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Search of human proteins with 239745400
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745400 PREDICTED: transmembrane protein 114 [Homo
sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens] 233 3e-62
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo... 233 3e-62
gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens] 233 3e-62
gi|226437592 transmembrane protein 114 [Homo sapiens] 233 3e-62
gi|93588657 claudin domain containing 1 protein isoform d [Homo ... 51 2e-07
gi|93588650 claudin domain containing 1 protein isoform a [Homo ... 51 2e-07
gi|93588620 claudin domain containing 1 protein isoform b [Homo ... 51 2e-07
gi|93588614 claudin domain containing 1 protein isoform a [Homo ... 51 2e-07
gi|93588624 claudin domain containing 1 protein isoform a [Homo ... 51 2e-07
gi|11096340 claudin domain containing 1 protein isoform a [Homo ... 51 2e-07
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 39 0.001
gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Ho... 38 0.002
gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Ho... 36 0.008
gi|5031949 natural killer cell group 7 sequence [Homo sapiens] 33 0.069
gi|169171558 PREDICTED: hypothetical protein [Homo sapiens] 32 0.090
gi|169171977 PREDICTED: hypothetical protein [Homo sapiens] 32 0.090
gi|169171016 PREDICTED: hypothetical protein [Homo sapiens] 32 0.090
gi|239509059 PREDICTED: hypothetical protein [Homo sapiens] 32 0.090
gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Ho... 32 0.12
gi|4503563 epithelial membrane protein 3 [Homo sapiens] 32 0.15
gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2 ... 31 0.26
gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1 [... 31 0.26
gi|4505907 peripheral myelin protein 22 [Homo sapiens] 30 0.34
gi|24430165 peripheral myelin protein 22 [Homo sapiens] 30 0.34
gi|24430163 peripheral myelin protein 22 [Homo sapiens] 30 0.34
gi|50345279 claudin 18 isoform 2 [Homo sapiens] 30 0.34
gi|7705961 claudin 18 isoform 1 [Homo sapiens] 30 0.45
gi|4503559 epithelial membrane protein 1 [Homo sapiens] 30 0.45
gi|169167239 PREDICTED: claudin-24-like [Homo sapiens] 30 0.58
gi|169166931 PREDICTED: claudin-24-like [Homo sapiens] 30 0.58
>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 233 bits (593), Expect = 3e-62
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS 60
MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS
Sbjct: 102 MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS 161
Query: 61 AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ 120
AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ
Sbjct: 162 AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ 221
Query: 121 AI 122
AI
Sbjct: 222 AI 223
>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
sapiens]
Length = 217
Score = 233 bits (593), Expect = 3e-62
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS 60
MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS
Sbjct: 96 MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS 155
Query: 61 AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ 120
AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ
Sbjct: 156 AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ 215
Query: 121 AI 122
AI
Sbjct: 216 AI 217
>gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 122
Score = 233 bits (593), Expect = 3e-62
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS 60
MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS
Sbjct: 1 MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS 60
Query: 61 AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ 120
AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ
Sbjct: 61 AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ 120
Query: 121 AI 122
AI
Sbjct: 121 AI 122
>gi|226437592 transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 233 bits (593), Expect = 3e-62
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS 60
MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS
Sbjct: 102 MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS 161
Query: 61 AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ 120
AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ
Sbjct: 162 AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ 221
Query: 121 AI 122
AI
Sbjct: 222 AI 223
>gi|93588657 claudin domain containing 1 protein isoform d [Homo
sapiens]
Length = 158
Score = 51.2 bits (121), Expect = 2e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 8 LLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFRE 66
LLP +SL LM FG + G + + ++ + TGIL L + TL +S Y+A
Sbjct: 47 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVA-------- 98
Query: 67 ALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 109
+ LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 99 GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 142
>gi|93588650 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 51.2 bits (121), Expect = 2e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 8 LLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFRE 66
LLP +SL LM FG + G + + ++ + TGIL L + TL +S Y+A
Sbjct: 142 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVA-------- 193
Query: 67 ALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 109
+ LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 194 GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 237
>gi|93588620 claudin domain containing 1 protein isoform b [Homo
sapiens]
Length = 276
Score = 51.2 bits (121), Expect = 2e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 8 LLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFRE 66
LLP +SL LM FG + G + + ++ + TGIL L + TL +S Y+A
Sbjct: 165 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVA-------- 216
Query: 67 ALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 109
+ LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 217 GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 260
>gi|93588614 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 51.2 bits (121), Expect = 2e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 8 LLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFRE 66
LLP +SL LM FG + G + + ++ + TGIL L + TL +S Y+A
Sbjct: 142 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVA-------- 193
Query: 67 ALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 109
+ LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 194 GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 237
>gi|93588624 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 51.2 bits (121), Expect = 2e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 8 LLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFRE 66
LLP +SL LM FG + G + + ++ + TGIL L + TL +S Y+A
Sbjct: 142 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVA-------- 193
Query: 67 ALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 109
+ LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 194 GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 237
>gi|11096340 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 51.2 bits (121), Expect = 2e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 8 LLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFRE 66
LLP +SL LM FG + G + + ++ + TGIL L + TL +S Y+A
Sbjct: 142 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVA-------- 193
Query: 67 ALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 109
+ LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 194 GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 237
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 38.5 bits (88), Expect = 0.001
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 11 LSLILMVFGGMTGFLSFLLQAYLLLLL-TGILFLFGAMVTLAGISVYIAYSAAAFREALC 69
LS IL++ GG+ S + ++ ++L GILF+ + + G+ VYI SA A
Sbjct: 134 LSAILLLLGGVCVAASRVYKSKRNIILGAGILFVAAGLSNIIGVIVYI--SANAGEPGPK 191
Query: 70 LLEEKALLDQVDISFGWSLALGWISFIAELLTGA----AFLAAARELSLRRRQD 119
EEK + S+GWS G +SFI + G ++ +RE + R D
Sbjct: 192 RDEEK----KNHYSYGWSFYFGGLSFILAEVIGVLAVNIYIERSREAHCQSRSD 241
>gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Homo
sapiens]
Length = 323
Score = 38.1 bits (87), Expect = 0.002
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 11 LSLILMVFGGMTGFLS-FLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALC 69
LS+IL+ GG+ S F + ++L GI F+ + + GI VYI+ +A
Sbjct: 110 LSVILLFMGGLCIAASEFYKTRHNIILSAGIFFVSAGLSNIIGIIVYISANAGD------ 163
Query: 70 LLEEKALLDQVDISFGWSLALGWISFIAELLTG 102
K+ + S+GWS G +SFI + G
Sbjct: 164 --PSKSDSKKNSYSYGWSFYFGALSFIIAEMVG 194
>gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Homo
sapiens]
Length = 315
Score = 35.8 bits (81), Expect = 0.008
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 11 LSLILMVFGGMTGFLS-FLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALC 69
LS+ L+ FGG+ S F + ++L GI F+ + + GI VYI+ +A
Sbjct: 110 LSVTLLFFGGLCVAASEFHRSRHNVILSAGIFFVSAGLSNIIGIIVYISANAG------- 162
Query: 70 LLEEKALLDQVDISFGWSLALGWISFIAELLTG 102
+ + S+GWS G SFI + G
Sbjct: 163 --DPGQRDSKKSYSYGWSFYFGAFSFIIAEIVG 193
>gi|5031949 natural killer cell group 7 sequence [Homo sapiens]
Length = 165
Score = 32.7 bits (73), Expect = 0.069
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 79 QVDISFGWSLALGWISFIAELLTGAAFLAA 108
Q+ F WS LGW+S I L TGA L A
Sbjct: 124 QIQTFFSWSFYLGWVSAILLLCTGALSLGA 153
>gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 32.3 bits (72), Expect = 0.090
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 11 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 70
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 186 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 243
Query: 71 LEEKALLDQVDISFGWSLALGWISFIAELLTG 102
L D + +GWS+ W L++G
Sbjct: 244 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 275
>gi|169171977 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 32.3 bits (72), Expect = 0.090
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 11 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 70
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 135
Query: 71 LEEKALLDQVDISFGWSLALGWISFIAELLTG 102
L D + +GWS+ W L++G
Sbjct: 136 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 167
>gi|169171016 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 32.3 bits (72), Expect = 0.090
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 11 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 70
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 135
Query: 71 LEEKALLDQVDISFGWSLALGWISFIAELLTG 102
L D + +GWS+ W L++G
Sbjct: 136 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 167
>gi|239509059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 32.3 bits (72), Expect = 0.090
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 11 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 70
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 135
Query: 71 LEEKALLDQVDISFGWSLALGWISFIAELLTG 102
L D + +GWS+ W L++G
Sbjct: 136 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 167
>gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Homo
sapiens]
Length = 327
Score = 32.0 bits (71), Expect = 0.12
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 11 LSLILMVFGGMT-GFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALC 69
LS IL++ GG+ G + ++L GILF+ + + GI VYI+ + +
Sbjct: 113 LSTILLLLGGLCIGAGRIYSRKNNIVLSAGILFVAAGLSNIIGIIVYISSNTGDPSDKRD 172
Query: 70 LLEEKALLDQVDISFGWSLALGWISFIAELLTGA----AFLAAARELSLRRRQD 119
E+K + ++GWS G +SFI G ++ +EL + +++
Sbjct: 173 --EDK----KNHYNYGWSFYFGALSFIVAETVGVLAVNIYIEKNKELRFKTKRE 220
>gi|4503563 epithelial membrane protein 3 [Homo sapiens]
Length = 163
Score = 31.6 bits (70), Expect = 0.15
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 7 ILLPLSLILMVFGGMTGFLSFLLQAYL-----LLLLTGILFLFGAMVTLAGISVYIAYSA 61
+L+ LSLIL F+ F+ Q Y L TG+ L ++ G +Y ++
Sbjct: 68 VLMVLSLILCCLS----FILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHA- 122
Query: 62 AAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFL 106
EE SFG+ AL W++F L++G ++
Sbjct: 123 ----------EEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYI 157
>gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2
[Homo sapiens]
Length = 173
Score = 30.8 bits (68), Expect = 0.26
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 11 LSLILMVFGGMTGFLSFLLQAYLLLLL----TGILFLFGAMVTLAGISVYIAYSAAAFRE 66
LS + + G + G ++F Q + GI+F + + +++Y + +
Sbjct: 70 LSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGR 129
Query: 67 ALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRR 116
D F WS LGW++ + G ++ A R RR
Sbjct: 130 RFG-----------DWRFSWSYILGWVAVLMTFFAGIFYMCAYRVHECRR 168
>gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1
[Homo sapiens]
Length = 215
Score = 30.8 bits (68), Expect = 0.26
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 11 LSLILMVFGGMTGFLSFLLQAYLLLLL----TGILFLFGAMVTLAGISVYIAYSAAAFRE 66
LS + + G + G ++F Q + GI+F + + +++Y + +
Sbjct: 112 LSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGR 171
Query: 67 ALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRR 116
D F WS LGW++ + G ++ A R RR
Sbjct: 172 RFG-----------DWRFSWSYILGWVAVLMTFFAGIFYMCAYRVHECRR 210
>gi|4505907 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 30.4 bits (67), Expect = 0.34
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 12 SLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLL 71
++IL + + F Q + L G ++ G LAG+ V A + R L
Sbjct: 68 TMILSIIFSILSLFLFFCQLFTLTK-GGRFYITGIFQILAGLCVMSAAAIYTVRHPEWHL 126
Query: 72 EEKALLDQVDISFGWSLALGWISFIAELLTGAAFL 106
D S+G++ L W++F LL+G ++
Sbjct: 127 NS-------DYSYGFAYILAWVAFPLALLSGVIYV 154
>gi|24430165 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 30.4 bits (67), Expect = 0.34
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 12 SLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLL 71
++IL + + F Q + L G ++ G LAG+ V A + R L
Sbjct: 68 TMILSIIFSILSLFLFFCQLFTLTK-GGRFYITGIFQILAGLCVMSAAAIYTVRHPEWHL 126
Query: 72 EEKALLDQVDISFGWSLALGWISFIAELLTGAAFL 106
D S+G++ L W++F LL+G ++
Sbjct: 127 NS-------DYSYGFAYILAWVAFPLALLSGVIYV 154
>gi|24430163 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 30.4 bits (67), Expect = 0.34
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 12 SLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLL 71
++IL + + F Q + L G ++ G LAG+ V A + R L
Sbjct: 68 TMILSIIFSILSLFLFFCQLFTLTK-GGRFYITGIFQILAGLCVMSAAAIYTVRHPEWHL 126
Query: 72 EEKALLDQVDISFGWSLALGWISFIAELLTGAAFL 106
D S+G++ L W++F LL+G ++
Sbjct: 127 NS-------DYSYGFAYILAWVAFPLALLSGVIYV 154
>gi|50345279 claudin 18 isoform 2 [Homo sapiens]
Length = 261
Score = 30.4 bits (67), Expect = 0.34
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 25/145 (17%)
Query: 3 GTFVIL-LPLSL----ILMVFGGMTGFLSFLLQAYLL----------------LLLTGIL 41
G F +L LP L LM+ G + G + L+ + L L +GI+
Sbjct: 65 GYFTLLGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGIM 124
Query: 42 FLFGAMVTLAGISVYIAYSAAAFREALCLLEE----KALLDQVDISFGWSLALGWISFIA 97
F+ + +AG+SV+ F + + Q +FG +L +GW++
Sbjct: 125 FIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGWVAGGL 184
Query: 98 ELLTGAAFLAAARELSLRRRQDQAI 122
L+ G A R L+ +A+
Sbjct: 185 TLIGGVMMCIACRGLAPEETNYKAV 209
>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
Length = 261
Score = 30.0 bits (66), Expect = 0.45
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 34 LLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEE----KALLDQVDISFGWSLA 89
+ L +GI+F+ + +AG+SV+ F + + Q +FG +L
Sbjct: 117 MTLTSGIMFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALF 176
Query: 90 LGWISFIAELLTGAAFLAAARELSLRRRQDQAI 122
+GW++ L+ G A R L+ +A+
Sbjct: 177 VGWVAGGLTLIGGVMMCIACRGLAPEETNYKAV 209
>gi|4503559 epithelial membrane protein 1 [Homo sapiens]
Length = 157
Score = 30.0 bits (66), Expect = 0.45
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 13 LILMVFGGMTGFLSFLLQAYLL-----LLLTGILFLFGAMVTLAGISVYIAYSAAAFREA 67
+IL + + L F+ Q + + L+G L + L G+S+Y ++ A
Sbjct: 68 MILSIIFCVIALLVFVFQLFTMEKGNRFFLSGATTLVCWLCILVGVSIYTSHYANR---- 123
Query: 68 LCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARE 111
D G+S LGWI F + G +L ++
Sbjct: 124 ----------DGTQYHHGYSYILGWICFCFSFIIGVLYLVLRKK 157
>gi|169167239 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 29.6 bits (65), Expect = 0.58
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 9 LPLSLILMVFGGMTGFLSFLLQAYLLLLLT----------GILFLFGAMVTLAGISVYIA 58
L +S ILM GFL L+ + L L +L L G + +GI+ +
Sbjct: 77 LRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILSWASGITALVP 136
Query: 59 YSAAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 109
S A + +E FG +L LGW + ++ LL G AA
Sbjct: 137 VSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLNCAA 187
>gi|169166931 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 29.6 bits (65), Expect = 0.58
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 9 LPLSLILMVFGGMTGFLSFLLQAYLLLLLT----------GILFLFGAMVTLAGISVYIA 58
L +S ILM GFL L+ + L L +L L G + +GI+ +
Sbjct: 77 LRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGILSWASGITALVP 136
Query: 59 YSAAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 109
S A + +E FG +L LGW + ++ LL G AA
Sbjct: 137 VSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLNCAA 187
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.333 0.145 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,383,155
Number of Sequences: 37866
Number of extensions: 106742
Number of successful extensions: 647
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 65
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.