Guide to the Human Genome
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Name: LOC100132257 Sequence: fasta or formatted (197aa) NCBI GI: 239744894
Description:

PREDICTED: similar to Putative ankyrin repeat domain-containing protein ENSP00000383069

Referenced in:

Ankyrin Family

Other entries for this name:
alt prot [157aa] PREDICTED: similar to Putative ankyrin repeat domain-containing p...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         23           1
 C cysteine            5.1         10           1
 D aspartate           6.1         12           1
 E glutamate           4.1          8           1
 F phenylalanine       1.5          3           1
 G glycine             5.6         11           1
 H histidine           2.5          5           1
 I isoleucine          5.6         11           1
 K lysine              7.1         14           2
 L leucine             9.6         19           3
 M methionine          3.6          7           2
 N asparagine          7.1         14           1
 P proline             2.0          4           1
 Q glutamine           3.0          6           2
 R arginine            3.6          7           1
 S serine              3.6          7           2
 T threonine           5.1         10           2
 V valine             10.7         21           2
 W tryptophan          0.5          1           1
 Y tyrosine            2.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative ankyrin repeat domai... 
LOC730465             0.879   PREDICTED: similar to hCG1793014 
LOC100132257          0.745   PREDICTED: similar to Putative ankyrin repeat domai...
ANKRD30A              0.720   ankyrin repeat domain 30A 
ANKRD30B              0.672   ankyrin repeat domain 30B 
LOC729549             0.629   PREDICTED: similar to hCG1793014 
LOC729549             0.629   PREDICTED: similar to hCG1793014 
LOC729549             0.618   PREDICTED: similar to UNCoordinated family member (...
LOC729722             0.599   PREDICTED: ankyrin repeat domain-containing protein...
LOC729722             0.599   PREDICTED: ankyrin repeat domain-containing protein...
LOC730465             0.594   PREDICTED: similar to Putative ankyrin repeat domai...
ANKRD18B              0.462   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.462   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.462   PREDICTED: ankyrin repeat domain 18B 
POTEH                 0.457   ANKRD26-like family C, member 3 
POTEA                 0.454   POTE ankyrin domain family, member A isoform 2 [Homo...
ANKRD20A4             0.454   ankyrin repeat domain 20 family, member A4 
POTEG                 0.454   POTE ankyrin domain family, member G 
P704P                 0.454   prostate-specific P704P 
ANKRD20A3             0.454   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.454   ankyrin repeat domain 20 family, member A2 
ANKRD20A1             0.452   ankyrin repeat domain 20 family, member A1 
POTEB                 0.452   protein expressed in prostate, ovary, testis, and pl...
POTEE                 0.449   protein expressed in prostate, ovary, testis, and p...
POTEF                 0.449   prostate, ovary, testis expressed protein on chromo...
LOC100287399          0.449   PREDICTED: hypothetical protein XP_002343353 
POTED                 0.446   pote protein 
LOC100288966          0.446   PREDICTED: hypothetical protein XP_002343915 isofor...
LOC100288966          0.446   PREDICTED: hypothetical protein XP_002343914 isofor...
POTEC                 0.444   ANKRD26-like family B, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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