Guide to the Human Genome
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Name: LOC100287805 Sequence: fasta or formatted (95aa) NCBI GI: 239745712
Description:

PREDICTED: hypothetical protein XP_002343531

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          5           1
 C cysteine            3.2          3           1
 D aspartate           1.1          1           1
 E glutamate           4.2          4           1
 F phenylalanine       3.2          3           1
 G glycine            10.5         10           2
 H histidine           1.1          1           1
 I isoleucine          1.1          1           1
 K lysine              1.1          1           1
 L leucine             9.5          9           3
 M methionine          1.1          1           1
 N asparagine          0.0          0           0
 P proline             8.4          8           1
 Q glutamine           9.5          9           1
 R arginine           15.8         15           2
 S serine             10.5         10           2
 T threonine           4.2          4           1
 V valine              7.4          7           2
 W tryptophan          3.2          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343531 
LOC100291444          1.000   PREDICTED: hypothetical protein XP_002347759 
OAS2                  0.029   2'-5'-oligoadenylate synthetase 2 isoform 2 
OAS2                  0.029   2'-5'-oligoadenylate synthetase 2 isoform 1 
MON2                  0.023   MON2 homolog 
CD99L2                0.017   CD99 antigen-like 2 isoform E3'-E4'-E3-E4 
PIWIL3                0.017   piwi-like 3 
SLIT1                 0.017   slit homolog 1 
FIGF                  0.011   vascular endothelial growth factor D preproprotein [H...
TMEM51                0.011   transmembrane protein 51 
TMEM51                0.011   transmembrane protein 51 
TMEM51                0.011   transmembrane protein 51 
TMEM51                0.011   transmembrane protein 51 
EEFSEC                0.011   eukaryotic elongation factor, selenocysteine-tRNA-sp...
AZU1                  0.011   azurocidin 1 preproprotein 
BAT2                  0.011   HLA-B associated transcript-2 
PCNT                  0.011   pericentrin 
OAS1                  0.006   2',5'-oligoadenylate synthetase 1 isoform 2 
TTLL8                 0.006   tubulin tyrosine ligase-like family, member 8 [Homo...
KDM5C                 0.006   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5C                 0.006   jumonji, AT rich interactive domain 1C isoform 1 [H...
ACACB                 0.006   acetyl-Coenzyme A carboxylase beta 
LOC100289408          0.006   PREDICTED: hypothetical protein 
LOC100289408          0.006   PREDICTED: hypothetical protein XP_002344217 
POLR3GL               0.006   polymerase (RNA) III (DNA directed) polypeptide G (3...
CDH19                 0.006   cadherin 19, type 2 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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