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Search of human proteins with 239745712
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745712 PREDICTED: hypothetical protein XP_002343531 [Homo
sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751222 PREDICTED: hypothetical protein XP_002347759 [Homo ... 199 4e-52
gi|239745712 PREDICTED: hypothetical protein XP_002343531 [Homo ... 199 4e-52
gi|74229017 2'-5'-oligoadenylate synthetase 2 isoform 2 [Homo sa... 30 0.42
gi|74229019 2'-5'-oligoadenylate synthetase 2 isoform 1 [Homo sa... 30 0.42
gi|114326552 MON2 homolog [Homo sapiens] 29 0.93
gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo sapi... 28 1.2
gi|153792298 piwi-like 3 [Homo sapiens] 28 1.2
gi|188528675 slit homolog 1 [Homo sapiens] 28 2.1
gi|4758378 vascular endothelial growth factor D preproprotein [H... 27 2.7
gi|209977056 transmembrane protein 51 [Homo sapiens] 27 2.7
gi|209977054 transmembrane protein 51 [Homo sapiens] 27 2.7
gi|209977052 transmembrane protein 51 [Homo sapiens] 27 2.7
gi|8922277 transmembrane protein 51 [Homo sapiens] 27 2.7
gi|54607086 eukaryotic elongation factor, selenocysteine-tRNA-sp... 27 2.7
gi|11342670 azurocidin 1 preproprotein [Homo sapiens] 27 3.5
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 27 3.5
gi|81295809 pericentrin [Homo sapiens] 27 3.5
gi|74229011 2',5'-oligoadenylate synthetase 1 isoform 2 [Homo sa... 26 6.0
gi|122937293 tubulin tyrosine ligase-like family, member 8 [Homo... 26 6.0
gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [H... 26 7.8
gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H... 26 7.8
gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens] 26 7.8
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 26 7.8
gi|14150064 polymerase (RNA) III (DNA directed) polypeptide G (3... 26 7.8
gi|12656655 cadherin 19, type 2 preproprotein [Homo sapiens] 26 7.8
>gi|239751222 PREDICTED: hypothetical protein XP_002347759 [Homo
sapiens]
Length = 95
Score = 199 bits (506), Expect = 4e-52
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MRWGRQRRGGWFPRPQCSPHSVCLQVSTQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSV 60
MRWGRQRRGGWFPRPQCSPHSVCLQVSTQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSV
Sbjct: 1 MRWGRQRRGGWFPRPQCSPHSVCLQVSTQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSV 60
Query: 61 ERKEWLERVARTLRFPSTARFPRQPLGSGGILLLR 95
ERKEWLERVARTLRFPSTARFPRQPLGSGGILLLR
Sbjct: 61 ERKEWLERVARTLRFPSTARFPRQPLGSGGILLLR 95
>gi|239745712 PREDICTED: hypothetical protein XP_002343531 [Homo
sapiens]
Length = 95
Score = 199 bits (506), Expect = 4e-52
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MRWGRQRRGGWFPRPQCSPHSVCLQVSTQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSV 60
MRWGRQRRGGWFPRPQCSPHSVCLQVSTQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSV
Sbjct: 1 MRWGRQRRGGWFPRPQCSPHSVCLQVSTQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSV 60
Query: 61 ERKEWLERVARTLRFPSTARFPRQPLGSGGILLLR 95
ERKEWLERVARTLRFPSTARFPRQPLGSGGILLLR
Sbjct: 61 ERKEWLERVARTLRFPSTARFPRQPLGSGGILLLR 95
>gi|74229017 2'-5'-oligoadenylate synthetase 2 isoform 2 [Homo
sapiens]
Length = 687
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 28 TQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSVERKEWL 66
+QL + R +L PA+P D GG + E KEWL
Sbjct: 626 SQLQKTRPVILDPAEPTGDVGGGDRWCWHLLAKEAKEWL 664
>gi|74229019 2'-5'-oligoadenylate synthetase 2 isoform 1 [Homo
sapiens]
Length = 719
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 28 TQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSVERKEWL 66
+QL + R +L PA+P D GG + E KEWL
Sbjct: 626 SQLQKTRPVILDPAEPTGDVGGGDRWCWHLLAKEAKEWL 664
>gi|114326552 MON2 homolog [Homo sapiens]
Length = 1717
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 20 HSVCLQVSTQLCQR-RGTVLAPAQPRADSGGSGEVVQSQSSVERKEWLERVARTL----R 74
H+V +V L R R + + + +SGG ++ K+W E TL R
Sbjct: 1065 HTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVAR 1124
Query: 75 FPSTARFPRQPLG 87
+T R+ QPLG
Sbjct: 1125 IFNTRRYLLQPLG 1137
>gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo
sapiens]
Length = 262
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 27 STQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSVERK------EWLERVARTLRFPSTAR 80
+T R GT APA+P + + Q RK E V T + P T R
Sbjct: 50 TTTTTNRPGTTRAPAKPPGSGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTR 109
Query: 81 FPRQPLGS 88
P LG+
Sbjct: 110 APANTLGN 117
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 22 VCLQVSTQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSVERKEWLERVARTLRFPSTARF 81
VCL S +RG+ D + V+ SSV ++ W T P T R
Sbjct: 10 VCLAFSLATLVQRGS------GDFDDFNLEDAVKETSSV-KQPWDHTTTTTTNRPGTTRA 62
Query: 82 PRQPLGSG 89
P +P GSG
Sbjct: 63 PAKPPGSG 70
>gi|153792298 piwi-like 3 [Homo sapiens]
Length = 882
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 24 LQVSTQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSVE 61
LQ + + Q V+ P QPRA GG+G QSQ E
Sbjct: 41 LQSTPRPLQEEVPVVRPLQPRAARGGAGGGAQSQGVKE 78
>gi|188528675 slit homolog 1 [Homo sapiens]
Length = 1534
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 6 QRRGGWFPRPQCSPHSVCLQVSTQLCQRRGTVLAPAQPR 44
Q GG PRPQC CL + + L P+
Sbjct: 723 QEEGGCLPRPQCPQECACLDTVVRCSNKHLRALPKGIPK 761
>gi|4758378 vascular endothelial growth factor D preproprotein [Homo
sapiens]
Length = 354
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 14 RPQCSPHSVCLQVSTQLCQRRGTVLAP 40
R QCSP C++V+++L + T P
Sbjct: 108 RTQCSPRETCVEVASELGKSTNTFFKP 134
>gi|209977056 transmembrane protein 51 [Homo sapiens]
Length = 253
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 21 SVCLQVSTQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSVERKEWLERVARTLRFPS 77
S+CL + + QR+G LA Q G+G Q + S E +E E A PS
Sbjct: 80 SICLSIRDKRKQRQGEDLAHVQ---HPTGAGPHAQEEDSQEEEEEDEEAASRYYVPS 133
>gi|209977054 transmembrane protein 51 [Homo sapiens]
Length = 253
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 21 SVCLQVSTQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSVERKEWLERVARTLRFPS 77
S+CL + + QR+G LA Q G+G Q + S E +E E A PS
Sbjct: 80 SICLSIRDKRKQRQGEDLAHVQ---HPTGAGPHAQEEDSQEEEEEDEEAASRYYVPS 133
>gi|209977052 transmembrane protein 51 [Homo sapiens]
Length = 253
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 21 SVCLQVSTQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSVERKEWLERVARTLRFPS 77
S+CL + + QR+G LA Q G+G Q + S E +E E A PS
Sbjct: 80 SICLSIRDKRKQRQGEDLAHVQ---HPTGAGPHAQEEDSQEEEEEDEEAASRYYVPS 133
>gi|8922277 transmembrane protein 51 [Homo sapiens]
Length = 253
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 21 SVCLQVSTQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSVERKEWLERVARTLRFPS 77
S+CL + + QR+G LA Q G+G Q + S E +E E A PS
Sbjct: 80 SICLSIRDKRKQRQGEDLAHVQ---HPTGAGPHAQEEDSQEEEEEDEEAASRYYVPS 133
>gi|54607086 eukaryotic elongation factor,
selenocysteine-tRNA-specific [Homo sapiens]
Length = 596
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 37 VLAPAQPRADSGGSGEVVQSQSSVERKEWLERVARTLRF 75
+L PA + G GE + + S ER E + V +L F
Sbjct: 543 ILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSLTF 581
>gi|11342670 azurocidin 1 preproprotein [Homo sapiens]
Length = 251
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 16/47 (34%)
Query: 3 WGRQRRGGWF------------PRPQCSPHSVCLQVSTQLCQRRGTV 37
WG QR GG P QC P++VC V T RRG +
Sbjct: 154 WGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNVCTGVLT----RRGGI 196
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 49 GSGEVVQSQSSVERKEWLERVARTLRFPSTARFPRQPLGSGG 90
GS EV + Q+ +KE + L P R P + +GSGG
Sbjct: 869 GSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKPARGVGSGG 910
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 14 RPQCSPHSVCLQVSTQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSVERKEWLERVARTL 73
R C LQ+ + L + + A Q G G +QSQ E+ L+R +++
Sbjct: 2625 RSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSA 2684
Query: 74 R 74
+
Sbjct: 2685 K 2685
>gi|74229011 2',5'-oligoadenylate synthetase 1 isoform 2 [Homo
sapiens]
Length = 364
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 29 QLCQRRGTVLAPAQPRADSGGSGEVVQSQSSVERKEWLERVARTLRFPSTARFPRQPLGS 88
QL + R +L PA P + GG Q + E + W L +P + P+ S
Sbjct: 290 QLTKPRPVILDPADPTGNLGGGDPKGWRQLAQEAEAW-------LNYPCFKNWDGSPV-S 341
Query: 89 GGILLLR 95
ILL+R
Sbjct: 342 SWILLVR 348
>gi|122937293 tubulin tyrosine ligase-like family, member 8 [Homo
sapiens]
Length = 834
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 13 PRPQCSPHSVCLQVSTQLCQRRG---TVLAPAQPRADSGGSGEVVQSQSS 59
P P P S LQ L + +G +LAP + A+SGG+ + +++++
Sbjct: 623 PDPAQGPPSPALQRDLGLKEEKGLPLALLAPLRGAAESGGAAQPTRTKAA 672
>gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [Homo
sapiens]
Length = 1379
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 52 EVVQSQSSVERKEWLERVARTLRFPSTAR 80
E Q Q VE+ WL+ V RTL PS R
Sbjct: 850 EAQQLQRQVEQARWLDEVKRTLA-PSARR 877
>gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo
sapiens]
Length = 1560
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 52 EVVQSQSSVERKEWLERVARTLRFPSTAR 80
E Q Q VE+ WL+ V RTL PS R
Sbjct: 917 EAQQLQRQVEQARWLDEVKRTLA-PSARR 944
>gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens]
Length = 2458
Score = 25.8 bits (55), Expect = 7.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 59 SVERKEWLERVARTLRFPS 77
S++ KEW++++ TLR PS
Sbjct: 1018 SIKLKEWVQKLMMTLRHPS 1036
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 GRQRRGGWFPRPQCSPHSVCLQVSTQLCQRRGTVLAPAQPRADSG 48
G QR GGW P P S C+ ++ + RG P + R G
Sbjct: 269 GGQRAGGWQPGP--SVRESCIDMAGRERPSRGAGQRPQRVRGSVG 311
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 GRQRRGGWFPRPQCSPHSVCLQVSTQLCQRRGTVLAPAQPRADSG 48
G QR GGW P P S C+ ++ + RG P + R G
Sbjct: 269 GGQRAGGWQPGP--SVRESCIDMAGRERPSRGAGQRPQRVRGSVG 311
>gi|14150064 polymerase (RNA) III (DNA directed) polypeptide G
(32kD) like [Homo sapiens]
Length = 218
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 11 WFPRPQCSPHSVCLQVSTQLCQRRGTVLAPAQPRADSGGSGEVVQSQSSVERKE 64
W P + P + ++V +L + R T+L P +P + E +Q ++E+KE
Sbjct: 106 WNPDWRRLPRELKIRVR-KLQKERITILLPKRPPKTTEDKEETIQKLETLEKKE 158
>gi|12656655 cadherin 19, type 2 preproprotein [Homo sapiens]
Length = 772
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 46 DSGGSGEVVQSQSSVERKEWLE 67
++ GSG+V+Q+ S+V+R E +E
Sbjct: 480 ENAGSGQVIQTISAVDRDESIE 501
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,225,129
Number of Sequences: 37866
Number of extensions: 170382
Number of successful extensions: 554
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 29
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.