Guide to the Human Genome
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Name: OAS1 Sequence: fasta or formatted (364aa) NCBI GI: 74229011
Description:

2',5'-oligoadenylate synthetase 1 isoform 2

Referenced in:

Interferon

Other entries for this name:
alt prot [400aa] 2',5'-oligoadenylate synthetase 1 isoform 1
alt prot [414aa] 2',5'-oligoadenylate synthetase 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         19           1
 C cysteine            2.7         10           1
 D aspartate           4.7         17           1
 E glutamate           5.8         21           2
 F phenylalanine       5.5         20           1
 G glycine             6.6         24           3
 H histidine           1.1          4           1
 I isoleucine          4.7         17           2
 K lysine              6.9         25           3
 L leucine            11.8         43           2
 M methionine          1.1          4           2
 N asparagine          3.3         12           1
 P proline             6.9         25           2
 Q glutamine           5.8         21           2
 R arginine            6.6         24           2
 S serine              5.5         20           2
 T threonine           4.9         18           2
 V valine              5.2         19           2
 W tryptophan          2.2          8           1
 Y tyrosine            3.6         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   2',5'-oligoadenylate synthetase 1 isoform 2 
OAS1                  0.951   2',5'-oligoadenylate synthetase 1 isoform 3 
OAS1                  0.949   2',5'-oligoadenylate synthetase 1 isoform 1 
OAS3                  0.498   2'-5'oligoadenylate synthetase 3 
OAS2                  0.471   2'-5'-oligoadenylate synthetase 2 isoform 2 
OAS2                  0.469   2'-5'-oligoadenylate synthetase 2 isoform 1 
OASL                  0.294   2'-5'-oligoadenylate synthetase-like isoform a [Homo...
OASL                  0.145   2'-5'-oligoadenylate synthetase-like isoform b [Homo...
OAS2                  0.066   2'-5'-oligoadenylate synthetase 2 isoform 3 
ILF2                  0.008   interleukin enhancer binding factor 2 
NLRP1                 0.005   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.005   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.005   NLR family, pyrin domain containing 1 isoform 3 [Hom...
NLRP1                 0.005   NLR family, pyrin domain containing 1 isoform 1 [Hom...
PMS1                  0.005   postmeiotic segregation 1 isoform c 
PMS1                  0.005   postmeiotic segregation 1 isoform b 
PMS1                  0.005   postmeiotic segregation 1 isoform a 
MATR3                 0.005   matrin 3 
MATR3                 0.005   matrin 3 
MLL5                  0.004   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.004   myeloid/lymphoid or mixed-lineage leukemia 5 
PPP2R3B               0.004   protein phosphatase 2, regulatory subunit B'', beta ...
PPP2R3B               0.004   protein phosphatase 2, regulatory subunit B'', beta ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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