNLFSLTAGLTTVDNNYF 330
+D+ ++FQ + + + N +F
Sbjct: 64 SNRDNEVDFQEYCVFLSCIAMMCNEFF 90
>gi|5032059 S100 calcium-binding protein A12 [Homo sapiens]
Length = 92
Score = 43.1 bits (100), Expect = 4e-04
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 248 MEHTMETVLFTFHRFAGDKGY---LMKEGLKVLMGKEFLGFLENQKDPLAADITMKDMDQ 304
+E +E ++ FH+++ KG+ L K LK L+ KE ++N KD D + +D
Sbjct: 4 LEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDA 63
Query: 305 CQDSTLNFQNLFSLTA 320
QD ++FQ SL A
Sbjct: 64 NQDEQVDFQEFISLVA 79
>gi|4506773 S100 calcium-binding protein A9 [Homo sapiens]
Length = 114
Score = 40.8 bits (94), Expect = 0.002
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 241 LTNNPSPMEHTMETVLFTFHRFAGDKGY---LMKEGLKVLMGKEFLGFLENQ-KDPLAAD 296
+T S +E +ET++ TFH+++ G+ L + K L+ K+ FL+ + K+ +
Sbjct: 1 MTCKMSQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIE 60
Query: 297 ITMKDMDQCQDSTLNFQNLFSLTAGLT 323
M+D+D D L+F+ L A LT
Sbjct: 61 HIMEDLDTNADKQLSFEEFIMLMARLT 87
>gi|62122917 filaggrin family member 2 [Homo sapiens]
Length = 2391
Score = 38.5 bits (88), Expect = 0.009
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 254 TVLFTFHRFA---GDKGYLMKEGLKVLMGKEFLGFLENQKDPLAADITMKDMDQCQDSTL 310
TV+ F+++ G+ G L K LK L+ KE L+N DP D+ M +D+ D L
Sbjct: 10 TVIDVFYKYTKQDGECGTLSKGELKELLEKELHPVLKNPDDPDTVDVIMHMLDRDHDRRL 69
Query: 311 NFQNLFSLTAGLTTVDN 327
+F + LT N
Sbjct: 70 DFTEFLLMIFKLTMACN 86
>gi|4506767 S100 calcium binding protein A5 [Homo sapiens]
Length = 110
Score = 38.1 bits (87), Expect = 0.012
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 246 SPMEHTMETVLFTFHRFAGDKG---YLMKEGLKVLMGKEF-LGFLENQKDPLAADITMKD 301
+P+E + T++ TFH+++G +G L ++ LK L+ KE LG ++ + D MK
Sbjct: 21 TPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKES----SIDDLMKS 76
Query: 302 MDQCQDSTLNFQNLFSLTAGLTTVDNNYFV 331
+D+ D ++F+ L N++F+
Sbjct: 77 LDKNSDQEIDFKEYSVFLTMLCMAYNDFFL 106
>gi|171916097 repetin [Homo sapiens]
Length = 784
Score = 37.0 bits (84), Expect = 0.026
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 254 TVLFTFHRFA---GDKGYLMKEGLKVLMGKEFLGFLENQKDPLAADITMKDMDQCQDSTL 310
+V+ FH++A GD L KE LK L+ EF L+ DP + + +DQ +D +
Sbjct: 10 SVIDVFHKYAKGNGDCALLCKEELKQLLLAEFGDILQRPNDPETVETILNLLDQDRDGHI 69
Query: 311 NFQNLFSL 318
+F L
Sbjct: 70 DFHEYLLL 77
>gi|7657532 S100 calcium-binding protein A6 [Homo sapiens]
Length = 90
Score = 36.6 bits (83), Expect = 0.035
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 247 PMEHTMETVLFTFHRFAG---DKGYLMKEGLKVLMGKEFLGFLENQKDPLAADITMKDMD 303
P++ + ++ FH+++G DK L K+ LK L+ KE + Q +A M+D+D
Sbjct: 4 PLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIAR--LMEDLD 61
Query: 304 QCQDSTLNFQNLFSLTAGLTTVDN 327
+ +D +NFQ + L + N
Sbjct: 62 RNKDQEVNFQEYVTFLGALALIYN 85
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 35.0 bits (79), Expect = 0.10
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 254 TVLFTFHRFA---GDKGYLMKEGLKVLMGKEFLGFLENQKDPLAADITMKDMDQCQDSTL 310
TV+ F+++A G+ L K LK L+ EF L+N DP DI ++ +D+ + +
Sbjct: 10 TVIDVFYQYATQHGEYDTLNKAELKELLENEFHQILKNPNDPDTVDIILQSLDRDHNKKV 69
Query: 311 NF 312
+F
Sbjct: 70 DF 71
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 32.0 bits (71), Expect = 0.85
Identities = 29/109 (26%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 38 TDSSGTPFLPGGSFSPYS-----NHVALVGLPCHPGTLPDAGSLQLSLSHMRSGQRLQAR 92
+ S GTP PG FSP + + PCHP P + S+
Sbjct: 804 SSSPGTPLSPGNPFSPGTPISPGPIFPITSPPCHPSPSPFSPISSQVSSNPSPHPTSSPL 863
Query: 93 PFGSLSPDFSAKLASQVQGAGLEGGGLELLKPTGAGSLTVACEVFRDTP 141
PF S +P+F L SQ + L PT +T++ F P
Sbjct: 864 PFSSSTPEFPVPL-SQCPWSSLPTTSPPTFSPT-CSQVTLSSPFFPPCP 910
>gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens]
Length = 647
Score = 32.0 bits (71), Expect = 0.85
Identities = 38/153 (24%), Positives = 53/153 (34%), Gaps = 33/153 (21%)
Query: 21 PVSRLPPRPRPFVGGVRTDSSGTPFLPGGSF--SPYSNHVAL---VGLPCHPGTLPDAGS 75
PV+ +PP P+P TP P G SP + +A+ + L GT PD
Sbjct: 325 PVAAVPPTPQPLAPTPSAPCPATPAGPKGRVFVSPLAKKLAVEKGIDLTQVKGTGPDG-- 382
Query: 76 LQLSLSHMRSGQRLQARPFGSLSPDFSAKLASQVQGAGLEGGGLELLKPTGAGSLTVACE 135
R+ + S P A + V + PTG G V
Sbjct: 383 ------------RITKKDIDSFVPSKVAPAPAAV------------VPPTGPGMAPVPTG 418
Query: 136 VFRDTPVAAILSFLVS--FQSGPVVCHLYTLSD 166
VF D P++ I + QS + H Y D
Sbjct: 419 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSID 451
>gi|149944526 additional sex combs like 3 [Homo sapiens]
Length = 2248
Score = 31.6 bits (70), Expect = 1.1
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 37 RTDSSGTPFLPGGSFSPYSNHVALVGLPC-----HPGTLPDAGSLQLSLSHMRSGQRLQA 91
R D+SG P P G F+P + + + +PC H TL + SL +S+ + LQ
Sbjct: 1446 RADNSGKPQQPPGGFAPAAINRS---IPCKVIVDHSTTLTSSLSLTVSVESSEASLDLQG 1502
Query: 92 RP 93
RP
Sbjct: 1503 RP 1504
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 30.8 bits (68), Expect = 1.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 269 LMKEGLKVLMGKEFLGFLENQKDPLAADITMKDMDQCQDSTLNF 312
L K+ LK L+ KEF L+N DP D+ M +D + ++F
Sbjct: 28 LSKKELKELLEKEFRQILKNPDDPDMVDVFMDHLDIDHNKKIDF 71
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 30.4 bits (67), Expect = 2.5
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 153 QSGPVVCHLYTLSDQLLFPAFPPHADIPKGRRLLQAGVRVGMPQSKGVQGQSFLGKAKQV 212
Q+ P V T+S + A P HA K + Q+ PQS VQGQS V
Sbjct: 2420 QTQPEVQTQTTVSSHVPSEAQPTHAQSSKPQVAAQS-----QPQSN-VQGQS------PV 2467
Query: 213 LNTAPSRGALRPSLPSAHNAPPAKVSTDLTNNPSPME-HT 251
+PS+ +RPS PS + T+ P P++ HT
Sbjct: 2468 RVQSPSQTRIRPSTPSQLSPGQQSQVQTTTSQPIPIQPHT 2507
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 30.4 bits (67), Expect = 2.5
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 153 QSGPVVCHLYTLSDQLLFPAFPPHADIPKGRRLLQAGVRVGMPQSKGVQGQSFLGKAKQV 212
Q+ P V T+S + A P HA K + Q+ PQS VQGQS V
Sbjct: 2294 QTQPEVQTQTTVSSHVPSEAQPTHAQSSKPQVAAQS-----QPQSN-VQGQS------PV 2341
Query: 213 LNTAPSRGALRPSLPSAHNAPPAKVSTDLTNNPSPME-HT 251
+PS+ +RPS PS + T+ P P++ HT
Sbjct: 2342 RVQSPSQTRIRPSTPSQLSPGQQSQVQTTTSQPIPIQPHT 2381
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 30.0 bits (66), Expect = 3.2
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 218 SRGALRPSLPSAHNAPPAKVSTDLTNNPSPMEHTMETVLFTFHRFAGDKGYLMKEGLKVL 277
+R S+PSA +A PA VS D +++ + + ++ + R AG L +E K
Sbjct: 1807 TRPTCSESVPSAKSANPA-VSKDFSSHDE-INNYLQQIDQLKERIAG----LEEEKQK-- 1858
Query: 278 MGKEFLGFLENQKDPLAADITMKD 301
KEF LEN+K+ L + I+ KD
Sbjct: 1859 -NKEFSQTLENEKNTLLSQISTKD 1881
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 30.0 bits (66), Expect = 3.2
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 27 PRPRPFVGGVRTDSSGTPFLPGGSFSPYSNHVALVGLPCHPGTLPDAGSLQLSLSHMRSG 86
P P P G+ +SGT P GS P + AL P PG P + Q+ L +
Sbjct: 231 PAPPPHSAGMFISASGTYAGPDGSGGP-ALFPALHDTPGAPGGHPHPLNGQMRLGLAAAA 289
Query: 87 QRLQARPFGSLSPDFSAKLASQVQGA 112
A +G P F+ + GA
Sbjct: 290 AAAAAELYGRAEPPFAPRSGDAHYGA 315
>gi|224458301 family with sequence similarity 186, member A [Homo
sapiens]
Length = 2351
Score = 29.6 bits (65), Expect = 4.2
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 13 GRACAALCPVSRLPPRPRPFVGGVRTDSSGTPFLPGGSFSPYSNHVALVGLPCHPG--TL 70
G++ +A P + PP P + G PF+ G P S + + P PG +
Sbjct: 1806 GQSTSAQFPAPQAPPSPGQLPISRAPPTPGQPFIAG--VPPTSGQIPSLWAPLSPGQPLV 1863
Query: 71 PDAGSLQLSLSHMRSGQRLQARPFGSLSPDFSAKLASQVQGAGLEG 116
P+A S+ L + SG + P +A+ + +Q G
Sbjct: 1864 PEASSIPGDL--LESGPLTFSEQLQEFQPPATAEQSPYLQAPSTPG 1907
>gi|110224479 prosaposin isoform c preproprotein [Homo sapiens]
Length = 526
Score = 29.6 bits (65), Expect = 4.2
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 129 SLTVACEVFRDTPVAAILSFLVSFQSGPVVCHLYTLSDQLLFPAFPPHADIPK 181
SL+ C+ DT ++ILS L+ S +VC + L PA H PK
Sbjct: 354 SLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPK 406
>gi|110224476 prosaposin isoform b preproprotein [Homo sapiens]
Length = 527
Score = 29.6 bits (65), Expect = 4.2
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 129 SLTVACEVFRDTPVAAILSFLVSFQSGPVVCHLYTLSDQLLFPAFPPHADIPK 181
SL+ C+ DT ++ILS L+ S +VC + L PA H PK
Sbjct: 355 SLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPK 407
>gi|11386147 prosaposin isoform a preproprotein [Homo sapiens]
Length = 524
Score = 29.6 bits (65), Expect = 4.2
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 129 SLTVACEVFRDTPVAAILSFLVSFQSGPVVCHLYTLSDQLLFPAFPPHADIPK 181
SL+ C+ DT ++ILS L+ S +VC + L PA H PK
Sbjct: 352 SLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPK 404
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,853,137
Number of Sequences: 37866
Number of extensions: 780148
Number of successful extensions: 2371
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2338
Number of HSP's gapped (non-prelim): 58
length of query: 350
length of database: 18,247,518
effective HSP length: 103
effective length of query: 247
effective length of database: 14,347,320
effective search space: 3543788040
effective search space used: 3543788040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.