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Search of human proteins with 239745009
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745009 PREDICTED: hypothetical protein XP_002343330 [Homo
sapiens]
(283 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745009 PREDICTED: hypothetical protein XP_002343330 [Homo ... 596 e-171
gi|239756142 PREDICTED: hypothetical protein XP_002344837 [Homo ... 227 1e-59
gi|239750701 PREDICTED: hypothetical protein [Homo sapiens] 227 1e-59
gi|54792146 tripartite motif-containing 47 [Homo sapiens] 34 0.13
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 34 0.17
gi|154426272 hypothetical protein LOC54540 [Homo sapiens] 32 0.82
gi|50345997 E1A binding protein p300 [Homo sapiens] 31 1.1
gi|23238226 CDC42 effector protein 1 [Homo sapiens] 31 1.1
gi|19111150 angiomotin isoform 2 [Homo sapiens] 31 1.4
gi|166064029 angiomotin isoform 1 [Homo sapiens] 31 1.4
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 31 1.4
gi|166795280 forkhead box N4 [Homo sapiens] 31 1.4
gi|18079216 CASK interacting protein 1 [Homo sapiens] 30 1.8
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 30 1.8
gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo sap... 30 1.8
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 30 1.8
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 30 1.8
gi|24308334 family with sequence similarity 120B [Homo sapiens] 30 1.8
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 30 1.8
gi|134031945 SCO-spondin [Homo sapiens] 30 1.8
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 30 1.8
gi|55741473 HECT, C2 and WW domain containing E3 ubiquitin prote... 30 1.8
gi|222831592 transmembrane protease, serine 7 [Homo sapiens] 30 2.4
gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens] 30 2.4
gi|169211906 PREDICTED: hypothetical protein [Homo sapiens] 30 2.4
gi|169211049 PREDICTED: hypothetical protein [Homo sapiens] 30 2.4
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap... 30 2.4
gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens] 30 2.4
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 30 3.1
gi|169204993 PREDICTED: hypothetical protein LOC100130711 [Homo ... 30 3.1
>gi|239745009 PREDICTED: hypothetical protein XP_002343330 [Homo
sapiens]
Length = 283
Score = 596 bits (1537), Expect = e-171
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK 60
MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK
Sbjct: 1 MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK 60
Query: 61 PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSMCTDRPARDVPAVHG 120
PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSMCTDRPARDVPAVHG
Sbjct: 61 PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSMCTDRPARDVPAVHG 120
Query: 121 KAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCTTQDCPARDVPAVHGKAPAPHRTV 180
KAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCTTQDCPARDVPAVHGKAPAPHRTV
Sbjct: 121 KAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCTTQDCPARDVPAVHGKAPAPHRTV 180
Query: 181 QPVMCLQCTGKPLHHTGLSSPRNEYCSAIAAGGQLEGVTVQGWQAILPLSSAVVIILPIS 240
QPVMCLQCTGKPLHHTGLSSPRNEYCSAIAAGGQLEGVTVQGWQAILPLSSAVVIILPIS
Sbjct: 181 QPVMCLQCTGKPLHHTGLSSPRNEYCSAIAAGGQLEGVTVQGWQAILPLSSAVVIILPIS 240
Query: 241 ETPVHSAPGFGKNLHSKQVIKENLKPCKELFPQVQTGSHGDAP 283
ETPVHSAPGFGKNLHSKQVIKENLKPCKELFPQVQTGSHGDAP
Sbjct: 241 ETPVHSAPGFGKNLHSKQVIKENLKPCKELFPQVQTGSHGDAP 283
>gi|239756142 PREDICTED: hypothetical protein XP_002344837 [Homo
sapiens]
Length = 208
Score = 227 bits (578), Expect = 1e-59
Identities = 132/217 (60%), Positives = 142/217 (65%), Gaps = 26/217 (11%)
Query: 1 MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK 60
MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK
Sbjct: 1 MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK 60
Query: 61 PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSM----CTDRPARDVP 116
PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSM T P
Sbjct: 61 PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSMWVTPSTGGSILLKP 120
Query: 117 AV--HGKAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCTTQDCPARDVPAVHGKAP 174
++ H A AP P + T HA P+R C + P+V+G
Sbjct: 121 SMKGHPSAIAPSVNGHP---SEITPSMNGHASELKPSRNG------CSSEITPSVNGH-- 169
Query: 175 APHRTVQPVMCLQCTGKPLHHTGLSSPRNEYCSAIAA 211
P QPV H + ++ N Y S I A
Sbjct: 170 -PSEITQPVNG--------HPSEITLTMNGYLSKITA 197
>gi|239750701 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 227 bits (578), Expect = 1e-59
Identities = 132/217 (60%), Positives = 142/217 (65%), Gaps = 26/217 (11%)
Query: 1 MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK 60
MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK
Sbjct: 1 MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK 60
Query: 61 PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSM----CTDRPARDVP 116
PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSM T P
Sbjct: 61 PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSMWVTPSTGGSILLKP 120
Query: 117 AV--HGKAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCTTQDCPARDVPAVHGKAP 174
++ H A AP P + T HA P+R C + P+V+G
Sbjct: 121 SMKGHPSAIAPSVNGHP---SEITPSMNGHASELKPSRNG------CSSEITPSVNGH-- 169
Query: 175 APHRTVQPVMCLQCTGKPLHHTGLSSPRNEYCSAIAA 211
P QPV H + ++ N Y S I A
Sbjct: 170 -PSEITQPVNG--------HPSEITLTMNGYLSKITA 197
>gi|54792146 tripartite motif-containing 47 [Homo sapiens]
Length = 638
Score = 34.3 bits (77), Expect = 0.13
Identities = 45/171 (26%), Positives = 56/171 (32%), Gaps = 28/171 (16%)
Query: 47 GRSARGGRQKTPFKPQFLPP-------HWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGP 99
G GG + P + P H L +L + +G+G G G L P
Sbjct: 44 GAGGPGGAARCPLCQEPFPDGLQLRKNHTLSELLQLRQGSG------PGSGPGPAPALAP 97
Query: 100 AVLDPSMCTDRPARDVPAVHGKAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARES--PCT 157
PS P P PA +PV C C G + PA S C
Sbjct: 98 EPSAPSALPSVPEPSAPCAPEPWPAGE---EPVRCDACP------EGAALPAALSCLSCL 148
Query: 158 TQDCPARDVPAVHGKAPAPHRTVQPVMCLQCTGKPLHHTGLSSPRNEYCSA 208
CPA P A HR V P+ L+ + P H P YC A
Sbjct: 149 ASFCPAHLGPHERSPALRGHRLVPPLRRLEESLCPRH----LRPLERYCRA 195
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 33.9 bits (76), Expect = 0.17
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 28/235 (11%)
Query: 59 FKPQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSMCTDRPARDVPAV 118
++P + P W+ L + AG + SQS G G + + C+ R + D +
Sbjct: 1623 YRPSSMEP-WMEPLSPFEDVAGTEM-SQSDSGVDLS---GDSQVSSGPCSQRSSPD-GGL 1676
Query: 119 HGKAPAPRRTV---QPVMCLQCTGKPLHHAGPSSPARESPCTTQDCPARDVPAVHGKAPA 175
G A P + P+ + C G P S P R P D +++P P
Sbjct: 1677 KGAAEGPPKRPGGSSPLNAVPCEGPP-----GSEPPRRPPPAPHDGDRKELPREQPLPPG 1731
Query: 176 PHRTVQPVMCLQCTG----KPLHHTGLSSPRNEYCSAIAAGGQLEGVTVQGWQAILPLSS 231
P T + + T +P H G P ++ ++ L V +A L++
Sbjct: 1732 PIGTERSQRTDRGTEPGPIRPSHRPG---PPVQFGTS-DKDSDLRLVVGDSLKAEKELTA 1787
Query: 232 AVVIILPISE------TPVHSAPGFGKNLHSKQVIKENLKPCKELFPQVQTGSHG 280
+V +P+S + SA KNL S + E + L+P+V GS G
Sbjct: 1788 SVTEAIPVSRDWELLPSAAASAEPQSKNLDSGHCVPEPSSSGQRLYPEVFYGSAG 1842
>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
Length = 789
Score = 31.6 bits (70), Expect = 0.82
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 139 GKPLH-HAGPSSPARESPCTTQDCPARDVPAVHGKAPAPHRTVQPVMCLQCTGKPLHHTG 197
G P H H P++PA P +CP A H P + P + P +G
Sbjct: 157 GSPPHPHLLPTTPAAPFPAQASECPVAAATAPHTPGPCQSSHL-PSTSMPLLKMPPPFSG 215
Query: 198 LSSPRNEYCSAIAAG 212
S P + +C +G
Sbjct: 216 CSHPCSGHCGGHCSG 230
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 31.2 bits (69), Expect = 1.1
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 19/80 (23%)
Query: 111 PARDVPAVHGKAPAP--RRTVQPVMCLQCTGKPLHHAGPSSPARESPCTTQDCPARDVPA 168
P PA+H +P+P RT P HH PS A++ P TT P PA
Sbjct: 820 PQLPQPALHQNSPSPVPSRTPTP-----------HHTPPSIGAQQPPATTIPAPVPTPPA 868
Query: 169 V------HGKAPAPHRTVQP 182
+ P P +T P
Sbjct: 869 MPPGPQSQALHPPPRQTPTP 888
>gi|23238226 CDC42 effector protein 1 [Homo sapiens]
Length = 391
Score = 31.2 bits (69), Expect = 1.1
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 25/83 (30%)
Query: 97 LGPAVLDPSM----CTDRPARDVPAVHGKAPAPRRTVQPVMCLQCTGKPLHHAGPSSPAR 152
LGP++L + + PA + PA PAP A P+ PA
Sbjct: 202 LGPSLLSELLGVMSLPEAPAAETPAPAANPPAPT------------------ANPTGPAA 243
Query: 153 ESPCTTQDCPARDVPAVHGKAPA 175
P TT + PA PA + APA
Sbjct: 244 NPPATTANPPA---PAANPSAPA 263
>gi|19111150 angiomotin isoform 2 [Homo sapiens]
Length = 675
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/105 (27%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 100 AVLDPSMCTDRPARDVPAVHGKAPAPRRTVQPVMCLQCTGKPLHHAGPSS-PA---RESP 155
A + PS + PA PAP P P P+S PA +P
Sbjct: 548 AAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAPTPAP 607
Query: 156 CTTQDCPARDVPAVHGKAPAPHRTVQPVMCLQC----TGKPLHHT 196
T +VPA P PHR P L C T P+ H+
Sbjct: 608 TPTPAVAQAEVPASPATGPGPHRLSIP--SLTCNPDKTDGPVFHS 650
>gi|166064029 angiomotin isoform 1 [Homo sapiens]
Length = 1084
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/105 (27%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 100 AVLDPSMCTDRPARDVPAVHGKAPAPRRTVQPVMCLQCTGKPLHHAGPSS-PA---RESP 155
A + PS + PA PAP P P P+S PA +P
Sbjct: 957 AAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAPTPAP 1016
Query: 156 CTTQDCPARDVPAVHGKAPAPHRTVQPVMCLQC----TGKPLHHT 196
T +VPA P PHR P L C T P+ H+
Sbjct: 1017 TPTPAVAQAEVPASPATGPGPHRLSIP--SLTCNPDKTDGPVFHS 1059
>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
sapiens]
Length = 847
Score = 30.8 bits (68), Expect = 1.4
Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 21/119 (17%)
Query: 104 PSMCTDRPARDVPAVHGKAPAPRRTVQPVMC--------------LQCTGKPLHHAG--P 147
PS+ + P R VPA G + + +Q + LQ G P G P
Sbjct: 616 PSLEPEEPKRPVPAERGSSSGTPKLIQRALLRGTALLASLGLGRDLQPPGGPGRERGESP 675
Query: 148 SSP--ARESPCTTQDCPARDVPAVHGKAPAPHRTVQPVMCLQCTGKPLHHTGLSSPRNE 204
++P +PC T+ P+ P + P P L G P+ SPR E
Sbjct: 676 TTPPTPTPAPCPTEPPPS---PLICFSLKTPDSPPTPAPLLLDLGIPVGQRSAKSPRRE 731
>gi|166795280 forkhead box N4 [Homo sapiens]
Length = 517
Score = 30.8 bits (68), Expect = 1.4
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 112 ARDVPAVHGKAPAPRRTVQPVMCLQCTGKPLHH--AGPSSPARESPCTTQDCPARDVPAV 169
A V HG + QP+M L PLHH + A +SP Q P +P +
Sbjct: 331 ATTVAVAHGCLAVSQLPPQPLMTLSLQSVPLHHQVQPQAHLAPDSPAPAQTPPLHALPDL 390
Query: 170 HGKAPAPH 177
+P PH
Sbjct: 391 -SPSPLPH 397
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 30.4 bits (67), Expect = 1.8
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 119 HGKAPAPRRTVQPVMCLQCTGKPLHHAG-PSSPARESPCTTQDCPARDV--PAVHGKAPA 175
HG APA + L T +P+ P SP P PA G AP
Sbjct: 795 HGPAPATAKVKPTPQLLPPTERPMSPRSLPQSPTHRGFAYVLPQPVEGEVGPAAPGPAPP 854
Query: 176 PHRTVQPVMCL 186
P T P +CL
Sbjct: 855 PVPTAVPTLCL 865
Score = 28.1 bits (61), Expect = 9.1
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 16/74 (21%)
Query: 116 PAVHGKAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESP-----CTTQDCPARD---VP 167
PA G AP P T P +CL P A P P + + + P RD VP
Sbjct: 846 PAAPGPAPPPVPTAVPTLCL----PPEADAEPGRPKKRAHSLNRYAASDSEPERDELLVP 901
Query: 168 AVHGKAPAPHRTVQ 181
A G P+ TVQ
Sbjct: 902 AAAG----PYATVQ 911
Score = 28.1 bits (61), Expect = 9.1
Identities = 18/62 (29%), Positives = 22/62 (35%)
Query: 111 PARDVPAVHGKAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCTTQDCPARDVPAVH 170
P+ PA+H A PR P A P AR+ T C A + AV
Sbjct: 1329 PSPGAPALHVPAKPPRAAAAAAAAAAAPPAPPEGASPGDSARQKLEETSACLAAALQAVE 1388
Query: 171 GK 172
K
Sbjct: 1389 EK 1390
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 30.4 bits (67), Expect = 1.8
Identities = 31/101 (30%), Positives = 38/101 (37%), Gaps = 26/101 (25%)
Query: 111 PARDV-PAVHGKAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCTTQDCPARDVPAV 169
PAR P + PAP R PV P A PS PA P PA+
Sbjct: 35 PARSPRPPLCAPRPAPGRAQSPV--------PAAGAVPSPPAAAHPAR---------PAL 77
Query: 170 HGKAPAPHR--------TVQPVMCLQCTGKPLHHTGLSSPR 202
G+ PAP R VQP + + +PL G+ R
Sbjct: 78 RGETPAPGRRGRATTRGEVQPSVRPPLSHRPLRGGGMGRGR 118
>gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo
sapiens]
Length = 487
Score = 30.4 bits (67), Expect = 1.8
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 35/154 (22%)
Query: 105 SMCTDRPARDVPAVHGKAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCTTQDCPAR 164
S C RPA + + P P T+ P + L C+G+ + G RE+ A
Sbjct: 289 SSCVTRPAGPLHTAWSRCPQPWTTLGPSV-LACSGRSMSEQG-----RETEEEEGGGGAS 342
Query: 165 DVPAVHGKAPAPHRTVQPVMCLQCTGKPLHHTGLSSPRNEYCSAIAAGGQLEGVTVQGWQ 224
D + + P H+ + C +G PL G L G+ +
Sbjct: 343 DTAPMLPRGPPDHQ-ASALTCPGWSGPPL----------------LPGRLLAGLLL---H 382
Query: 225 AILPLSSAVVIILP---------ISETPVHSAPG 249
+LP ++ ++++LP + + VH APG
Sbjct: 383 LLLPAAAFLLVLLPAAAVVYLGFLCHSRVHPAPG 416
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 30.4 bits (67), Expect = 1.8
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 116 PAVHGKAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCTTQDCPARDVPAVHGKAPA 175
P+ G PR Q + L + PL G S P P P RD P G P
Sbjct: 323 PSSSGNDETPRLP-QRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPP 381
Query: 176 P---HRTVQPVMCLQCTGKPLHHTGLSSPRN 203
P R L T + +G+ SPR+
Sbjct: 382 PPPVSRNGSTSRALPATPQLPSRSGVDSPRS 412
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 30.4 bits (67), Expect = 1.8
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 116 PAVHGKAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCTTQDCPARDVPAVHGKAPA 175
P+ G PR Q + L + PL G S P P P RD P G P
Sbjct: 323 PSSSGNDETPRLP-QRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPP 381
Query: 176 P---HRTVQPVMCLQCTGKPLHHTGLSSPRN 203
P R L T + +G+ SPR+
Sbjct: 382 PPPVSRNGSTSRALPATPQLPSRSGVDSPRS 412
>gi|24308334 family with sequence similarity 120B [Homo sapiens]
Length = 910
Score = 30.4 bits (67), Expect = 1.8
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 18/83 (21%)
Query: 106 MCTD-RPARDVPAVHGKAPAPRRTVQPVMCLQ---------CTGKPLHHAGP----SSPA 151
MC+D P ++VP G P RR V MC CTG P S P
Sbjct: 379 MCSDPEPRQEVPTCTG--PESRREVP--MCSDPEPRQEVPMCTGPEARQEVPMYTDSEPR 434
Query: 152 RESPCTTQDCPARDVPAVHGKAP 174
+E P T P ++VP G P
Sbjct: 435 QEVPMYTDSEPRQEVPMYTGSEP 457
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 30.4 bits (67), Expect = 1.8
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 125 PRRTVQPVMCLQC----TGKPLHHAGPSSPARESPCTTQ----DCPARDVPAVHGKAPAP 176
P RT+ PVM + T L H+ P S + PCT + CP P + A
Sbjct: 6 PLRTLGPVMYGKLPRLETDSGLEHSLPHSVGNQDPCTYKGSYFSCPMAGTPKAESEQLAS 65
Query: 177 HRTVQPVMCLQCTGKPLHHTGL 198
P+ G PL L
Sbjct: 66 WTPYPPLYSTGMAGPPLQADNL 87
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 30.4 bits (67), Expect = 1.8
Identities = 30/116 (25%), Positives = 36/116 (31%), Gaps = 24/116 (20%)
Query: 48 RSARGGRQKTPFKPQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCW-LGPAVLDPSM 106
R+ GG P + Q C+L+ E Q S A C CW L P ++
Sbjct: 4788 RTCEGGPGVAPCQAQDTEQRQECNLQPCPECPPGQVLSACATSCPCLCWHLQPG----AI 4843
Query: 107 CTDRPARDVPAVHGKAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCTTQDCP 162
C P QP C G L H G P PCT P
Sbjct: 4844 CVQEPC-----------------QP--GCGCPGGQLLHNGTCVPPTACPCTQHSLP 4880
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 30.4 bits (67), Expect = 1.8
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 120 GKAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCTTQDCPARDVPAVHGKA-----P 174
G P P RT P C+ + L G S ARE+ TQD A P G P
Sbjct: 1092 GAQPEPTRTFLPGEPPPCSPRSLEEPGLLSGAREA---TQDLAATPYPTERGPQGKAADP 1148
Query: 175 APHRTVQPVMC 185
+P +Q + C
Sbjct: 1149 SPLEGLQELQC 1159
Score = 28.5 bits (62), Expect = 7.0
Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 99 PAVLDPSMCTDRPARDVPAVHGK-APAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCT 157
PA T +P P G +PA T P C KP + P +PCT
Sbjct: 958 PAQEKAPKSTHKPVALTPTAPGAPSPAAGPTKLPPCCHPPDPKPPASSPTPPPRPSAPCT 1017
Query: 158 TQDCPA 163
CPA
Sbjct: 1018 LNVCPA 1023
>gi|55741473 HECT, C2 and WW domain containing E3 ubiquitin protein
ligase 2 [Homo sapiens]
Length = 1572
Score = 30.4 bits (67), Expect = 1.8
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 137 CTGKPLHHAGPSSPARESPCTTQDCPARDVPAVHGKAPAPHRTVQPVMCLQCTGKPLHHT 196
C +P +GP+ ++ES CT P VP+ + P P + G+
Sbjct: 684 CAAEPTS-SGPAEGSQESVCTAGSLPVVQVPSGEDEGPGAESATVPDQ--EELGEVWQRR 740
Query: 197 G--------LSSPRNEYCSAIAAGGQLEGVTVQ 221
G SP E SA A G EG T Q
Sbjct: 741 GSLEGAAAAAESPPQEEGSAGEAQGTCEGATAQ 773
>gi|222831592 transmembrane protease, serine 7 [Homo sapiens]
Length = 717
Score = 30.0 bits (66), Expect = 2.4
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 9 LVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFKPQFLPPHW 68
LV + + R SGI Y + +P QK + V V + G G+ +P+ P + PP
Sbjct: 213 LVTFKSPHIRRLSGIRAYFEVIPEQK-CENTVLVKDITGFE---GKISSPYYPSYYPPKC 268
Query: 69 LCDLEHITE----GAGLQCYSQS 87
C + T G L+ Y+ S
Sbjct: 269 KCTWKFQTSLSTLGIALKFYNYS 291
>gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]
Length = 2089
Score = 30.0 bits (66), Expect = 2.4
Identities = 41/172 (23%), Positives = 60/172 (34%), Gaps = 30/172 (17%)
Query: 102 LDPSMCTDRPARDVP---AVHGKA-----PAPRRTVQPVMCLQCTGKPLHHAGPSSPARE 153
L PS TD+P P A G+ P V LQ + P +R
Sbjct: 1537 LQPSTSTDQPVTPEPTSRATRGRTNRSSVKTPESIVPIAPELQPSTSRNQLVTPEPTSRA 1596
Query: 154 SPCTTQDCPARDVPAVHGKAPAPHRT------VQPVMCLQCTGKPLHHTGLSSPRNEYCS 207
+ C T + V AP PH T V P + + T + + + + +P+
Sbjct: 1597 TRCRTNRSSVKTPEPVVPTAPEPHPTTSTDQPVTPKLTSRATRRKTNRSSVKTPK----P 1652
Query: 208 AIAAGGQLEGVT-----------VQGWQAILPLSSAVVIILPISETPVHSAP 248
A LE T QG Q+ L S+ V +P+ TP +P
Sbjct: 1653 VEPAASDLEPFTPTDQSVTPEAIAQGGQS-KTLRSSTVRAMPVPTTPEFQSP 1703
>gi|169211906 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 30.0 bits (66), Expect = 2.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 140 KPLHHAGPSSPARESPCTTQDC--PARDVPAVHGKAPAPHRTVQP 182
+P H P+ P R P ++C PA +PA HG P P R +QP
Sbjct: 105 RPARHR-PTWPRRAEPQVPEECSLPAGVLPAQHGPEPRP-RGLQP 147
>gi|169211049 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 30.0 bits (66), Expect = 2.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 140 KPLHHAGPSSPARESPCTTQDC--PARDVPAVHGKAPAPHRTVQP 182
+P H P+ P R P ++C PA +PA HG P P R +QP
Sbjct: 105 RPARHR-PTWPRRAEPQVPEECSLPAGVLPAQHGPEPRP-RGLQP 147
>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
sapiens]
Length = 254
Score = 30.0 bits (66), Expect = 2.4
Identities = 30/92 (32%), Positives = 35/92 (38%), Gaps = 17/92 (18%)
Query: 79 AGLQCYSQSAVGSGCFCWLGPAVLDPS---MCTDRPARDVPAVHGKAPAPRRTVQP---- 131
A L S +AV C PA PS +C P PA A A V P
Sbjct: 109 ATLGAASPAAVAPAAVC---PAAASPSAASLCAASPTAAAPAAASPAAAAPLAVNPAAAA 165
Query: 132 --VMCLQCTGK----PLHHAGP-SSPARESPC 156
C+Q + PL A P SSPA +PC
Sbjct: 166 PAAACVQSVAESPATPLAIAQPVSSPAAPAPC 197
>gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens]
Length = 825
Score = 30.0 bits (66), Expect = 2.4
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 99 PAVLDPSMCTDRPARDVPAVHGKAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCTT 158
PA + P + PA P +APA VQP + P P PA E+P
Sbjct: 619 PAEVQPPPAEEAPAEVQPPPAEEAPAE---VQPPPAEEA---PAEVQPP--PAEEAPAEV 670
Query: 159 QDCPARDVPAVHGKAPAPHRTVQPVM 184
Q PA + PA PA ++ +
Sbjct: 671 QPPPAEEAPAEVQSLPAEETPIEETL 696
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 29.6 bits (65), Expect = 3.1
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 20/76 (26%)
Query: 115 VPAVHGKAPA-------PRRTVQPVMCLQCTG---KPLHHA------GPSSPARESPCTT 158
VP V G AP P PV+ G + LHH GP SPAR +PC+
Sbjct: 665 VPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTAPCS- 723
Query: 159 QDCPARDVPAVHGKAP 174
PA P G AP
Sbjct: 724 ---PALTPPPEKGPAP 736
>gi|169204993 PREDICTED: hypothetical protein LOC100130711 [Homo
sapiens]
Length = 168
Score = 29.6 bits (65), Expect = 3.1
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 141 PLH-HAGPSSPARESPCTTQDCPARDVPAVHGKAPAPHRTVQPVMCLQCTGKPLHHTGLS 199
P H H P A P QD P PA APAP + P C+ PLH T L
Sbjct: 55 PAHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPA-GQPCS--PLHSTLLP 111
Query: 200 SP 201
P
Sbjct: 112 RP 113
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,459,864
Number of Sequences: 37866
Number of extensions: 758784
Number of successful extensions: 2261
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 2167
Number of HSP's gapped (non-prelim): 162
length of query: 283
length of database: 18,247,518
effective HSP length: 101
effective length of query: 182
effective length of database: 14,423,052
effective search space: 2624995464
effective search space used: 2624995464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.