Guide to the Human Genome
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Name: LOC729549 Sequence: fasta or formatted (366aa) NCBI GI: 169194585
Description:

PREDICTED: similar to hCG1793014

Not currently referenced in the text

Other entries for this name:
alt prot {393aa} PREDICTED: similar to UNCoordinated family member (unc-44)
alt prot {366aa} PREDICTED: similar to hCG1793014
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         41           2
 C cysteine            4.4         16           1
 D aspartate           3.8         14           1
 E glutamate           4.9         18           2
 F phenylalanine       2.7         10           2
 G glycine             7.9         29           2
 H histidine           2.5          9           2
 I isoleucine          3.8         14           1
 K lysine              4.6         17           1
 L leucine            10.9         40           3
 M methionine          2.2          8           1
 N asparagine          3.6         13           1
 P proline             7.1         26           4
 Q glutamine           1.6          6           2
 R arginine            7.9         29           2
 S serine              6.8         25           1
 T threonine           3.6         13           1
 V valine              6.8         25           2
 W tryptophan          1.4          5           1
 Y tyrosine            2.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1793014 
LOC729549             0.999   PREDICTED: similar to hCG1793014 
LOC729549             0.968   PREDICTED: similar to UNCoordinated family member (...
LOC730465             0.322   PREDICTED: similar to hCG1793014 
LOC100132257          0.322   PREDICTED: similar to Putative ankyrin repeat domai...
ANKRD30A              0.318   ankyrin repeat domain 30A 
ANKRD30B              0.291   ankyrin repeat domain 30B 
LOC729722             0.248   PREDICTED: ankyrin repeat domain-containing protein...
LOC730465             0.248   PREDICTED: similar to Putative ankyrin repeat domai...
LOC729722             0.248   PREDICTED: ankyrin repeat domain-containing protein...
LOC100132257          0.237   PREDICTED: similar to Putative ankyrin repeat domai...
ANKRD20A1             0.229   ankyrin repeat domain 20 family, member A1 
ANKRD20A4             0.229   ankyrin repeat domain 20 family, member A4 
ANKRD20A3             0.226   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.226   ankyrin repeat domain 20 family, member A2 
ANKRD20A5             0.223   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.223   PREDICTED: ankyrin repeat domain 20 family, member ...
POTEH                 0.213   ANKRD26-like family C, member 3 
P704P                 0.211   prostate-specific P704P 
ANKRD18B              0.211   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.211   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.211   PREDICTED: ankyrin repeat domain 18B 
POTEG                 0.209   POTE ankyrin domain family, member G 
POTEA                 0.209   POTE ankyrin domain family, member A isoform 2 [Homo...
POTEE                 0.208   protein expressed in prostate, ovary, testis, and p...
POTEF                 0.208   prostate, ovary, testis expressed protein on chromo...
LOC100287399          0.202   PREDICTED: hypothetical protein XP_002343353 
ANKRD18A              0.202   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.202   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.202   PREDICTED: ankyrin repeat domain 18A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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