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Search of human proteins with 239745863
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745863 PREDICTED: hypothetical protein [Homo sapiens]
(208 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745863 PREDICTED: hypothetical protein [Homo sapiens] 431 e-121
gi|239740965 PREDICTED: hypothetical protein XP_002344115 [Homo ... 225 2e-59
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 40 0.001
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 39 0.004
gi|122937321 UNC homeobox [Homo sapiens] 39 0.004
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 38 0.007
gi|239754516 PREDICTED: hypothetical protein [Homo sapiens] 37 0.012
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 37 0.012
gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo ... 37 0.012
gi|239508758 PREDICTED: hypothetical protein [Homo sapiens] 37 0.012
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 37 0.012
gi|47132519 Ras association and pleckstrin homology domains 1 is... 37 0.012
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 37 0.012
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 37 0.012
gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo s... 37 0.016
gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo s... 37 0.016
gi|157785645 SPEG complex locus [Homo sapiens] 36 0.020
gi|169211642 PREDICTED: hypothetical protein [Homo sapiens] 36 0.027
gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo ... 36 0.027
gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo s... 36 0.027
gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo ... 36 0.027
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens] 36 0.027
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 36 0.027
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 35 0.035
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 35 0.035
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 35 0.035
gi|154146199 sal-like 3 [Homo sapiens] 35 0.045
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 35 0.059
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 35 0.059
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 34 0.077
>gi|239745863 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 431 bits (1107), Expect = e-121
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MEGEASRVPRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPH 60
MEGEASRVPRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPH
Sbjct: 1 MEGEASRVPRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPH 60
Query: 61 TAEERKKGPAGPYPPHQPLLLKESSGIAAPSAPFSEALLRFLEVQTPHPPNLDGPRRANR 120
TAEERKKGPAGPYPPHQPLLLKESSGIAAPSAPFSEALLRFLEVQTPHPPNLDGPRRANR
Sbjct: 61 TAEERKKGPAGPYPPHQPLLLKESSGIAAPSAPFSEALLRFLEVQTPHPPNLDGPRRANR 120
Query: 121 NTFLWTCHVGIPDLPALPAPASFLGTQLTLKKASDGPRTEKVTQDLAQPFWTTGRQLRFV 180
NTFLWTCHVGIPDLPALPAPASFLGTQLTLKKASDGPRTEKVTQDLAQPFWTTGRQLRFV
Sbjct: 121 NTFLWTCHVGIPDLPALPAPASFLGTQLTLKKASDGPRTEKVTQDLAQPFWTTGRQLRFV 180
Query: 181 LHLSLQQKDLSKCWRGAEVVLGPTRLFL 208
LHLSLQQKDLSKCWRGAEVVLGPTRLFL
Sbjct: 181 LHLSLQQKDLSKCWRGAEVVLGPTRLFL 208
>gi|239740965 PREDICTED: hypothetical protein XP_002344115 [Homo
sapiens]
Length = 166
Score = 225 bits (573), Expect = 2e-59
Identities = 112/133 (84%), Positives = 117/133 (87%), Gaps = 4/133 (3%)
Query: 76 HQPLLLKESSGIAAPSAPFSEALLRFLEVQTPHPPNLDGPRRANRNTFLWTCHVGIPDLP 135
H PL + +S + S FS + +VQTPHPPNLDGPRRANRNTFLWTCHVGIPDLP
Sbjct: 38 HFPLRVGKSVVLVTTSWRFSPSG----KVQTPHPPNLDGPRRANRNTFLWTCHVGIPDLP 93
Query: 136 ALPAPASFLGTQLTLKKASDGPRTEKVTQDLAQPFWTTGRQLRFVLHLSLQQKDLSKCWR 195
ALPAPASFLGTQLTLKKASDGPRTEKVTQDLAQPFWTTGRQLRFVLHLSLQQKDLSKCWR
Sbjct: 94 ALPAPASFLGTQLTLKKASDGPRTEKVTQDLAQPFWTTGRQLRFVLHLSLQQKDLSKCWR 153
Query: 196 GAEVVLGPTRLFL 208
GAEVVLGPTRLFL
Sbjct: 154 GAEVVLGPTRLFL 166
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 20/111 (18%)
Query: 12 AQAPPRAPPRPAFCRS--APCRSALLAAAADAGGRSARQG------LSSRGPETPPHTAE 63
AQ PP PP R A SA +++ R R+ L RGP+TP
Sbjct: 330 AQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLEGRGPQTP----- 384
Query: 64 ERKKGPAGPYPPHQPLLLKESSGIAAPSAPFSEALLRFLEVQTPHPPNLDG 114
R+ P P P QP L E PS P ++L L + TP P + DG
Sbjct: 385 -RRSRPRAPAPVPQPFSLPE------PSQPILPSVLSLLGLPTPGPSHSDG 428
Score = 29.3 bits (64), Expect = 2.5
Identities = 37/133 (27%), Positives = 46/133 (34%), Gaps = 32/133 (24%)
Query: 8 VPRPAQAPPRAPPRPAFCRSAP-------CRSALLAAAADAGGRSARQGLSS-------- 52
+PR P PP PA +AP RS+L+ +D G A SS
Sbjct: 204 LPRGNAPSPAPPPPPAISLNAPSYNWGAALRSSLV--PSDLGSPPAPHASSSPPSDPPLF 261
Query: 53 ------RGPETPPHTAEERKKGPAGPYP-----PHQPLLLKESSG---IAAPSA-PFSEA 97
P PP GPA P H PL+L G + P A PF +
Sbjct: 262 HCSDALTPPPLPPSNNLPAHPGPASQPPVSSATMHLPLVLGPLGGAPTVEGPGAPPFLAS 321
Query: 98 LLRFLEVQTPHPP 110
L + HPP
Sbjct: 322 SLLSAAAKAQHPP 334
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 38.5 bits (88), Expect = 0.004
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 9 PRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAEERKKG 68
PRP + P P P R+ P + AGG RGP T + +G
Sbjct: 46 PRPGEEPGNRHPPPPAARTHPGSCRARCPSPAAGG--------LRGPWTAAPGRQRADEG 97
Query: 69 PAGPYPPHQPLLLKESSGIAAPSAPFSEALLRFLEVQTPHPPNLDGPR 116
A P Q + + G AA AP +A L + P PP + PR
Sbjct: 98 AAAARPERQRVWARRLPGSAAAPAPGRDA----LRLPPPPPPPPERPR 141
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 38.5 bits (88), Expect = 0.004
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 5 ASRVPRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAEE 64
A R P +P P PA P R AAA + GG + GP PP A
Sbjct: 440 ARRSPDAVASPGAPAPAPA-----PFRDLASAAATEGGGGDCADA-GTAGPAPPP-PAPS 492
Query: 65 RKKGPAGPYPPHQPLL--LKESSGIAAPSAPFSEAL 98
+ GP P P +P + E A PS P E L
Sbjct: 493 PRPGPRPPSPAEEPATCGVPEPGAAAGPSPPEGEEL 528
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 37.7 bits (86), Expect = 0.007
Identities = 47/169 (27%), Positives = 62/169 (36%), Gaps = 23/169 (13%)
Query: 12 AQAPPRAPP---------RPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTA 62
A PPR P +P + + A ++A L AA RSA + GP P A
Sbjct: 330 APGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAVPRARRSANRLPRPSGPRPRPAPA 389
Query: 63 EERKKGPAGPYPPHQPLLLKESSGIAAPSAPFSEALLRFLEVQTP--HPPNLDGPRRANR 120
+ PAG P L L G+ P +EA R + P P P RA R
Sbjct: 390 RSPSQSPAG--TPCPVLSLGARRGVTLPCPVPAEAAPRDFCQRFPALEPSPRQPPARAPR 447
Query: 121 NTFLWTCHVGIPDLPALPAPASFLGTQLTLKKASDGPRTEKVTQDLAQP 169
+ PDLPA P A + A+ GP + A+P
Sbjct: 448 PS---------PDLPA-PLDACPWAPPVYAPPAAPGPYAAWTSSRPARP 486
>gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 334
Score = 37.0 bits (84), Expect = 0.012
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 21 RPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAEERKKGPAGPYPPHQPLL 80
RPA R+A C A A+AG R +G ++ GPE PPH + R+ P G + LL
Sbjct: 205 RPAPDRAARCAPRAKKAGANAGARGQGRG-AAAGPERPPH-VQGRRPAPRGAVGARRALL 262
Score = 29.6 bits (65), Expect = 1.9
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 10 RPAQAPPRAPPRPAFCRSAP-----CRSALLAAAADAGGRSARQGLSSRGPETPPHTAEE 64
R A A P PP R AP R ALL A AGG + + RG E P
Sbjct: 232 RGAAAGPERPPHVQGRRPAPRGAVGARRALLGAVGKAGGLTRARETRRRGEEGVPAAGTP 291
Query: 65 R 65
R
Sbjct: 292 R 292
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 37.0 bits (84), Expect = 0.012
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 21 RPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAEERKKGPAGPYPPHQPLL 80
RPA R+A C A A+AG R +G ++ GPE PPH + R+ P G + LL
Sbjct: 205 RPAPDRAARCAPRAKKAGANAGARGQGRG-AAAGPERPPH-VQGRRPAPRGAVGARRALL 262
Score = 29.6 bits (65), Expect = 1.9
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 10 RPAQAPPRAPPRPAFCRSAP-----CRSALLAAAADAGGRSARQGLSSRGPETPPHTAEE 64
R A A P PP R AP R ALL A AGG + + RG E P
Sbjct: 232 RGAAAGPERPPHVQGRRPAPRGAVGARRALLGAVGKAGGLTRARETRRRGEEGVPAAGTP 291
Query: 65 R 65
R
Sbjct: 292 R 292
>gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo
sapiens]
Length = 329
Score = 37.0 bits (84), Expect = 0.012
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 21 RPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAEERKKGPAGPYPPHQPLL 80
RPA R+A C A A+AG R +G ++ GPE PPH + R+ P G + LL
Sbjct: 200 RPAPDRAARCAPRAKKAGANAGARGQGRG-AAAGPERPPH-VQGRRPAPRGAVGARRALL 257
Score = 29.6 bits (65), Expect = 1.9
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 10 RPAQAPPRAPPRPAFCRSAP-----CRSALLAAAADAGGRSARQGLSSRGPETPPHTAEE 64
R A A P PP R AP R ALL A AGG + + RG E P
Sbjct: 227 RGAAAGPERPPHVQGRRPAPRGAVGARRALLGAVGKAGGLTRARETRRRGEEGVPAAGTP 286
Query: 65 R 65
R
Sbjct: 287 R 287
>gi|239508758 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 37.0 bits (84), Expect = 0.012
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 21 RPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAEERKKGPAGPYPPHQPLL 80
RPA R+A C A A+AG R +G ++ GPE PPH + R+ P G + LL
Sbjct: 200 RPAPDRAARCAPRAKKAGANAGARGQGRG-AAAGPERPPH-VQGRRPAPRGAVGARRALL 257
Score = 29.6 bits (65), Expect = 1.9
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 10 RPAQAPPRAPPRPAFCRSAP-----CRSALLAAAADAGGRSARQGLSSRGPETPPHTAEE 64
R A A P PP R AP R ALL A AGG + + RG E P
Sbjct: 227 RGAAAGPERPPHVQGRRPAPRGAVGARRALLGAVGKAGGLTRARETRRRGEEGVPAAGTP 286
Query: 65 R 65
R
Sbjct: 287 R 287
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 37.0 bits (84), Expect = 0.012
Identities = 47/165 (28%), Positives = 56/165 (33%), Gaps = 37/165 (22%)
Query: 19 PPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAEERKKGPAGPYPPHQP 78
PP P P A AG ++ L+ +GP PP GP GP P P
Sbjct: 822 PPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPP--------GPRGPPGPSIP 873
Query: 79 LLLKESSGIAAPSAPFSEALLRFLEVQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPALP 138
G P P E L P PP G +N TFL G P P P
Sbjct: 874 -------GPPGPRGPPGEGL--------PGPPGPPGSFLSNSETFL----SGPPGPPGPP 914
Query: 139 APASFLGTQLTLKKASDGPRTEKVTQDLAQPFWTTGRQLRFVLHL 183
P G GPR + Q L P ++T F L+L
Sbjct: 915 GPKGDQG--------PPGPRGHQGEQGL--PGFSTSGSSSFGLNL 949
Score = 31.2 bits (69), Expect = 0.65
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 43 GRSARQG-LSSRGPETPPHTAEERKKGPAGPYPPHQP------LLLKESSGIAAPSAP 93
G+ R+G + RG PP + E+ ++G AG PH P + K SSG P P
Sbjct: 621 GQRGREGPMGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGP 678
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 37.0 bits (84), Expect = 0.012
Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 26/117 (22%)
Query: 9 PRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAEERKKG 68
P PA PP+APP+P AP + +A ++ P TP KK
Sbjct: 768 PIPAPLPPQAPPKPLVTIPAPTSTKTVAPV-----------VTQAAPPTPTPPVPPAKKQ 816
Query: 69 PA------------GPYPPHQPLLLKESSGIA-APSAPFS--EALLRFLEVQTPHPP 110
PA P P P L K+ S A P +P S ++++ + Q P PP
Sbjct: 817 PAFPASYIPPSPPTPPVPVPPPTLPKQQSFCAKPPPSPLSPVPSVVKQIASQFPPPP 873
Score = 28.9 bits (63), Expect = 3.2
Identities = 30/115 (26%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 9 PRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRG-----PETPPHTAE 63
P P PP PP P +SAP + + Q S P TPP
Sbjct: 635 PPPPPPPPPPPPPPLPSQSAPSAGSAAPMFVKYSTITRLQNASQHSGALFKPPTPPVMQS 694
Query: 64 ERKK--------GPAGPYPPHQPLLLKESSGIAAPSAPFSEALLRFLEVQTPHPP 110
+ K G P PP P S+ AP + +L +F P PP
Sbjct: 695 QSVKPQILVPPNGVVPPPPPPPPPPTPGSAMAQLKPAPCAPSLPQF---SAPPPP 746
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 37.0 bits (84), Expect = 0.012
Identities = 49/183 (26%), Positives = 64/183 (34%), Gaps = 25/183 (13%)
Query: 9 PRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAEERKKG 68
P P +PPRAP P+ P + + S + L P PP A
Sbjct: 577 PAPVPSPPRAPTPPSTPVPLPEKRRSILREPTFRWTSLTRELPPPPPAPPPPPAPSPPPA 636
Query: 69 PAGPYPPHQPLLLKESSGIAAPSAPFSEALLRFLE-VQTP------------HPPNLDGP 115
PA +PLLL+ AP SEA L+ E V TP PP D P
Sbjct: 637 PA--TSSRRPLLLR------APQFTPSEAHLKIYESVLTPPPLGAPEAPEPEPPPADDSP 688
Query: 116 RRANRNTFLWTCHVGIPDL-PALPAPASFLGTQLTLKKASDGPRTEKVTQDLAQPFWTTG 174
T H+ +P P + P + S+GP+T+ L QP
Sbjct: 689 AEPEPRAVGRTNHLSLPRFAPVVTTPVKAEVSPHGAPALSNGPQTQ---AQLLQPLQALQ 745
Query: 175 RQL 177
QL
Sbjct: 746 TQL 748
Score = 27.3 bits (59), Expect = 9.4
Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 1 MEGEASRVPRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPH 60
M GE VP P + PP P +AP S L G + P PP
Sbjct: 2204 MAGEGEPVPPPVKQPPLP---PTISPTAP-TSWTLPPGPLLGVLPVVGVVRPAPPPPPPP 2259
Query: 61 TAEERKKGPAGPYPPHQPLLLKESSGIAAPSAP 93
GPA PP Q + +K S + S P
Sbjct: 2260 LTLVLSSGPAS--PPRQAIRVKRVSTFSGRSPP 2290
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 37.0 bits (84), Expect = 0.012
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 11 PAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAEERKKGPA 70
P+QA P P PA A R+A L A AG G S P PP A P+
Sbjct: 107 PSQAFPAHPEAPA----AAARAAALVAHPGAGSYPCGGGSSGAQPSAPPPPAPPLPPTPS 162
Query: 71 GPYPPHQP 78
P PP P
Sbjct: 163 PPPPPPPP 170
Score = 31.2 bits (69), Expect = 0.65
Identities = 40/145 (27%), Positives = 50/145 (34%), Gaps = 31/145 (21%)
Query: 3 GEASRVPRPAQAPPRAPPRPAFCR--------SAPCRSALLAAAADAGGRSA-------- 46
G S +P+ PP APP P P S + GG S
Sbjct: 139 GGGSSGAQPSAPPPPAPPLPPTPSPPPPPPPPPPPALSGYTTTNSGGGGSSGKGHSRDFV 198
Query: 47 -RQGLSSRGPETPPHTAE---ERKKGPAGPY----PPHQPLLLKESSG-IAAPSAPFSEA 97
R+ LS+ P H A E++ G P PPH + +SG A P A
Sbjct: 199 LRRDLSATAPAAAMHGAPLGGEQRSGTGSPQHPAPPPHSAGMFISASGTYAGPDGSGGPA 258
Query: 98 LLRFLEVQTP-----HPPNLDGPRR 117
L L TP HP L+G R
Sbjct: 259 LFPALH-DTPGAPGGHPHPLNGQMR 282
>gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo
sapiens]
Length = 634
Score = 36.6 bits (83), Expect = 0.016
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 6 SRVPRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAEER 65
S P PP APP+P + P +S + A AG S +G E PP +
Sbjct: 147 SETPAAPALPPSAPPKPR-PKPKPKKSPVPPKGATAGA-------SHKGDEVPPIKKNTK 198
Query: 66 KKGPAGPYPPHQP 78
G P PP +P
Sbjct: 199 APGKQAPVPPPKP 211
>gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo
sapiens]
Length = 645
Score = 36.6 bits (83), Expect = 0.016
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 6 SRVPRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAEER 65
S P PP APP+P + P +S + A AG S +G E PP +
Sbjct: 158 SETPAAPALPPSAPPKPR-PKPKPKKSPVPPKGATAGA-------SHKGDEVPPIKKNTK 209
Query: 66 KKGPAGPYPPHQP 78
G P PP +P
Sbjct: 210 APGKQAPVPPPKP 222
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 36.2 bits (82), Expect = 0.020
Identities = 41/148 (27%), Positives = 52/148 (35%), Gaps = 13/148 (8%)
Query: 4 EASRVPRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAE 63
++S VP A RPA R ++L A A +S P TPP A
Sbjct: 2773 DSSAVPSAAHQEAPVTSRPARARPPDSPTSLAPPLAPAAPTPPSVTVSPSSPPTPPSQAL 2832
Query: 64 ERKKGPAGPYPPHQPLLLKESSGIAAPSAPF--------SEALLRFLEVQTPHP---PNL 112
K GP PP P A P+ P SE L+ TP P P
Sbjct: 2833 SSLKA-VGP-PPQTPPRRHRGLQAARPAEPTLPSTHVTPSEPKPFVLDTGTPIPASTPQG 2890
Query: 113 DGPRRANRNTFLWTCHVGIPDLPALPAP 140
P ++ ++ T V P P PAP
Sbjct: 2891 VKPVSSSTPVYVVTSFVSAPPAPEPPAP 2918
>gi|169211642 PREDICTED: hypothetical protein [Homo sapiens]
Length = 378
Score = 35.8 bits (81), Expect = 0.027
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 16/106 (15%)
Query: 1 MEGEASRVPRPAQAPPRAPPRPA--FCRSAPCRSA--------LLAAAADAGGRSARQGL 50
++ A++ P+PA A P P+ R+ P + A L D G AR
Sbjct: 241 LQAAAAQRPQPAPAASPGAPGPSRPAARAQPAQRARGPGVGARLAGVTRDGRGGPARDAA 300
Query: 51 SS--RGPETPPHTAEERKKGPAGPYPP----HQPLLLKESSGIAAP 90
S GP + RK+G A P PP QP +L + S ++P
Sbjct: 301 RSPQAGPGSEGSRPSSRKRGEAAPAPPKSPNRQPFVLPDVSKASSP 346
>gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo
sapiens]
Length = 144
Score = 35.8 bits (81), Expect = 0.027
Identities = 31/95 (32%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 3 GEASRVPRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTA 62
G AS RP + R P A S P + LL A G R + R P PP A
Sbjct: 22 GPASGATRPPRRRVRGSPWHAAGASFPAPAQLLLPAPPPGSRVSLGSAPGRPP--PPALA 79
Query: 63 EERKKGPAGPYPPHQPLLLKESSGIAAPSAPFSEA 97
R PP P+L++ G A P FS A
Sbjct: 80 ARRA-------PPAPPVLIQLRGGDAHPPPAFSRA 107
>gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo
sapiens]
Length = 378
Score = 35.8 bits (81), Expect = 0.027
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 16/106 (15%)
Query: 1 MEGEASRVPRPAQAPPRAPPRPA--FCRSAPCRSA--------LLAAAADAGGRSARQGL 50
++ A++ P+PA A P P+ R+ P + A L D G AR
Sbjct: 241 LQAAAAQRPQPAPAASPGAPGPSRPAARAQPAQRARGPGVGARLAGVTRDGRGGPARDAA 300
Query: 51 SS--RGPETPPHTAEERKKGPAGPYPP----HQPLLLKESSGIAAP 90
S GP + RK+G A P PP QP +L + S ++P
Sbjct: 301 RSPQAGPGSEGSRPSSRKRGEAAPAPPKSPNRQPFVLPDVSKASSP 346
>gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo
sapiens]
Length = 144
Score = 35.8 bits (81), Expect = 0.027
Identities = 31/95 (32%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 3 GEASRVPRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTA 62
G AS RP + R P A S P + LL A G R + R P PP A
Sbjct: 22 GPASGATRPPRRRVRGSPWHAAGASFPAPAQLLLPAPPPGSRVSLGSAPGRPP--PPALA 79
Query: 63 EERKKGPAGPYPPHQPLLLKESSGIAAPSAPFSEA 97
R PP P+L++ G A P FS A
Sbjct: 80 ARRA-------PPAPPVLIQLRGGDAHPPPAFSRA 107
>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
Length = 977
Score = 35.8 bits (81), Expect = 0.027
Identities = 46/189 (24%), Positives = 66/189 (34%), Gaps = 33/189 (17%)
Query: 9 PRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAEERKKG 68
P P AP P +P RS P D+ + GP T R++G
Sbjct: 112 PEPPGAPVPQPLQPGSLRSPP----------DSEAYYGETDSDADGPATQEKPRRPRRRG 161
Query: 69 PAGPYPPHQP---LLLKESSGIAAPSAPFSEALLRFLEVQTPHPPNLDGPRRANRNTFLW 125
P P PP P + L +S AP+ P PP+ G R + ++
Sbjct: 162 PTRPTPPGAPPDEVYLSDSPAEPAPTIP--------------GPPS-QGDSRVSSPSWED 206
Query: 126 TCHVGIPDLPALPAPASFL--GTQLTLKKASDGPRTEKVTQDLAQPFWTTGRQLRFVLHL 183
+ P AL P L G L GP V +DL + +Q +
Sbjct: 207 GAALQPPPAEALLLPHGPLRPGPHLI---PMVGPVPHPVAEDLTTTYTQKAKQAKLQRAE 263
Query: 184 SLQQKDLSK 192
SLQ+K + +
Sbjct: 264 SLQEKSIKE 272
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 35.8 bits (81), Expect = 0.027
Identities = 40/145 (27%), Positives = 54/145 (37%), Gaps = 34/145 (23%)
Query: 5 ASRVPRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPHTAEE 64
A++ ++ PPR P P RS P AA + R ++ +R PP +
Sbjct: 529 ATKERTESEVPPR-PASPKVTRSPP----ETAAPVEDMARRTKRPAPARPTMPPPQVSGS 583
Query: 65 RKKGPAGPYPPHQPLLLKESSGIAAPSAP------FSEALLRFLEVQTPHPPNLDGP-RR 117
R PA P PP G +P P + LR V P PP P RR
Sbjct: 584 RSSPPAPPLPP----------GSGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPARR 633
Query: 118 ANRNTFLWTCHVGIPDLPALPAPAS 142
+R + PA P+PAS
Sbjct: 634 QSRRS------------PASPSPAS 646
Score = 33.1 bits (74), Expect = 0.17
Identities = 42/146 (28%), Positives = 56/146 (38%), Gaps = 25/146 (17%)
Query: 1 MEGEASRVPRPAQAPP-RAPPRPAFCRSAPCRSALLAAAADAGGRSARQ----GLSSRGP 55
+E A R RPA A P PP+ + RS+P L + G A G S R P
Sbjct: 558 VEDMARRTKRPAPARPTMPPPQVSGSRSSPPAPPLPPGSGSPGTPQALPRRLVGSSLRAP 617
Query: 56 ETPPHTAEERKKGPAGPYPPHQPLLLKESSGIAAPSAPFSEALLRFLEVQTPHPPNLDGP 115
PP P P PP QP + A+PS P S +P P +L P
Sbjct: 618 TVPP---------PLPPTPP-QPARRQSRRSPASPS-PASPG------PASPSPVSLSNP 660
Query: 116 RRANRNTFLWTCHVGIPD-LPALPAP 140
+ + T G P+ + +P P
Sbjct: 661 AQVDLGAA--TAEGGAPEAISGVPTP 684
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 35.4 bits (80), Expect = 0.035
Identities = 34/98 (34%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 2 EGEASRVPRPAQAPPRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPE----- 56
EG ++VP A PP APP PA R R + R R G R P
Sbjct: 1129 EGTLTQVPL-APPPPGAPPSPAPARFT-ARGGRVFTPRGVPSRRGRGG--GRPPPQVCPG 1184
Query: 57 -TPPHTAEERKKGPAGPYPP-HQPLLLKESSGIAAPSA 92
+PP + KK P GP PP +PL K G +P A
Sbjct: 1185 WSPPAKSLAPKKPPTGPLPPSKEPLKEKLIPGPLSPVA 1222
Score = 30.0 bits (66), Expect = 1.5
Identities = 38/153 (24%), Positives = 52/153 (33%), Gaps = 18/153 (11%)
Query: 5 ASRVPRPAQAP-----PRAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPP 59
A P PA AP P P + +S P A +GG S S +P
Sbjct: 530 APPAPPPASAPTPETEPEEPAQAPPAQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPV 589
Query: 60 HTAEERKKGPAGPY---PPHQPLLLK---ESSGIAAPSAPFSEALLRFLEVQTPHPPNLD 113
K+GP P PP P + K + GI P S+ L + + Q PP
Sbjct: 590 EPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQG-LGYPKYQKSLPPRFQ 648
Query: 114 GPRR----ANRNTFLWTCHV--GIPDLPALPAP 140
++ + W H P P P+P
Sbjct: 649 RQQQEQLLKQQQQHQWQQHQQGSAPPTPVPPSP 681
Score = 28.5 bits (62), Expect = 4.2
Identities = 34/126 (26%), Positives = 44/126 (34%), Gaps = 25/126 (19%)
Query: 9 PRPAQAPP--------RAPPRPAFCRSAPCRSALLAAAADAGGRSARQGLSSRGPETPPH 60
PRP PP + PP + P + GR +G+ S G PP
Sbjct: 861 PRPLPWPPGSDEVAKIQTPPP----KKEPPKEETAQLTGPEAGRKPARGVGSGGQGPPPP 916
Query: 61 TAEERKKGPAGP--------YPPHQPLLLKESSG-IAAPSAP--FSEALLRFLEV--QTP 107
E R + GP PP +P +G I P P E + LE +TP
Sbjct: 917 RRESRTETRWGPRPGSSRRGIPPEEPGAPPRRAGPIKKPPPPTKVEELPPKPLEQGDETP 976
Query: 108 HPPNLD 113
PP D
Sbjct: 977 KPPKPD 982
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 35.4 bits (80), Expect = 0.035
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 2 EGEASRVPRPAQAPPRAPPRPAFC---RSAPCRSALLAA--AADAGGRS-----ARQGLS 51
E A P P +A RA PRP R +P + A A+ AAD G++ A L
Sbjct: 734 EATALAAPSPPRARARAAPRPLGAHGRRRSPAKRAEAASMLAADVRGKTRSLGRAEVALG 793
Query: 52 SRGPETPPHTAEERKKG--PAGP--YPP--HQPLLLKESSGIAAPSAP 93
++GP P ++ K+ PA P PP P K ++ + AP P
Sbjct: 794 AQGPREKPAPPQKAKRSVPPASPARAPPATETPGPEKAATDLPAPETP 841
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 35.4 bits (80), Expect = 0.035
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 2 EGEASRVPRPAQAPPRAPPRPAFC---RSAPCRSALLAA--AADAGGRS-----ARQGLS 51
E A P P +A RA PRP R +P + A A+ AAD G++ A L
Sbjct: 729 EATALAAPSPPRARARAAPRPLGAHGRRRSPAKRAEAASMLAADVRGKTRSLGRAEVALG 788
Query: 52 SRGPETPPHTAEERKKG--PAGP--YPP--HQPLLLKESSGIAAPSAP 93
++GP P ++ K+ PA P PP P K ++ + AP P
Sbjct: 789 AQGPREKPAPPQKAKRSVPPASPARAPPATETPGPEKAATDLPAPETP 836
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 35.0 bits (79), Expect = 0.045
Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 9 PRPAQAPPRAPPRPAFCRSA-------PCRSALLAAAADAGGRSARQGLSSRGPETPPHT 61
PRP+ +P AP P S P + AAA G +A P + P +
Sbjct: 238 PRPSLSPAAAPSAPGPAPSQLPGLAALPLSAGAPAAAIAGSGPAAPAAFEGAQPLSRPES 297
Query: 62 AEERKKGPAGPYPPHQPLLLKESSGIAAPSAPFSEALLRFLEVQTP 107
GPA P P P + A AP S A + TP
Sbjct: 298 GASTPGGPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQPQSASTP 343
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 34.7 bits (78), Expect = 0.059
Identities = 46/177 (25%), Positives = 59/177 (33%), Gaps = 45/177 (25%)
Query: 9 PRPAQAPPRAPP-----------------RPAFCRSAPCRSALLAAAADAGGRSARQGLS 51
P+PA PPR P RP P ++ALLA + +
Sbjct: 882 PKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALLAFGVAS---------A 932
Query: 52 SRGPETPPHTAEERKKGPAGPYPPHQPLLLKESSGIAAPSAPFSEALLRFLEVQTPHPPN 111
+ GP P + + PA P +P L + G+ P AP S A+ Q P PP
Sbjct: 933 TPGPAAPLPSPTPGESPPASSLPQPEPSSL-PAQGVPTPLAP-SPAM------QPPVPP- 983
Query: 112 LDGPRRANRNTFLWTCHVGIPDLPA----------LPAPASFLGTQLTLKKASDGPR 158
GP + W P PA P P S TQL PR
Sbjct: 984 CPGPGLESSAASRWNGETEPPAAPAALLKVPGAGTAPKPVSVACTQLAFSGPKLAPR 1040
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 34.7 bits (78), Expect = 0.059
Identities = 46/177 (25%), Positives = 59/177 (33%), Gaps = 45/177 (25%)
Query: 9 PRPAQAPPRAPP-----------------RPAFCRSAPCRSALLAAAADAGGRSARQGLS 51
P+PA PPR P RP P ++ALLA + +
Sbjct: 964 PKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALLAFGVAS---------A 1014
Query: 52 SRGPETPPHTAEERKKGPAGPYPPHQPLLLKESSGIAAPSAPFSEALLRFLEVQTPHPPN 111
+ GP P + + PA P +P L + G+ P AP S A+ Q P PP
Sbjct: 1015 TPGPAAPLPSPTPGESPPASSLPQPEPSSL-PAQGVPTPLAP-SPAM------QPPVPP- 1065
Query: 112 LDGPRRANRNTFLWTCHVGIPDLPA----------LPAPASFLGTQLTLKKASDGPR 158
GP + W P PA P P S TQL PR
Sbjct: 1066 CPGPGLESSAASRWNGETEPPAAPAALLKVPGAGTAPKPVSVACTQLAFSGPKLAPR 1122
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 34.3 bits (77), Expect = 0.077
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 2 EGEASRVPRPAQAPPRAPPRPAFCRSAPCR------SALLAAAADAGGRSARQGLSSRGP 55
E A RVP+PA APPR PP+ A SA R + L + Q L GP
Sbjct: 260 EAWARRVPQPA-APPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSLCGLGP 318
Query: 56 E---TPPHTAEERKKGPAGPYPPHQP 78
P TA ++ P G P P
Sbjct: 319 PCAGCPWPTAGPGRRSPGGTSPERSP 344
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,887,563
Number of Sequences: 37866
Number of extensions: 628013
Number of successful extensions: 5396
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 471
Number of HSP's that attempted gapping in prelim test: 4566
Number of HSP's gapped (non-prelim): 1245
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.