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Search of human proteins with 239744883
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744883 PREDICTED: hypothetical protein XP_002344274 [Homo
sapiens]
(300 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750586 PREDICTED: hypothetical protein XP_002347439 [Homo ... 628 e-180
gi|239744883 PREDICTED: hypothetical protein XP_002344274 [Homo ... 628 e-180
gi|239755509 PREDICTED: hypothetical protein [Homo sapiens] 49 7e-06
gi|239750019 PREDICTED: hypothetical protein [Homo sapiens] 49 7e-06
gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo ... 49 7e-06
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 46 3e-05
gi|11386183 WAS protein family, member 2 [Homo sapiens] 46 5e-05
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 45 8e-05
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 44 1e-04
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [... 44 1e-04
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ... 44 2e-04
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ... 44 2e-04
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 44 2e-04
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 44 2e-04
gi|33286436 gametogenetin [Homo sapiens] 44 2e-04
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens] 43 3e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 43 3e-04
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 43 3e-04
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 43 4e-04
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 43 4e-04
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 42 5e-04
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 42 5e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 42 5e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 42 5e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 42 7e-04
gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens] 42 7e-04
gi|62422557 p21-activated kinase 4 isoform 1 [Homo sapiens] 42 7e-04
>gi|239750586 PREDICTED: hypothetical protein XP_002347439 [Homo
sapiens]
Length = 300
Score = 628 bits (1619), Expect = e-180
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MILADPLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRR 60
MILADPLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRR
Sbjct: 1 MILADPLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRR 60
Query: 61 GGRGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALL 120
GGRGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALL
Sbjct: 61 GGRGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALL 120
Query: 121 VCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAP 180
VCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAP
Sbjct: 121 VCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAP 180
Query: 181 SIPASNRACVHHSSIRQQCTSIPASNRASVYHSGIWQQCTSIPESNRACVHHSSIRQQCT 240
SIPASNRACVHHSSIRQQCTSIPASNRASVYHSGIWQQCTSIPESNRACVHHSSIRQQCT
Sbjct: 181 SIPASNRACVHHSSIRQQCTSIPASNRASVYHSGIWQQCTSIPESNRACVHHSSIRQQCT 240
Query: 241 SIPASNRACVHHSSIRQQCTSIPASKRASGNIPVSSGTCAPGRSSVVSFQARSKAKGIKR 300
SIPASNRACVHHSSIRQQCTSIPASKRASGNIPVSSGTCAPGRSSVVSFQARSKAKGIKR
Sbjct: 241 SIPASNRACVHHSSIRQQCTSIPASKRASGNIPVSSGTCAPGRSSVVSFQARSKAKGIKR 300
>gi|239744883 PREDICTED: hypothetical protein XP_002344274 [Homo
sapiens]
Length = 300
Score = 628 bits (1619), Expect = e-180
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MILADPLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRR 60
MILADPLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRR
Sbjct: 1 MILADPLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRR 60
Query: 61 GGRGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALL 120
GGRGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALL
Sbjct: 61 GGRGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALL 120
Query: 121 VCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAP 180
VCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAP
Sbjct: 121 VCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAP 180
Query: 181 SIPASNRACVHHSSIRQQCTSIPASNRASVYHSGIWQQCTSIPESNRACVHHSSIRQQCT 240
SIPASNRACVHHSSIRQQCTSIPASNRASVYHSGIWQQCTSIPESNRACVHHSSIRQQCT
Sbjct: 181 SIPASNRACVHHSSIRQQCTSIPASNRASVYHSGIWQQCTSIPESNRACVHHSSIRQQCT 240
Query: 241 SIPASNRACVHHSSIRQQCTSIPASKRASGNIPVSSGTCAPGRSSVVSFQARSKAKGIKR 300
SIPASNRACVHHSSIRQQCTSIPASKRASGNIPVSSGTCAPGRSSVVSFQARSKAKGIKR
Sbjct: 241 SIPASNRACVHHSSIRQQCTSIPASKRASGNIPVSSGTCAPGRSSVVSFQARSKAKGIKR 300
>gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 48.5 bits (114), Expect = 7e-06
Identities = 55/163 (33%), Positives = 64/163 (39%), Gaps = 36/163 (22%)
Query: 11 GGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAP-PGGGRALRRGGRGAARRK 69
G R V P E GGG GRGP + AA SL + P P G A RR R RR+
Sbjct: 171 GRRSDVQPQERGGGGR--GRGPPSQ---AAAFSLRHSRAQPWPSGRSAARRRRRLRRRRR 225
Query: 70 RKRRAPAP--------------VCHHRGSPGSPKFVSPPRS-PGSPAGAAQVPP-----P 109
R RA A HR P PR+ P PAG ++ PP P
Sbjct: 226 RGERAAAAAEFGLGGRTCVWQGAAQHRARPAG--LARAPRARPRDPAGVSRAPPRPRPHP 283
Query: 110 FPPVPGLHAL--------LVCGQPRSREWTERVQLPPRGRAWP 144
P PG AL G + R ++ PPRGRA P
Sbjct: 284 ASPAPGDGALRGAEATAPAALGLVQPRPKSDIDSPPPRGRAAP 326
>gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 48.5 bits (114), Expect = 7e-06
Identities = 55/163 (33%), Positives = 64/163 (39%), Gaps = 36/163 (22%)
Query: 11 GGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAP-PGGGRALRRGGRGAARRK 69
G R V P E GGG GRGP + AA SL + P P G A RR R RR+
Sbjct: 171 GRRSDVQPQERGGGGR--GRGPPSQ---AAAFSLRHSRAQPWPSGRSAARRRRRLRRRRR 225
Query: 70 RKRRAPAP--------------VCHHRGSPGSPKFVSPPRS-PGSPAGAAQVPP-----P 109
R RA A HR P PR+ P PAG ++ PP P
Sbjct: 226 RGERAAAAAEFGLGGRTCVWQGAAQHRARPAG--LARAPRARPRDPAGVSRAPPRPRPHP 283
Query: 110 FPPVPGLHAL--------LVCGQPRSREWTERVQLPPRGRAWP 144
P PG AL G + R ++ PPRGRA P
Sbjct: 284 ASPAPGDGALRGAEATAPAALGLVQPRPKSDIDSPPPRGRAAP 326
>gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo
sapiens]
Length = 344
Score = 48.5 bits (114), Expect = 7e-06
Identities = 55/163 (33%), Positives = 64/163 (39%), Gaps = 36/163 (22%)
Query: 11 GGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAP-PGGGRALRRGGRGAARRK 69
G R V P E GGG GRGP + AA SL + P P G A RR R RR+
Sbjct: 171 GRRSDVQPQERGGGGR--GRGPPSQ---AAAFSLRHSRAQPWPSGRSAARRRRRLRRRRR 225
Query: 70 RKRRAPAP--------------VCHHRGSPGSPKFVSPPRS-PGSPAGAAQVPP-----P 109
R RA A HR P PR+ P PAG ++ PP P
Sbjct: 226 RGERAAAAAEFGLGGRTCVWQGAAQHRARPAG--LARAPRARPRDPAGVSRAPPRPRPHP 283
Query: 110 FPPVPGLHAL--------LVCGQPRSREWTERVQLPPRGRAWP 144
P PG AL G + R ++ PPRGRA P
Sbjct: 284 ASPAPGDGALRGAEATAPAALGLVQPRPKSDIDSPPPRGRAAP 326
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 46.2 bits (108), Expect = 3e-05
Identities = 47/152 (30%), Positives = 59/152 (38%), Gaps = 18/152 (11%)
Query: 43 SLPRIGSAPPGGGRALRRGGRGAARRKRKRRAPAP---VCHHRGSPGSPKFVS---PPRS 96
S R S GGG RRGG G R+P P + +RG G S PP
Sbjct: 2 SRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPIP 61
Query: 97 PGSPAGAAQVPPPFPPVPGLHALLVCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAG 156
P P Q PPP P P QP + Q P + + PPPP S +PV
Sbjct: 62 PPPPHQQQQQPPPQQPPPQ--------QPPPHQPPPHPQ-PHQQQQPPPPPQDSSKPVVA 112
Query: 157 VEAAEAAAAQRAPSVWPHATRAAPSIPASNRA 188
A AP P ++ A P+ P ++ A
Sbjct: 113 QGPGPAPGVGSAP---PASSSAPPATPPTSGA 141
Score = 35.8 bits (81), Expect = 0.047
Identities = 43/150 (28%), Positives = 57/150 (38%), Gaps = 36/150 (24%)
Query: 6 PLPPHGGRLRVGPCECGGG----AAEAGRGPRQRFQP----PAAASLPRIGSAPPGGGRA 57
P PP G + P + GG AA G GP + P P +P G PGGG
Sbjct: 167 PTPPSSG-VPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMP--GGPKPGGGPG 223
Query: 58 L----------RRGGRGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVP 107
L RGG G R R+ P HH+G P PG P G ++
Sbjct: 224 LSTPGGHPKPPHRGG-GEPRGGRQHHPPYHQQHHQGPP-----------PGGPGGRSE-- 269
Query: 108 PPFPPVPGLHA-LLVCGQPRSREWTERVQL 136
G A L + +P + +T+R +L
Sbjct: 270 EKISDSEGFKANLSLLRRPGEKTYTQRCRL 299
Score = 30.0 bits (66), Expect = 2.6
Identities = 34/119 (28%), Positives = 38/119 (31%), Gaps = 27/119 (22%)
Query: 32 PRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAARRKRKRRAPAPVCHHRGSPGS---P 88
P Q+ QPP P+ S P G G+A PA PGS P
Sbjct: 93 PHQQQQPPPP---PQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGP 149
Query: 89 KFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQPRSREWTERVQLPPRGRAWPPPP 147
PP +P GA PPP PP G V P PPPP
Sbjct: 150 TPTPPPAVTSAPPGA---PPPTPPSSG------------------VPTTPPQAGGPPPP 187
Score = 29.6 bits (65), Expect = 3.4
Identities = 29/95 (30%), Positives = 33/95 (34%), Gaps = 35/95 (36%)
Query: 26 AEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAARRKRKRRAPAPVCHHRGSP 85
A G GP PP P + SAPPG AP P G P
Sbjct: 141 APPGSGPGPTPTPP-----PAVTSAPPG--------------------APPPTPPSSGVP 175
Query: 86 GSPKFVSPPRSPGSPAGAAQVPPPFP-----PVPG 115
+PP++ G P A VP P P P PG
Sbjct: 176 -----TTPPQAGGPPPPPAAVPGPGPGPKQGPGPG 205
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 45.8 bits (107), Expect = 5e-05
Identities = 45/130 (34%), Positives = 48/130 (36%), Gaps = 33/130 (25%)
Query: 31 GPRQRFQPPAAASLP---RIGSAPPGGGRALRRGGRGAARRKRKRRAPAPVCHHRGSPGS 87
GP+ F PP A P IG PP P PV GSPG+
Sbjct: 311 GPKPGFAPPPAPPPPPPPMIGIPPP----------------------PPPVGF--GSPGT 346
Query: 88 PKFVSPPRSPGSPAGAAQVPPPFPPVPGLHAL--LVCGQPRSREWTERVQLPPRGRAWPP 145
P SPP P P AA PPP PP L QP PP G PP
Sbjct: 347 PPPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPPPPPGP--PP 404
Query: 146 PPFT--SGRP 153
PPFT G+P
Sbjct: 405 PPFTGADGQP 414
Score = 28.9 bits (63), Expect = 5.8
Identities = 33/121 (27%), Positives = 38/121 (31%), Gaps = 35/121 (28%)
Query: 63 RGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVC 122
RG+ KR + H P +P SPP A PPP PP+ G
Sbjct: 282 RGSGLAGPKRSSVVSPSH---PPPAPPLGSPPGPKPGFAPPPAPPPPPPPMIG------- 331
Query: 123 GQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAPSI 182
+PP PPPP G P PS PH AAP
Sbjct: 332 -------------IPP-----PPPPVGFGSP-------GTPPPPSPPSFPPHPDFAAPPP 366
Query: 183 P 183
P
Sbjct: 367 P 367
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 45.1 bits (105), Expect = 8e-05
Identities = 52/187 (27%), Positives = 57/187 (30%), Gaps = 49/187 (26%)
Query: 6 PLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGA 65
P PP GG L + P G A GP Q P P PP G
Sbjct: 252 PPPPPGG-LPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGV--------- 301
Query: 66 ARRKRKRRAPAPVCH------HRGSPGSPKFVSPPRS---PGSPAGAAQVPPPFPPVPGL 116
PAP H H +PG V PP S P +P P PP PG+
Sbjct: 302 -------HPPAPGVHPPAPGVHPPAPG----VHPPTSGVHPPAPGVHPPAPGVHPPAPGV 350
Query: 117 HALLVCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHAT 176
H PP PP P P AGV AP+V P A
Sbjct: 351 H-------------------PPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAP 391
Query: 177 RAAPSIP 183
P P
Sbjct: 392 GVHPPAP 398
Score = 37.0 bits (84), Expect = 0.021
Identities = 44/149 (29%), Positives = 50/149 (33%), Gaps = 18/149 (12%)
Query: 37 QPPAAASLPRIGSAPPGGGRALRRGGRGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRS 96
+PPA SLP + PPG R G R P P PG PP
Sbjct: 216 KPPAPPSLP---AGPPGVKRPPPPLMNGLPPRP-----PLPESLPPPPPGGLPL--PPMP 265
Query: 97 PGSPAGAAQVPPPF--PPVPGLHALLVCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPV 154
P PA + PP PP PG+H P + PP PP P P
Sbjct: 266 PTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASG-----VHPPAPGVHPPAPGVH-PPA 319
Query: 155 AGVEAAEAAAAQRAPSVWPHATRAAPSIP 183
GV + AP V P A P P
Sbjct: 320 PGVHPPTSGVHPPAPGVHPPAPGVHPPAP 348
Score = 32.3 bits (72), Expect = 0.52
Identities = 31/97 (31%), Positives = 33/97 (34%), Gaps = 10/97 (10%)
Query: 89 KFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQPRSREWTERVQLPPRGRAWPPPPF 148
K PP P PAG V P PP L+ G P E + PP G P PP
Sbjct: 213 KMEKPPAPPSLPAGPPGVKRPPPP-------LMNGLPPRPPLPESLPPPPPG-GLPLPPM 264
Query: 149 TSGRPVAGVEAAEAAAAQRAPSVWPHATRAAPSIPAS 185
P AP V P A P PAS
Sbjct: 265 PPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHP--PAS 299
Score = 30.0 bits (66), Expect = 2.6
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 75 PAPVCHHRGSPG-SPKFVSPPRSPGSPAGAAQVPPPFPPVPGLH 117
PAP H S G P+ +P P +PA Q P PP PG+H
Sbjct: 360 PAPGVHPPPSAGVHPQ--APGVHPAAPAVHPQAPGVHPPAPGMH 401
>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
[Homo sapiens]
Length = 650
Score = 44.3 bits (103), Expect = 1e-04
Identities = 42/148 (28%), Positives = 60/148 (40%), Gaps = 14/148 (9%)
Query: 86 GSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQPR--SREWTERVQLPPRGRAW 143
GS + P+ P P A+Q PPP PP P L G P S T Q PP
Sbjct: 375 GSQQPPPQPQPPPPPPPASQQPPP-PPPPQAPVRLPPGGPLLPSASLTRGPQPPPLAVTV 433
Query: 144 PP-----PPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAPSIPASNRACVHHSSIRQQ 198
P PP G+P G++ A A A Q+ + +P+ P SN+ SS +
Sbjct: 434 PSSLPQSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSPGSSPQH- 492
Query: 199 CTSIPASNRASVYHSGIWQQCTSIPESN 226
S SV+ ++Q + ++N
Sbjct: 493 -----TSTLGSVFGDAYYEQQMAARQAN 515
Score = 29.6 bits (65), Expect = 3.4
Identities = 39/141 (27%), Positives = 49/141 (34%), Gaps = 20/141 (14%)
Query: 101 AGAAQVPP-PFPPVPGLHALLVCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEA 159
AG+ Q PP P PP P P S+ Q PP PPPP R G
Sbjct: 374 AGSQQPPPQPQPPPPP--------PPASQ------QPPP-----PPPPQAPVRLPPGGPL 414
Query: 160 AEAAAAQRAPSVWPHATRAAPSIPASNRACVHHSSIRQQCTSIPASNRASVYHSGIWQQC 219
+A+ R P P A S+P S S+ S PA + Q
Sbjct: 415 LPSASLTRGPQPPPLAVTVPSSLPQSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQS 474
Query: 220 TSIPESNRACVHHSSIRQQCT 240
+ P SN+ SS + T
Sbjct: 475 PTSPVSNQGFSPGSSPQHTST 495
>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
[Homo sapiens]
Length = 634
Score = 44.3 bits (103), Expect = 1e-04
Identities = 42/148 (28%), Positives = 60/148 (40%), Gaps = 14/148 (9%)
Query: 86 GSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQPR--SREWTERVQLPPRGRAW 143
GS + P+ P P A+Q PPP PP P L G P S T Q PP
Sbjct: 359 GSQQPPPQPQPPPPPPPASQQPPP-PPPPQAPVRLPPGGPLLPSASLTRGPQPPPLAVTV 417
Query: 144 PP-----PPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAPSIPASNRACVHHSSIRQQ 198
P PP G+P G++ A A A Q+ + +P+ P SN+ SS +
Sbjct: 418 PSSLPQSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSPGSSPQH- 476
Query: 199 CTSIPASNRASVYHSGIWQQCTSIPESN 226
S SV+ ++Q + ++N
Sbjct: 477 -----TSTLGSVFGDAYYEQQMAARQAN 499
Score = 29.6 bits (65), Expect = 3.4
Identities = 39/141 (27%), Positives = 49/141 (34%), Gaps = 20/141 (14%)
Query: 101 AGAAQVPP-PFPPVPGLHALLVCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEA 159
AG+ Q PP P PP P P S+ Q PP PPPP R G
Sbjct: 358 AGSQQPPPQPQPPPPP--------PPASQ------QPPP-----PPPPQAPVRLPPGGPL 398
Query: 160 AEAAAAQRAPSVWPHATRAAPSIPASNRACVHHSSIRQQCTSIPASNRASVYHSGIWQQC 219
+A+ R P P A S+P S S+ S PA + Q
Sbjct: 399 LPSASLTRGPQPPPLAVTVPSSLPQSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQS 458
Query: 220 TSIPESNRACVHHSSIRQQCT 240
+ P SN+ SS + T
Sbjct: 459 PTSPVSNQGFSPGSSPQHTST 479
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 43.9 bits (102), Expect = 2e-04
Identities = 56/165 (33%), Positives = 64/165 (38%), Gaps = 31/165 (18%)
Query: 19 CECGGGAAEAGRG--PRQRFQP-PAAASLPRIGSAPPGGGRAL------RRGGRGAAR-- 67
C G A RG P + P P AA+LP + PPG AL RG R R
Sbjct: 12 CRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREW 71
Query: 68 -----RKRKRRAP----APVCHHRGSPGSPKFVSPP----RSPGSPAGAAQVPPPFPPVP 114
R AP AP H GS P P R P + + P P P
Sbjct: 72 PQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPA- 130
Query: 115 GLHALLVCGQPRSREWT-ERVQLPPRGRAWPPPPFTSGRPVAGVE 158
GLH +PR ++ T V PPR A P P FT RPV G E
Sbjct: 131 GLHR---SREPRPQDGTPPPVDTPPR-TARPRPAFTP-RPVVGSE 170
>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
sapiens]
Length = 180
Score = 43.9 bits (102), Expect = 2e-04
Identities = 56/165 (33%), Positives = 64/165 (38%), Gaps = 31/165 (18%)
Query: 19 CECGGGAAEAGRG--PRQRFQP-PAAASLPRIGSAPPGGGRAL------RRGGRGAAR-- 67
C G A RG P + P P AA+LP + PPG AL RG R R
Sbjct: 12 CRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREW 71
Query: 68 -----RKRKRRAP----APVCHHRGSPGSPKFVSPP----RSPGSPAGAAQVPPPFPPVP 114
R AP AP H GS P P R P + + P P P
Sbjct: 72 PQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPA- 130
Query: 115 GLHALLVCGQPRSREWT-ERVQLPPRGRAWPPPPFTSGRPVAGVE 158
GLH +PR ++ T V PPR A P P FT RPV G E
Sbjct: 131 GLHR---SREPRPQDGTPPPVDTPPR-TARPRPAFTP-RPVVGSE 170
>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
sapiens]
Length = 180
Score = 43.9 bits (102), Expect = 2e-04
Identities = 56/165 (33%), Positives = 64/165 (38%), Gaps = 31/165 (18%)
Query: 19 CECGGGAAEAGRG--PRQRFQP-PAAASLPRIGSAPPGGGRAL------RRGGRGAAR-- 67
C G A RG P + P P AA+LP + PPG AL RG R R
Sbjct: 12 CRSGSHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREW 71
Query: 68 -----RKRKRRAP----APVCHHRGSPGSPKFVSPP----RSPGSPAGAAQVPPPFPPVP 114
R AP AP H GS P P R P + + P P P
Sbjct: 72 PQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPA- 130
Query: 115 GLHALLVCGQPRSREWT-ERVQLPPRGRAWPPPPFTSGRPVAGVE 158
GLH +PR ++ T V PPR A P P FT RPV G E
Sbjct: 131 GLHR---SREPRPQDGTPPPVDTPPR-TARPRPAFTP-RPVVGSE 170
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 43.5 bits (101), Expect = 2e-04
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 59 RRGGRGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHA 118
+ GG A + + +R+AP P RG P P PP + G P A+ PP P
Sbjct: 261 KTGGVEAVKNELRRQAPPPPPPSRGGPPPPP--PPPHNSGPPPPPARGRGAPPPPPSRAP 318
Query: 119 LLVCGQPRSREWTERVQLPPRGRAWPPPP 147
P + V PP R +PPPP
Sbjct: 319 TAAPPPPPPSRPSVAVPPPPPNRMYPPPP 347
Score = 38.1 bits (87), Expect = 0.010
Identities = 41/142 (28%), Positives = 47/142 (33%), Gaps = 20/142 (14%)
Query: 32 PRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAARRKRKRRAPAPVCHHRGS----PGS 87
P R PP P PP R RG + AP P R S P
Sbjct: 281 PPSRGGPPPPPPPPHNSGPPPPPARG--RGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPP 338
Query: 88 PKFVSPPRSPGSPAGAAQVPPPFPP-VPGLHALLVCGQPRSREWTERVQLPPRGRAWPPP 146
P + PP P P+ A PPP PP V G+ + P PP PPP
Sbjct: 339 PNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPP-----------PPPPPPGPPP 387
Query: 147 PFTSGRPVAGVEAAEAAAAQRA 168
P G P G A +A
Sbjct: 388 P--PGLPSDGDHQVPTTAGNKA 407
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 43.5 bits (101), Expect = 2e-04
Identities = 53/175 (30%), Positives = 61/175 (34%), Gaps = 40/175 (22%)
Query: 11 GGRLRVGPCECGG----GAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAA 66
G R+RVG E GG G A G PAAA P AP A R AA
Sbjct: 20 GRRVRVGVGEPGGFCLPGPALVVAGLDGIRPAPAAAHPP----APRERPAAARLSALAAA 75
Query: 67 RRKRKRRAPA------------PVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVP 114
+ +R+ P P RG+P P SP P P+ PPP P +P
Sbjct: 76 QPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARPSS----PPPRPSLP 131
Query: 115 -GLHALLVCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRA 168
G H R LPP A P PP P V A E R+
Sbjct: 132 SGPH---------------RPVLPPSALAAPRPPLARPLPQGSVTAREQEQRPRS 171
Score = 33.5 bits (75), Expect = 0.23
Identities = 49/165 (29%), Positives = 55/165 (33%), Gaps = 36/165 (21%)
Query: 24 GAAEAGRGPRQRFQPPAAASLPRIGSAPPGG----GRALRRGGRGAARRKRKRRAPAPVC 79
GAA G G +R R+G PGG G AL G R PAP
Sbjct: 11 GAAVRGGGAGRRV---------RVGVGEPGGFCLPGPALVVAGLDGIR-------PAPAA 54
Query: 80 HHRGSPG--------SPKFVSPPR--SPGSPAGAA-QVPPPFPPVPGLHALLVCGQPRSR 128
H +P S + PR SPG G + P PP AL G P
Sbjct: 55 AHPPAPRERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPP-----ALQPRGAPAVP 109
Query: 129 EWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWP 173
LP R + PP P P V A AA R P P
Sbjct: 110 AAPSPGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARP 154
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 43.5 bits (101), Expect = 2e-04
Identities = 53/175 (30%), Positives = 61/175 (34%), Gaps = 40/175 (22%)
Query: 11 GGRLRVGPCECGG----GAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAA 66
G R+RVG E GG G A G PAAA P AP A R AA
Sbjct: 20 GRRVRVGVGEPGGFCLPGPALVVAGLDGIRPAPAAAHPP----APRERPAAARLSALAAA 75
Query: 67 RRKRKRRAPA------------PVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVP 114
+ +R+ P P RG+P P SP P P+ PPP P +P
Sbjct: 76 QPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARPSS----PPPRPSLP 131
Query: 115 -GLHALLVCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRA 168
G H R LPP A P PP P V A E R+
Sbjct: 132 SGPH---------------RPVLPPSALAAPRPPLARPLPQGSVTAREQEQRPRS 171
Score = 33.5 bits (75), Expect = 0.23
Identities = 49/165 (29%), Positives = 55/165 (33%), Gaps = 36/165 (21%)
Query: 24 GAAEAGRGPRQRFQPPAAASLPRIGSAPPGG----GRALRRGGRGAARRKRKRRAPAPVC 79
GAA G G +R R+G PGG G AL G R PAP
Sbjct: 11 GAAVRGGGAGRRV---------RVGVGEPGGFCLPGPALVVAGLDGIR-------PAPAA 54
Query: 80 HHRGSPG--------SPKFVSPPR--SPGSPAGAA-QVPPPFPPVPGLHALLVCGQPRSR 128
H +P S + PR SPG G + P PP AL G P
Sbjct: 55 AHPPAPRERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPP-----ALQPRGAPAVP 109
Query: 129 EWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWP 173
LP R + PP P P V A AA R P P
Sbjct: 110 AAPSPGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARP 154
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 43.5 bits (101), Expect = 2e-04
Identities = 43/148 (29%), Positives = 52/148 (35%), Gaps = 16/148 (10%)
Query: 8 PPHGGRLRVG-PCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAA 66
PP GG G P G +G Q +PP P PP GG +G
Sbjct: 103 PPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPE--RPPPQGGNQ----SQGPP 156
Query: 67 RRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQPR 126
K P P ++ SPP P P P PP PG G P
Sbjct: 157 PHPGKPEGPPPQEGNKSRSAR----SPPGKPQGPPQQEGNKPQGPPPPGKPQ----GPPP 208
Query: 127 SREWTERVQLPPRGRA-WPPPPFTSGRP 153
+ ++ Q PP G+ PPPP GRP
Sbjct: 209 AGGNPQQPQAPPAGKPQGPPPPPQGGRP 236
Score = 35.4 bits (80), Expect = 0.062
Identities = 38/147 (25%), Positives = 45/147 (30%), Gaps = 14/147 (9%)
Query: 8 PPHGGRLRVGPCECGGGA-AEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAA 66
PP GG GP G +G Q PP P PP GG +G
Sbjct: 61 PPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPE--RPPPQGGNQ----SQGTP 114
Query: 67 RRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQPR 126
K P P ++ P P R P +Q PPP P P G P
Sbjct: 115 PPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPE-------GPPP 167
Query: 127 SREWTERVQLPPRGRAWPPPPFTSGRP 153
R P G+ PP +P
Sbjct: 168 QEGNKSRSARSPPGKPQGPPQQEGNKP 194
Score = 31.6 bits (70), Expect = 0.89
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 32/105 (30%)
Query: 62 GRGAARRKRKRRAPAPVCHHRGSP--GSPKFVSPPRSPGSPAGA-------AQVPPPFPP 112
GR + +R P P +G P G + PP PG P G +Q PPP P
Sbjct: 38 GRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHP- 96
Query: 113 VPGLHALLVCGQPRSREWTERVQLPPRG----RAWPPPPFTSGRP 153
G+P + PP+G + PPPP RP
Sbjct: 97 ----------GKPE--------RPPPQGGNQSQGTPPPPGKPERP 123
Score = 30.4 bits (67), Expect = 2.0
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 8 PPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAAR 67
PPH G+ P + G + A P + PP G PPG +G A
Sbjct: 156 PPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPG----KPQGPPPAGG 211
Query: 68 RKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVP 107
++ +AP P +G P P+ PPR PA Q P
Sbjct: 212 NPQQPQAP-PAGKPQGPPPPPQGGRPPR----PAQGQQPP 246
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 43.5 bits (101), Expect = 2e-04
Identities = 65/227 (28%), Positives = 75/227 (33%), Gaps = 54/227 (23%)
Query: 6 PLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAA------------------SLPRI 47
PLPP R +G G AE G G + P +A S P+
Sbjct: 293 PLPPGAAR-PLGEVSRGAQEAEGGDGDGEGCSGPPSAPASQARALPPPPYTTFPGSKPKF 351
Query: 48 G--SAPPGGGRALRRGGRGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQ 105
SAP G R R G G +RRA A P P+ + P PA A
Sbjct: 352 DWVSAPDGPERHFRFNGAGGGIGAPRRRAAALSGPWGSPPPPPEQIHSAPGPRRPAPALL 411
Query: 106 VPPPFP-PVPGLHALLVCGQPRSREWTERVQLPPRGRAWPP----------------PPF 148
PP F P P + G P +E LPP PP PP
Sbjct: 412 APPTFIFPAPTNGEPMRPGPPGLQE------LPPLPPPTPPPTLQPPALQPTPLPVAPPL 465
Query: 149 TSG--------RPVAGVEAAEAAAAQR--APSVWPHATRAAPSIPAS 185
T G P A A AA + APS P T A PS P S
Sbjct: 466 TPGLGHKESALAPTAAPALPPALAADQAPAPSPAPAPTVAEPSPPVS 512
Score = 30.8 bits (68), Expect = 1.5
Identities = 31/109 (28%), Positives = 38/109 (34%), Gaps = 18/109 (16%)
Query: 8 PPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAAR 67
PP GGG G G + A + + G PPG R L RGA
Sbjct: 255 PPAASSSLAAKASLGGGG---GGGLFAASGAISYAEVLKQGPLPPGAARPLGEVSRGAQE 311
Query: 68 RKRKRRAPAPVCHHRGSPGSPKFVS-PPRSPGSPAGAAQVPPPFPPVPG 115
+ G G + S PP +P S A A PPP+ PG
Sbjct: 312 AE-------------GGDGDGEGCSGPPSAPASQARALP-PPPYTTFPG 346
Score = 29.3 bits (64), Expect = 4.4
Identities = 34/129 (26%), Positives = 39/129 (30%), Gaps = 43/129 (33%)
Query: 92 SPPRSPGSPAGAAQVPPPFP-----------------PVPGLHALLVCGQ---------- 124
SP P A A PPP P PVP + LL
Sbjct: 81 SPVMPPPEEAAAVSAPPPAPAGTLLPGPSKWQKPAGTPVPRIRRLLEASHRGQGDPPSLR 140
Query: 125 -------PRSREWTERV-----QLPPRGRAW-PPPPFTSGRPVAGVEAAEAAAAQRAPSV 171
PR + V Q PP W PPPP S R A A A +P
Sbjct: 141 PLKPPPPPRQLSVKDTVPRAPSQFPPPLETWKPPPPLPSERQPADRRITPALATPASP-- 198
Query: 172 WPHATRAAP 180
P ++A P
Sbjct: 199 -PTESQAGP 206
>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 43.1 bits (100), Expect = 3e-04
Identities = 73/312 (23%), Positives = 115/312 (36%), Gaps = 63/312 (20%)
Query: 18 PCECGGGAAEAGRGPRQRFQPPAA---ASLPRIGS-APPGGGRAL--RRG-GRGAARRKR 70
P GGG A R R+R A S P++G+ P ++L RG GRG RR++
Sbjct: 60 PANRGGGPVGAPRVSRRREGLRALKVPGSEPQVGAEVRPSSRKSLSDHRGLGRGRRRRRQ 119
Query: 71 KRR--APAPVCHHRGSPG-------------------SPKFVSPPRSPGS---------- 99
+RR AP R P SP++ S S S
Sbjct: 120 RRRWGTQAPCGRLRAKPALQTQRKEPLVFTQRSLLHSSPRWFSSRHSSISEGEGDRCGFA 179
Query: 100 --PAGAAQVPPPFPPVPGLHALLVCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGV 157
P G++ PP PP P G P R PP PP + RP+
Sbjct: 180 EPPGGSSPPAPPLPPPP------KPGSPTQRAREASSWKPPGHSHTAPPGRGTQRPLTQR 233
Query: 158 EAAEAAAAQRAPSVWPHATRAAPSIPASNRACVHHSSIRQQCTSIPASNRASVYHSGI-W 216
++E ++++ + S WP + P Q+ + P + A++ G+
Sbjct: 234 HSSE-SSSELSSSAWPGTIWTSTLSPG------------QRLPTPPPPDPAALTSWGLPQ 280
Query: 217 QQCTSIPESNRACVHHSSI---RQQCTSIPASNRACVHHSSIRQQCTSIPASKRASGNIP 273
QQ +PE + ++ +Q S + + H R +P +RA+G +
Sbjct: 281 QQGACVPEGIALALRCRAMGPWEEQNWSATSGSPGPGPHPRSRPTPPRLPYPRRAAGTVG 340
Query: 274 VSSGTCAPGRSS 285
+ + PG SS
Sbjct: 341 IGRPSRGPGGSS 352
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 43.1 bits (100), Expect = 3e-04
Identities = 69/235 (29%), Positives = 79/235 (33%), Gaps = 37/235 (15%)
Query: 4 ADPLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAP-------PGGGR 56
A P P R GP G G GP + P AA +L GSA
Sbjct: 158 AKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLN--GSAALLNSHHAAAPAV 215
Query: 57 ALRRGGRGAARRKRKRRAPAPVCHH-----RGSPGSPKFVSPPRSPGSPAGAAQVPPPFP 111
+L G A K AP V +P +P SPP +P A AA PPP P
Sbjct: 216 SLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPP-P 274
Query: 112 PVPGLHALLVCGQPRSREWTERVQLPPRGR-------AWPPPPFTSGRP--VAGVEAAEA 162
P P A G P PP A P P +G P V+G A
Sbjct: 275 PAPATLA-RPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGA 333
Query: 163 AAAQRAPSVW------------PHATRAAPSIPASNRACVHHSSIRQQCTSIPAS 205
AAA AP V P A A S PAS A + Q PA+
Sbjct: 334 AAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAA 388
Score = 38.9 bits (89), Expect = 0.006
Identities = 60/218 (27%), Positives = 68/218 (31%), Gaps = 51/218 (23%)
Query: 4 ADPLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPG---------- 53
A P PP GR R G G GP++ P L G APP
Sbjct: 85 AAPEPPPAGRARPG-----------GGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGS 133
Query: 54 --------GGRALRRGGRGAARRKRKRRAPAPVCHHRG-SPGSPKFVSPPRSPGSPAG-- 102
A+ G A K PA + G PG P PG PAG
Sbjct: 134 AGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPG 193
Query: 103 --------AAQVPPPFPPVP-------GLHALLVCGQPRSREWTERVQLPP-RGRAWPPP 146
AA + P G ALL +P + +Q PP G A PP
Sbjct: 194 AAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTV--IQTPPFVGAAAPPA 251
Query: 147 PFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAPSIPA 184
P P A AA AAA P P P PA
Sbjct: 252 PAAPSPPAAPAPAAPAAAPPPPPPA-PATLARPPGHPA 288
Score = 35.8 bits (81), Expect = 0.047
Identities = 35/108 (32%), Positives = 39/108 (36%), Gaps = 17/108 (15%)
Query: 24 GAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAARRKRKRRAPAPVCHHRG 83
GAA AG P AA P G A PGGG +R G + RR PAP
Sbjct: 69 GAAGAGPAAPAEGAPGAAPEPPPAGRARPGGG-GPQRPGPPSPRRPLVPAGPAPPAAKLR 127
Query: 84 SP--GSPKFVSP--------------PRSPGSPAGAAQVPPPFPPVPG 115
P GS +P P P PAG A + P PG
Sbjct: 128 PPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPG 175
Score = 33.5 bits (75), Expect = 0.23
Identities = 40/126 (31%), Positives = 47/126 (37%), Gaps = 6/126 (4%)
Query: 65 AARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQ 124
A R R A A + GSP + P +PA A P PP G G
Sbjct: 44 APRTPEVRAAAAGALGNHVVSGSPAGAAGA-GPAAPAEGAPGAAPEPPPAGRARPGGGGP 102
Query: 125 PRSREWTERVQLPPRGRAWP-----PPPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAA 179
R + R L P G A P PPP S A V AA A AA P+ A A
Sbjct: 103 QRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAG 162
Query: 180 PSIPAS 185
P+ A+
Sbjct: 163 PAALAA 168
Score = 32.0 bits (71), Expect = 0.68
Identities = 52/215 (24%), Positives = 64/215 (29%), Gaps = 35/215 (16%)
Query: 2 ILADPLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRG 61
+L P P G + P G A A P P AA PP R
Sbjct: 225 LLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPP 284
Query: 62 GRGAARRKRKRRAPAPVC-HHRGSPGSPKFVSPPRSPGSPAGAAQVPPP----FPPVPGL 116
G A P P + GS G+ +P + G PAG + P P P PG+
Sbjct: 285 GHPAGPPTAAPAVPPPAAAQNGGSAGAAP--APAPAAGGPAGVSGQPGPGAAAAAPAPGV 342
Query: 117 HA---------------LLVCGQPRSREW------TERVQLPPRGRAWPPPPFTSGRPVA 155
A L P S T + LP PP P T
Sbjct: 343 KAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPK 402
Query: 156 GVEAAEAAAAQRAPSVWPHATRA-------APSIP 183
G A + R P+ RA AP +P
Sbjct: 403 GAAGAVTQSLSRTPTATTSGIRATLTPTVLAPRLP 437
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 43.1 bits (100), Expect = 3e-04
Identities = 48/155 (30%), Positives = 55/155 (35%), Gaps = 30/155 (19%)
Query: 8 PPHGGRLRVGPC-ECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAA 66
PP GG GP G +G Q PP P G P GG ++ +G
Sbjct: 166 PPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPE-GPPPQGGNQS-----QGPP 219
Query: 67 RRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPF-------PPVPGLHAL 119
R K P S G K PP PG P G PPP PP PG
Sbjct: 220 PRPGKPEGPP-------SQGGNKPQGPPPHPGKPQG----PPPQEGNKPQRPPPPGRPQ- 267
Query: 120 LVCGQPRSREWTERVQLPPRGRAW-PPPPFTSGRP 153
G P ++ PP G+ PPPP GRP
Sbjct: 268 ---GPPPPGGNPQQPLPPPAGKPQGPPPPPQGGRP 299
Score = 42.4 bits (98), Expect = 5e-04
Identities = 39/141 (27%), Positives = 49/141 (34%), Gaps = 15/141 (10%)
Query: 8 PPHGGRLRVGPC-ECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAA 66
PP GG GP G +G Q PP P G P GG ++ +G
Sbjct: 145 PPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPE-GPPPQGGNQS-----QGPP 198
Query: 67 RRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQPR 126
R K P P ++ P+ P P Q PPP P P P
Sbjct: 199 PRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKP--------QGPP 250
Query: 127 SREWTERVQLPPRGRAWPPPP 147
+E + + PP GR PPP
Sbjct: 251 PQEGNKPQRPPPPGRPQGPPP 271
Score = 38.1 bits (87), Expect = 0.010
Identities = 42/149 (28%), Positives = 52/149 (34%), Gaps = 30/149 (20%)
Query: 8 PPHGGRLRVGPC-ECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAA 66
PP GG GP G + +G Q PP P G P GG ++ +G
Sbjct: 82 PPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPE-GPPPQGGNQS-----QGPP 135
Query: 67 RRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGA-------AQVPPPFPPVPGLHAL 119
R K P P G + PP PG P G +Q PPP P P
Sbjct: 136 PRPGKPEGPPP-------QGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKP----- 183
Query: 120 LVCGQPRSREWTERVQLPPR-GRAWPPPP 147
P + + PPR G+ PPP
Sbjct: 184 ---EGPPPQGGNQSQGPPPRPGKPEGPPP 209
Score = 31.2 bits (69), Expect = 1.2
Identities = 35/133 (26%), Positives = 46/133 (34%), Gaps = 32/133 (24%)
Query: 23 GGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAARRKRKRRAPAPVCHHR 82
G + G P++ PP G P GG ++ +G R K P P
Sbjct: 38 GRRPQGGNQPQRTPPPPGKPE----GRPPQGGNQS-----QGPPPRPGKPEGPPP----- 83
Query: 83 GSPGSPKFVSPPRSPGSPAGA-------AQVPPPFPPVPGLHALLVCGQPRSREWTERVQ 135
G + PP PG P G +Q PPP P P P + +
Sbjct: 84 --QGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKP--------EGPPPQGGNQSQG 133
Query: 136 LPPR-GRAWPPPP 147
PPR G+ PPP
Sbjct: 134 PPPRPGKPEGPPP 146
Score = 30.8 bits (68), Expect = 1.5
Identities = 39/130 (30%), Positives = 47/130 (36%), Gaps = 21/130 (16%)
Query: 8 PPHGGRLRVGPC-ECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRG----- 61
PP GG GP G +G Q PP P PP G +G
Sbjct: 187 PPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPE---GPPSQGGNKPQGPPPHP 243
Query: 62 GRGAA---RRKRKRRAPAPVCHHRGSP---GSPKFVSPPRSPGSPAGAAQVPPPFPPVPG 115
G+ + K + P P +G P G+P+ PP PAG Q PPP PP G
Sbjct: 244 GKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPP-----PAGKPQGPPP-PPQGG 297
Query: 116 LHALLVCGQP 125
GQP
Sbjct: 298 RPHRPPQGQP 307
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 42.7 bits (99), Expect = 4e-04
Identities = 48/170 (28%), Positives = 61/170 (35%), Gaps = 41/170 (24%)
Query: 24 GAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAARRKRKRR---------- 73
GA E P Q PP P GSAPP R+ RR
Sbjct: 1830 GAPER-HSPIQNLDPPLR---PDSGSAPPPAPRSFSGARIKVPNYSPSRRPLGGVSFGPL 1885
Query: 74 ----APAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPP----FPP--------VPGLH 117
+P+ + HH + G P F +PPR P+ A PPP PP VP
Sbjct: 1886 PSPGSPSSLTHHIPTVGDPDFPAPPRRSRRPSPLAPRPPPSRWASPPLKTSPQLRVPPPT 1945
Query: 118 ALLVCGQPRSREWTERVQLPPRGRAWPPPP------FTSGRPVAGVEAAE 161
+++ P S E PP PPPP F V+G+ AA+
Sbjct: 1946 SVVTALTPTSGELA-----PPGPAPSPPPPEDLGPDFEDMEVVSGLSAAD 1990
Score = 32.3 bits (72), Expect = 0.52
Identities = 55/197 (27%), Positives = 69/197 (35%), Gaps = 41/197 (20%)
Query: 16 VGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGG----------RGA 65
V P C P QR + AA + P G++PP + GG +
Sbjct: 460 VVPATCSRKRGRPPLTPSQRAEREAARAGPE-GTSPPTPTPSTATGGPPEDSPTVAPKST 518
Query: 66 ARRKRKRRAPAPVCHHRGS--------------PGSPKF-----VSPP--RSPGSPAGAA 104
K R+ PV R S P PK + PP SP P A
Sbjct: 519 TFLKNIRQFIMPVVSARSSRVIKTPRRFMDEDPPKPPKVEVSPVLRPPITTSPPVPQEPA 578
Query: 105 QVP-PPFPPVPGLHALLVCGQPRS--RE----WTERV-QLPPRGRAWPPPPFTSGRPVAG 156
VP PP P P + + + RS RE WT +LPP A PPPP P A
Sbjct: 579 PVPSPPRAPTPPSTPVPLPEKRRSILREPTFRWTSLTRELPPPPPAPPPPP-APSPPPAP 637
Query: 157 VEAAEAAAAQRAPSVWP 173
++ RAP P
Sbjct: 638 ATSSRRPLLLRAPQFTP 654
Score = 32.3 bits (72), Expect = 0.52
Identities = 49/199 (24%), Positives = 65/199 (32%), Gaps = 39/199 (19%)
Query: 26 AEAGRGPRQRFQPPAAASLPRIGSAPPGGGRA-----------------LRRGGRGAARR 68
AEA + PR + PP+ + R G G RA L G G A
Sbjct: 2072 AEAVQQPRGQGTPPSGPGVVRAGVLGAAGDRARPPEDLPSEIVDFVLKNLGGPGDGGAGP 2131
Query: 69 KRKRRAPAPVCHHRGSPGSPKFVSPPRS-------PGSPA--GAAQVPPPFPPVPGLHAL 119
+ + PAP + P SP PG+P + P P PP P +
Sbjct: 2132 REESLPPAPPLANGSQPSQGLTASPADPTRTFAWLPGAPGVRVLSLGPAPEPPKPATSKI 2191
Query: 120 LV---CGQPRSREWTERVQLPPRGRAWPPPPFTSGR----------PVAGVEAAEAAAAQ 166
++ GQ + E +PP + P PP S P+ GV
Sbjct: 2192 ILVNKLGQVFVKMAGEGEPVPPPVKQPPLPPTISPTAPTSWTLPPGPLLGVLPVVGVVRP 2251
Query: 167 RAPSVWPHATRAAPSIPAS 185
P P T S PAS
Sbjct: 2252 APPPPPPPLTLVLSSGPAS 2270
Score = 30.0 bits (66), Expect = 2.6
Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 75 PAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQPRSREWTERV 134
P P+C P SP + P P + + PPP P C + R R
Sbjct: 425 PPPLCPPPPPPVSPPPLPSPPPPPAQEEQEESPPPVVPA-------TCSRKRGRPPLTPS 477
Query: 135 QLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHAT 176
Q R A P TS P A + +P+V P +T
Sbjct: 478 QRAEREAARAGPEGTS-PPTPTPSTATGGPPEDSPTVAPKST 518
Score = 29.3 bits (64), Expect = 4.4
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 21/111 (18%)
Query: 66 ARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPF--PPVPGLHALLVCG 123
A K + + P P P +P SPP P P + PPP PP P + +
Sbjct: 393 AAEKEEAKLPPP-------PLTPPAPSPP--PPLPPPSTSPPPPLCPPPPPPVSPPPLPS 443
Query: 124 QPRSREWTERVQLPPRGRAWPPPPFTSGR-----PVAGVEAAEAAAAQRAP 169
P E+ + PP P P T R P+ + AE AA+ P
Sbjct: 444 PPPPPAQEEQEESPP-----PVVPATCSRKRGRPPLTPSQRAEREAARAGP 489
Score = 28.5 bits (62), Expect = 7.6
Identities = 30/122 (24%), Positives = 41/122 (33%), Gaps = 23/122 (18%)
Query: 69 KRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPP--FPPVPGLHALLVCGQPR 126
+++ RA A K PP +P +P+ +PPP PP P +C
Sbjct: 380 EKEERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPPSTSPPPP------LC---- 429
Query: 127 SREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAPSIPASN 186
PP PPP S P E E + P+ R P + S
Sbjct: 430 ----------PPPPPPVSPPPLPSPPPPPAQEEQEESPPPVVPATCSR-KRGRPPLTPSQ 478
Query: 187 RA 188
RA
Sbjct: 479 RA 480
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 42.7 bits (99), Expect = 4e-04
Identities = 49/186 (26%), Positives = 73/186 (39%), Gaps = 21/186 (11%)
Query: 23 GGAAEAGRGPRQRFQPPAAASLPRIGS----APPGGGRALRRGGRGAARRKRKRR----- 73
G AE G +R + AAS+ GS A P R ++ G R R
Sbjct: 1738 GRQAEGEMGSARRPEKRGAASVKTSGSPRSPAGPEKPRGTQKTTPGVPAVLRGRTVIYVP 1797
Query: 74 APAPVCHHRGSPG---SPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQPRSREW 130
+PAP +G+PG +P+ V+PP PA A+VP P G +P
Sbjct: 1798 SPAPRAQPKGTPGPRATPRKVAPP-CLAQPAAPAKVPSP-----GQQRSRSLHRPAKTSE 1851
Query: 131 TERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAPSIPASNRACV 190
+ PPR PP + + + + A+Q P P T+AA ++P + V
Sbjct: 1852 LATLSQPPRSAT---PPARLAKTPSSSSSQTSPASQPLPRKRPPVTQAAGALPGPGASPV 1908
Query: 191 HHSSIR 196
+ R
Sbjct: 1909 PKTPAR 1914
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 42.4 bits (98), Expect = 5e-04
Identities = 50/158 (31%), Positives = 57/158 (36%), Gaps = 24/158 (15%)
Query: 8 PPHGGRLRVGPCECGGGAAEAGR-----GPR-QRFQPPAAASLPRIGS--APPGGGRALR 59
PP + P GGG G G R QR Q AA L G A P G R R
Sbjct: 72 PPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRR 131
Query: 60 -------RGGRGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPG-SPAGAAQVPPPFP 111
RGGRGA R ++ A + +P+ PP P + A
Sbjct: 132 LQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGAR 191
Query: 112 PVPGLHALLVCGQPRSRE-WTERVQLPPRGRAWPPPPF 148
PVPG G RE W R PPRG A PF
Sbjct: 192 PVPG-------GPAGPRESWARRTSSPPRGAAGGGRPF 222
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 42.4 bits (98), Expect = 5e-04
Identities = 50/158 (31%), Positives = 57/158 (36%), Gaps = 24/158 (15%)
Query: 8 PPHGGRLRVGPCECGGGAAEAGR-----GPR-QRFQPPAAASLPRIGS--APPGGGRALR 59
PP + P GGG G G R QR Q AA L G A P G R R
Sbjct: 72 PPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRR 131
Query: 60 -------RGGRGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPG-SPAGAAQVPPPFP 111
RGGRGA R ++ A + +P+ PP P + A
Sbjct: 132 LQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGAR 191
Query: 112 PVPGLHALLVCGQPRSRE-WTERVQLPPRGRAWPPPPF 148
PVPG G RE W R PPRG A PF
Sbjct: 192 PVPG-------GPAGPRESWARRTSSPPRGAAGGGRPF 222
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 42.4 bits (98), Expect = 5e-04
Identities = 42/164 (25%), Positives = 58/164 (35%), Gaps = 10/164 (6%)
Query: 6 PLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGA 65
PLP P + AA +G ++ +P A + PP R+ G
Sbjct: 503 PLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQ 562
Query: 66 ARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQP 125
A R+ PAP PG + PP+ P PAG + PVP G P
Sbjct: 563 ATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPR------TGPP 616
Query: 126 RSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAP 169
T++ + G A P P + +P V AAA P
Sbjct: 617 T----TQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPP 656
Score = 37.0 bits (84), Expect = 0.021
Identities = 53/210 (25%), Positives = 71/210 (33%), Gaps = 37/210 (17%)
Query: 8 PPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRR--GGRGA 65
PP GG + GP +GP + +PP G PP G +R A
Sbjct: 462 PPQGGPPQPGP-------GPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSA 514
Query: 66 ARRKRKRRAPAPVCHHR------GSPGSPKFVSPPRSP------GSPAGAAQVPPPFPPV 113
++ + AP R G PG+P PP SP G P Q P
Sbjct: 515 PQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAP 574
Query: 114 PGLHALLVCGQPR-------------SREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAA 160
P GQ R +R+ ++ +P G P SG AG
Sbjct: 575 PKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAG-RPK 633
Query: 161 EAAAAQRAPSVWPHATRAA--PSIPASNRA 188
A + + V P AT AA P P N++
Sbjct: 634 PQLAQKPSQDVPPPATAAAGGPPHPQLNKS 663
Score = 36.6 bits (83), Expect = 0.028
Identities = 38/157 (24%), Positives = 54/157 (34%), Gaps = 15/157 (9%)
Query: 10 HGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAARRK 69
HG G G ++ GP + +PP P+ G P G L++ ++
Sbjct: 433 HGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQH 492
Query: 70 RKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPP-----PFPPVPGLHALLVCGQ 124
P GSP + SP +P PA A P PV G +
Sbjct: 493 LSGLGPP-----AGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAAR 547
Query: 125 PRSREWTERVQLPPRGR-----AWPPPPFTSGRPVAG 156
P + +R PP+ + P PP SG P G
Sbjct: 548 PPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGG 584
Score = 28.5 bits (62), Expect = 7.6
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 141 RAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAPSIPASNRACVHHSSIRQQCT 200
R PPPP A A+R+ V P A+ AAPS P S+ SS+
Sbjct: 27 RPQPPPPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPS-PGSSGGGGFFSSLSNAVK 85
Query: 201 SIPASNRAS 209
A+ A+
Sbjct: 86 QTTAAAAAT 94
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 42.4 bits (98), Expect = 5e-04
Identities = 42/164 (25%), Positives = 58/164 (35%), Gaps = 10/164 (6%)
Query: 6 PLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGA 65
PLP P + AA +G ++ +P A + PP R+ G
Sbjct: 503 PLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQ 562
Query: 66 ARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQP 125
A R+ PAP PG + PP+ P PAG + PVP G P
Sbjct: 563 ATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPR------TGPP 616
Query: 126 RSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAP 169
T++ + G A P P + +P V AAA P
Sbjct: 617 T----TQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPP 656
Score = 36.6 bits (83), Expect = 0.028
Identities = 38/157 (24%), Positives = 54/157 (34%), Gaps = 15/157 (9%)
Query: 10 HGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAARRK 69
HG G G ++ GP + +PP P+ G P G L++ ++
Sbjct: 433 HGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQH 492
Query: 70 RKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPP-----PFPPVPGLHALLVCGQ 124
P GSP + SP +P PA A P PV G +
Sbjct: 493 LSGLGPP-----AGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAAR 547
Query: 125 PRSREWTERVQLPPRGR-----AWPPPPFTSGRPVAG 156
P + +R PP+ + P PP SG P G
Sbjct: 548 PPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGG 584
Score = 28.5 bits (62), Expect = 7.6
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 141 RAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAPSIPASNRACVHHSSIRQQCT 200
R PPPP A A+R+ V P A+ AAPS P S+ SS+
Sbjct: 27 RPQPPPPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPS-PGSSGGGGFFSSLSNAVK 85
Query: 201 SIPASNRAS 209
A+ A+
Sbjct: 86 QTTAAAAAT 94
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 42.0 bits (97), Expect = 7e-04
Identities = 54/180 (30%), Positives = 64/180 (35%), Gaps = 35/180 (19%)
Query: 4 ADPLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLP----RIGSAPPGG----- 54
A P P G GP G A +G R PP A P R+G P G
Sbjct: 838 AGPPGPAGPAGPPGPI--GNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPP 895
Query: 55 ---GRALRRGGRGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGS--PAGAAQVPPP 109
G A + GG+G R PA G PG P SPG+ PAGA P P
Sbjct: 896 GPPGPAGKEGGKGP----RGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGP 951
Query: 110 FPPVPGLHALLVCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAP 169
+ G V G P R R +P P SG P G + A+ +R P
Sbjct: 952 -QGIAGQRG--VVGLPGQR----------GERGFPGLPGPSGEP--GKQGPSGASGERGP 996
Score = 37.0 bits (84), Expect = 0.021
Identities = 35/110 (31%), Positives = 42/110 (38%), Gaps = 6/110 (5%)
Query: 3 LADPLPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGG 62
+A P P G R GP G EAGR P + P A GS P G + G
Sbjct: 501 VAGPKGPAGERGSPGPAGPKGSPGEAGR-PGEAGLPGAKGLTGSPGSPGPDG----KTGP 555
Query: 63 RGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPP 112
G A + + P P RG G F P + G P A + P PP
Sbjct: 556 PGPAGQDGRPGPPGPP-GARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP 604
Score = 33.5 bits (75), Expect = 0.23
Identities = 35/106 (33%), Positives = 38/106 (35%), Gaps = 7/106 (6%)
Query: 11 GGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGG--GRALRRGGRGAARR 68
G R GP G E G GP R P A G A G G A +G G A R
Sbjct: 470 GARGEPGPTGLPGPPGERG-GPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGR 528
Query: 69 KRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVP 114
+ P +G GSP P G P A Q P PP P
Sbjct: 529 PGEAGLPGA----KGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGP 570
Score = 33.5 bits (75), Expect = 0.23
Identities = 30/108 (27%), Positives = 35/108 (32%), Gaps = 13/108 (12%)
Query: 18 PCECGGGAAEAGRGPRQRFQPPAAASLPRIGS--APPGGGRALRRGGRGAARRKRKRRAP 75
P + G A RGP PP A P PG + R G A+ R P
Sbjct: 982 PGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGP 1041
Query: 76 APVCHHRGSPGSPKFVSP-----------PRSPGSPAGAAQVPPPFPP 112
A G+PG+P V P P P P G P P
Sbjct: 1042 AGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGP 1089
Score = 32.3 bits (72), Expect = 0.52
Identities = 38/128 (29%), Positives = 43/128 (33%), Gaps = 23/128 (17%)
Query: 4 ADPLPPHGGRLRVGPCECGGGAAEAG----------RGPRQRFQPPAAASLPR----IGS 49
A P+ P G R GP G E G RG PP P G+
Sbjct: 1075 AGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGA 1134
Query: 50 APPGGGRALRRGGRGAARRKRKRRAPAPVCHH--RGSPGSPKFVSPPRSPGSPAGAAQVP 107
+ P G R G GA + P P+ RG G V PP PG P
Sbjct: 1135 SGPAGPRG-PPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPG------ 1187
Query: 108 PPFPPVPG 115
PP PP G
Sbjct: 1188 PPGPPSAG 1195
Score = 32.0 bits (71), Expect = 0.68
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 83 GSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVP 114
G+PG F PP PG P + + P PP P
Sbjct: 194 GAPGPQGFQGPPGEPGEPGASGPMGPRGPPGP 225
Score = 31.6 bits (70), Expect = 0.89
Identities = 28/101 (27%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 17 GPCECGGGAAEAGR----GPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAARRKRKR 72
GP G + G GP PP A P P G A +G G
Sbjct: 791 GPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEP---GDAGAKGDAGPPGPAGPA 847
Query: 73 RAPAPVCH--HRGSPGSPKFVSPPRSPGSPAGAAQVPPPFP 111
P P+ + G+ G+ PP + G P A +V PP P
Sbjct: 848 GPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGP 888
Score = 31.2 bits (69), Expect = 1.2
Identities = 34/114 (29%), Positives = 40/114 (35%), Gaps = 7/114 (6%)
Query: 6 PLPPHGGRLRVGPCECGGGAAEAG----RGPRQRFQPPAAASLPRIGSAPPGGGRALRRG 61
P P G R GP G +AG GP+ P A R PPG +
Sbjct: 555 PPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAG-ERGVPGPPGAVGPAGKD 613
Query: 62 GRGAARRKRKRRAPAPVCHHRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPG 115
G A+ PA +G GSP F P G P A + P VPG
Sbjct: 614 GEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGK--PGEQGVPG 665
Score = 29.3 bits (64), Expect = 4.4
Identities = 53/197 (26%), Positives = 61/197 (30%), Gaps = 32/197 (16%)
Query: 9 PHGGRLRVG-PCECGGGAAEAGRGPRQRFQPPA---------AASLPRIGSAPPGGGRAL 58
P G R G P E G GPR P A P AP G
Sbjct: 672 PSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPG 731
Query: 59 RRGGRGAARRKRKRRAPAPVCHHRGSPGSPKF---------VSPPRSPGSPAGAAQVPPP 109
RG G K R P +G+ GSP + PP G+P + P
Sbjct: 732 ERGAAGLPGPKGDRGDAGP----KGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPS 787
Query: 110 FPPVPGLHALLVCGQPRSREWTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAP 169
P P G P R PP + PP G+P A E +A A A
Sbjct: 788 GPAGP----TGARGAPGDRGEPG----PPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAG 839
Query: 170 SVWPHATRAAPSIPASN 186
P A A P P N
Sbjct: 840 PPGP-AGPAGPPGPIGN 855
Score = 28.1 bits (61), Expect = 9.9
Identities = 42/153 (27%), Positives = 53/153 (34%), Gaps = 23/153 (15%)
Query: 23 GGAAEAG-RGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAARRKRKRRAPAPVCHH 81
G EAG +GPR P P PPG G G A P
Sbjct: 350 GAKGEAGPQGPRGSEGPQGVRGEP----GPPGPA-----GAAGPAGNPGADGQPGA---- 396
Query: 82 RGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQPRSREWTERVQLP-PRG 140
+G+ G+P P PG+ + P PP P ++ G P S+ T P P G
Sbjct: 397 KGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNS-GEPGAPGSKGDTGAKGEPGPVG 455
Query: 141 RAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWP 173
PP P AG E A + P+ P
Sbjct: 456 VQGPPGP-------AGEEGKRGARGEPGPTGLP 481
>gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 42.0 bits (97), Expect = 7e-04
Identities = 48/174 (27%), Positives = 64/174 (36%), Gaps = 39/174 (22%)
Query: 11 GGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAARRKR 70
G R R GP + + E GP++ + S P +G+ P G L G + AA R
Sbjct: 149 GDRRRAGPEKRPKSSREGSGGPQESSRDKRPLSGPDVGTPQPAG---LASGAKLAAGRPF 205
Query: 71 KRRAPAPVCH-HRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQPRSRE 129
A H RG+ G P V+P G AG +P +S
Sbjct: 206 NTYPRADTDHPSRGAQGEPHDVAPN---GPSAGGLAIP------------------QSSS 244
Query: 130 WTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAPSIP 183
+ R PP G P GV A+ Q AP P T AAP++P
Sbjct: 245 SSSR-----------PPTRARGAPSPGVLGPHASEPQLAP---PACTPAAPAVP 284
>gi|62422557 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 42.0 bits (97), Expect = 7e-04
Identities = 48/174 (27%), Positives = 64/174 (36%), Gaps = 39/174 (22%)
Query: 11 GGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGGRALRRGGRGAARRKR 70
G R R GP + + E GP++ + S P +G+ P G L G + AA R
Sbjct: 149 GDRRRAGPEKRPKSSREGSGGPQESSRDKRPLSGPDVGTPQPAG---LASGAKLAAGRPF 205
Query: 71 KRRAPAPVCH-HRGSPGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQPRSRE 129
A H RG+ G P V+P G AG +P +S
Sbjct: 206 NTYPRADTDHPSRGAQGEPHDVAPN---GPSAGGLAIP------------------QSSS 244
Query: 130 WTERVQLPPRGRAWPPPPFTSGRPVAGVEAAEAAAAQRAPSVWPHATRAAPSIP 183
+ R PP G P GV A+ Q AP P T AAP++P
Sbjct: 245 SSSR-----------PPTRARGAPSPGVLGPHASEPQLAP---PACTPAAPAVP 284
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,903,853
Number of Sequences: 37866
Number of extensions: 1204571
Number of successful extensions: 13191
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 1288
Number of HSP's that attempted gapping in prelim test: 8381
Number of HSP's gapped (non-prelim): 4615
length of query: 300
length of database: 18,247,518
effective HSP length: 102
effective length of query: 198
effective length of database: 14,385,186
effective search space: 2848266828
effective search space used: 2848266828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.