Guide to the Human Genome
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Name: FAM120B Sequence: fasta or formatted (910aa) NCBI GI: 24308334
Description:

family with sequence similarity 120B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         38           2
 C cysteine            4.0         36           2
 D aspartate           4.5         41           1
 E glutamate           8.7         79           2
 F phenylalanine       3.6         33           3
 G glycine             5.7         52           2
 H histidine           2.2         20           2
 I isoleucine          4.2         38           2
 K lysine              4.6         42           2
 L leucine             9.3         85           3
 M methionine          2.7         25           1
 N asparagine          2.6         24           2
 P proline             6.8         62           1
 Q glutamine           5.8         53           2
 R arginine            6.0         55           2
 S serine              7.6         69           3
 T threonine           5.5         50           2
 V valine              6.6         60           2
 W tryptophan          1.4         13           1
 Y tyrosine            3.8         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 120B 
FAM120A               0.056   oxidative stress-associated Src activator 
FAM120C               0.048   hypothetical protein LOC54954 
FSCB                  0.017   fibrous sheath CABYR binding protein 
MLL                   0.013   myeloid/lymphoid or mixed-lineage leukemia protein [...
TTN                   0.012   titin isoform N2-A 
RGS3                  0.012   regulator of G-protein signalling 3 isoform 6 [Homo...
RGS3                  0.012   regulator of G-protein signalling 3 isoform 1 
MLL2                  0.012   myeloid/lymphoid or mixed-lineage leukemia 2 
RGS3                  0.011   regulator of G-protein signalling 3 isoform 2 
ACAN                  0.010   aggrecan isoform 2 precursor 
ACAN                  0.010   aggrecan isoform 1 precursor 
C14orf174             0.010   hypothetical protein LOC161394 
HIF1A                 0.009   hypoxia-inducible factor 1, alpha subunit isoform 2 ...
HIF1A                 0.009   hypoxia-inducible factor 1, alpha subunit isoform 1 [...
LOC651986             0.009   PREDICTED: similar to forkhead box L2 
PCDH15                0.008   protocadherin 15 isoform CD2-1 precursor 
EXO1                  0.008   exonuclease 1 isoform b 
EXO1                  0.008   exonuclease 1 isoform a 
EXO1                  0.008   exonuclease 1 isoform b 
SIT1                  0.008   SHP2-interacting transmembrane adaptor protein 
GPRASP1               0.008   G protein-coupled receptor associated sorting prote...
GPRASP1               0.008   G protein-coupled receptor associated sorting prote...
GPRASP1               0.008   G protein-coupled receptor associated sorting prote...
GPRASP2               0.008   G protein-coupled receptor associated sorting protei...
GPRASP2               0.008   G protein-coupled receptor associated sorting protei...
C1orf113              0.008   SH3 domain-containing protein C1orf113 isoform 1 [H...
C1orf113              0.008   SH3 domain-containing protein C1orf113 isoform 2 [H...
ZNF777                0.008   zinc finger protein 777 
MUC17                 0.007   mucin 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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