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Search of human proteins with 239744787
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744787 PREDICTED: similar to CNOT4 protein, partial [Homo
sapiens]
(318 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744787 PREDICTED: similar to CNOT4 protein, partial [Homo ... 649 0.0
gi|239750488 PREDICTED: similar to CNOT4 protein, partial [Homo ... 642 0.0
gi|239755967 PREDICTED: similar to CNOT4 protein, partial [Homo ... 632 0.0
gi|56550057 CCR4-NOT transcription complex, subunit 4 isoform a ... 185 4e-47
gi|56550059 CCR4-NOT transcription complex, subunit 4 isoform b ... 185 4e-47
gi|45120119 microtubule associated serine/threonine kinase 1 [Ho... 35 0.11
gi|197276594 RNA binding motif protein 20 [Homo sapiens] 34 0.20
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 33 0.26
gi|169213703 PREDICTED: hypothetical protein [Homo sapiens] 33 0.44
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 33 0.44
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 33 0.44
gi|122937193 DNB5 [Homo sapiens] 33 0.44
gi|75677612 leucine rich repeat containing 37, member A3 [Homo s... 33 0.44
gi|239745855 PREDICTED: hypothetical protein XP_002343606 [Homo ... 32 0.57
gi|195947361 histidine acid phosphatase domain containing 2A iso... 32 0.57
gi|195947359 histidine acid phosphatase domain containing 2A iso... 32 0.57
gi|66932992 histidine acid phosphatase domain containing 2A isof... 32 0.57
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 32 0.75
gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo s... 32 0.75
gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo sa... 32 0.75
gi|148491082 disabled homolog 2 [Homo sapiens] 32 0.75
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 32 0.75
gi|238859651 pleckstrin homology domain containing family A memb... 32 0.97
gi|239740955 PREDICTED: similar to c114 SLIT-like testicular pro... 32 0.97
gi|239740953 PREDICTED: similar to c114 SLIT-like testicular pro... 32 0.97
gi|116325993 c114 SLIT-like testicular protein [Homo sapiens] 32 0.97
gi|110665701 leucine rich repeat containing 37A [Homo sapiens] 32 0.97
gi|31543140 Usher syndrome 1C binding protein 1 [Homo sapiens] 32 0.97
gi|56117846 synovial sarcoma translocation, chromosome 18 isofor... 31 1.3
gi|56117844 synovial sarcoma translocation, chromosome 18 isofor... 31 1.3
>gi|239744787 PREDICTED: similar to CNOT4 protein, partial [Homo
sapiens]
Length = 318
Score = 649 bits (1674), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 SRWHQIHTEETVLCPVNRKPCPEGSSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL 60
SRWHQIHTEETVLCPVNRKPCPEGSSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL
Sbjct: 1 SRWHQIHTEETVLCPVNRKPCPEGSSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL 60
Query: 61 SLVCVAGLSQCLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE 120
SLVCVAGLSQCLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE
Sbjct: 61 SLVCVAGLSQCLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE 120
Query: 121 QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRS 180
QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRS
Sbjct: 121 QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRS 180
Query: 181 SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF 240
SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF
Sbjct: 181 SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF 240
Query: 241 DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPPRPPQF 300
DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPPRPPQF
Sbjct: 241 DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPPRPPQF 300
Query: 301 QQHLTVYESFFFSRLGNS 318
QQHLTVYESFFFSRLGNS
Sbjct: 301 QQHLTVYESFFFSRLGNS 318
>gi|239750488 PREDICTED: similar to CNOT4 protein, partial [Homo
sapiens]
Length = 318
Score = 642 bits (1655), Expect = 0.0
Identities = 315/318 (99%), Positives = 316/318 (99%)
Query: 1 SRWHQIHTEETVLCPVNRKPCPEGSSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL 60
SRWHQIHTEETVLCPVNRKPCPEG SVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL
Sbjct: 1 SRWHQIHTEETVLCPVNRKPCPEGPSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL 60
Query: 61 SLVCVAGLSQCLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE 120
SLVCVAGLSQCLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE
Sbjct: 61 SLVCVAGLSQCLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE 120
Query: 121 QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRS 180
QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRS
Sbjct: 121 QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRS 180
Query: 181 SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF 240
SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF
Sbjct: 181 SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF 240
Query: 241 DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPPRPPQF 300
DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLP RPP+F
Sbjct: 241 DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPLRPPRF 300
Query: 301 QQHLTVYESFFFSRLGNS 318
QQHLTVYESFFFSRLGNS
Sbjct: 301 QQHLTVYESFFFSRLGNS 318
>gi|239755967 PREDICTED: similar to CNOT4 protein, partial [Homo
sapiens]
Length = 318
Score = 632 bits (1629), Expect = 0.0
Identities = 312/318 (98%), Positives = 312/318 (98%)
Query: 1 SRWHQIHTEETVLCPVNRKPCPEGSSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL 60
SRWHQIHTEETVLCPVNRKPCPEG SVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL
Sbjct: 1 SRWHQIHTEETVLCPVNRKPCPEGPSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKSCL 60
Query: 61 SLVCVAGLSQCLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE 120
SLVCVAGLSQ LADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE
Sbjct: 61 SLVCVAGLSQSLADPVVLKGPEYFGKLDEISRVAINSSTLCQNGRFTKEKSLAAEHQEYE 120
Query: 121 QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRS 180
QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSP TGLPKSSPVIPVRS
Sbjct: 121 QQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPSTGLPKSSPVIPVRS 180
Query: 181 SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF 240
SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF
Sbjct: 181 SGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVF 240
Query: 241 DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPPRPPQF 300
DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLP RPP F
Sbjct: 241 DAVWKALAGLTEMELPGQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPLRPPXF 300
Query: 301 QQHLTVYESFFFSRLGNS 318
QQHLTVYESFFFSRL NS
Sbjct: 301 QQHLTVYESFFFSRLSNS 318
>gi|56550057 CCR4-NOT transcription complex, subunit 4 isoform a
[Homo sapiens]
Length = 639
Score = 185 bits (470), Expect = 4e-47
Identities = 125/266 (46%), Positives = 141/266 (53%), Gaps = 59/266 (22%)
Query: 106 FTKEKSLAAEHQEYEQQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSP---------- 155
FTKE+ A +HQEYEQ+LLQE Y LNPN+L LS G D+NK ++ PLQSP
Sbjct: 223 FTKEEMQAGKHQEYEQKLLQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSI 282
Query: 156 -------TTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDN----- 203
SN D PSPP GL KS+PVIP+ SS HS + P EGA ESQ LF DN
Sbjct: 283 GNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPN 342
Query: 204 ---------PALPKHLLH-------QSLGTVILKPLD----------FGFSQQPEDVLGF 237
P+ P+ QSL T P+ FG S+QPED LGF
Sbjct: 343 PIPSGLPPFPSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGF 402
Query: 238 DVFDAVWKALAGLTEMELPG-----------QASSSHPTAALGPGSELQPPAAPTNAHSF 286
D FD KALA L E EL Q SSSH T A GPGS PAA TNA+S
Sbjct: 403 DPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSL 462
Query: 287 HSTPPVLPPRPPQFQQHLTVYESFFF 312
+ST VLP R PQFQQH VY SF F
Sbjct: 463 NSTFSVLPQRFPQFQQHRAVYNSFSF 488
Score = 100 bits (249), Expect = 2e-21
Identities = 56/107 (52%), Positives = 71/107 (66%), Gaps = 11/107 (10%)
Query: 3 WHQIHTEETVLCPVNRKPCPEGSSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKS---- 58
WH+I T+E LCP RKP PE +VY PLSQE LQ+IK+ + +++ RK QKIS++
Sbjct: 42 WHRIRTDENGLCPACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNERK-QKISENRKHL 100
Query: 59 ------CLSLVCVAGLSQCLADPVVLKGPEYFGKLDEISRVAINSST 99
+LV V GLSQ LADP VLK PEYFGK +I +V IN+ST
Sbjct: 101 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST 147
Score = 32.0 bits (71), Expect = 0.75
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 245 KALAGLTEMELPGQA-SSSHPTAALGPGSELQ-----PPAAPTNAHSFHSTPPVLPP--R 296
K+L LTEM+ P A S +H +A L P P+N SFHS PP R
Sbjct: 562 KSLQALTEMDGPSAAPSQTHHSAPFSTQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFR 621
Query: 297 PP 298
PP
Sbjct: 622 PP 623
>gi|56550059 CCR4-NOT transcription complex, subunit 4 isoform b
[Homo sapiens]
Length = 572
Score = 185 bits (470), Expect = 4e-47
Identities = 125/266 (46%), Positives = 141/266 (53%), Gaps = 59/266 (22%)
Query: 106 FTKEKSLAAEHQEYEQQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSP---------- 155
FTKE+ A +HQEYEQ+LLQE Y LNPN+L LS G D+NK ++ PLQSP
Sbjct: 223 FTKEEMQAGKHQEYEQKLLQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSI 282
Query: 156 -------TTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDN----- 203
SN D PSPP GL KS+PVIP+ SS HS + P EGA ESQ LF DN
Sbjct: 283 GNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPN 342
Query: 204 ---------PALPKHLLH-------QSLGTVILKPLD----------FGFSQQPEDVLGF 237
P+ P+ QSL T P+ FG S+QPED LGF
Sbjct: 343 PIPSGLPPFPSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGF 402
Query: 238 DVFDAVWKALAGLTEMELPG-----------QASSSHPTAALGPGSELQPPAAPTNAHSF 286
D FD KALA L E EL Q SSSH T A GPGS PAA TNA+S
Sbjct: 403 DPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSL 462
Query: 287 HSTPPVLPPRPPQFQQHLTVYESFFF 312
+ST VLP R PQFQQH VY SF F
Sbjct: 463 NSTFSVLPQRFPQFQQHRAVYNSFSF 488
Score = 100 bits (249), Expect = 2e-21
Identities = 56/107 (52%), Positives = 71/107 (66%), Gaps = 11/107 (10%)
Query: 3 WHQIHTEETVLCPVNRKPCPEGSSVYNPLSQEALQKIKDVRDRRRKSRKYQKISKS---- 58
WH+I T+E LCP RKP PE +VY PLSQE LQ+IK+ + +++ RK QKIS++
Sbjct: 42 WHRIRTDENGLCPACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNERK-QKISENRKHL 100
Query: 59 ------CLSLVCVAGLSQCLADPVVLKGPEYFGKLDEISRVAINSST 99
+LV V GLSQ LADP VLK PEYFGK +I +V IN+ST
Sbjct: 101 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST 147
>gi|45120119 microtubule associated serine/threonine kinase 1 [Homo
sapiens]
Length = 1570
Score = 34.7 bits (78), Expect = 0.11
Identities = 53/204 (25%), Positives = 71/204 (34%), Gaps = 17/204 (8%)
Query: 94 AINSSTLCQNGRFTKEKSLAAEHQEYEQQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQ 153
A SS + R K S + ++ L T N LH S L N+
Sbjct: 1064 ARRSSYKAKMARRNKRPSAKEGQESKKRSSLFRKITKQSNLLHTSRSLSSLNR------- 1116
Query: 154 SPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQ 213
S ++S+ SP GLP SP RS+ S L GA ++S P P
Sbjct: 1117 SLSSSDSLPGSPTHGLPARSPTHSYRSTPDSAYL---GASSQSSSPASSTPNSPASSASH 1173
Query: 214 SLGTVILKPLDFGFSQQPEDVLGFDVFDAVWKALAGLTEMELPGQASSSHPTAALGPGSE 273
+ L L +Q + L+ L P QAS P GS
Sbjct: 1174 HIRPSTLHGLSPKLHRQYRSARCKSAGNI---PLSPLAHTPSPTQASPP-PLPGHTVGSS 1229
Query: 274 LQPPAAPTNAHSFHSTPPVLPPRP 297
+ P HS+PPV+ PRP
Sbjct: 1230 HTTQSFPAK---LHSSPPVVRPRP 1250
>gi|197276594 RNA binding motif protein 20 [Homo sapiens]
Length = 1227
Score = 33.9 bits (76), Expect = 0.20
Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 21/169 (12%)
Query: 152 LQSPTTSNRDRPSPPTGLPK------------------SSPVIPVRSSGHSEQLPSEGAG 193
+Q P + P P GLP+ +P++P +S QL ++
Sbjct: 41 MQQPPPPPQPPPPPQAGLPQIIQNAAKLLDKNPFSVSNPNPLLPSPASLQLAQLQAQLTL 100
Query: 194 AESQLL--FLDNPALPKHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVFDAVWKALAGLT 251
+L + N +L+Q L V + F + P + G V + A +
Sbjct: 101 HRLKLAQTAVTNNTAAATVLNQVLSKVAMSQPLFNQLRHPSVITGPHGHAGVPQHAAAIP 160
Query: 252 EMELPGQASS-SHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPPRPPQ 299
P A + S P+ GPG + P P +A H V+P P Q
Sbjct: 161 STRFPSNAIAFSPPSQTRGPGPSMNLPNQPPSAMVMHPFTGVMPQTPGQ 209
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 33.5 bits (75), Expect = 0.26
Identities = 38/153 (24%), Positives = 50/153 (32%), Gaps = 31/153 (20%)
Query: 150 IPLQSPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALPKH 209
+P+ +P P PP P P+ P P QL L P +P
Sbjct: 212 LPVVAPPVPCAPPPPPPPPPPTPPPLPPASVLSDKAVKP--------QLAPLHLPPIPPP 263
Query: 210 LLHQSLGTVILKPLDF-GFSQQPEDVLGFDVFDAVWKALAGLTEMELPGQASSSHPTAAL 268
L +L P + G +P A E P P A+
Sbjct: 264 L-------PLLPPCGYPGLKAEP--------------ASPAQDAQEPPAPPPPLPPYASC 302
Query: 269 GPGSELQPPAAPTNAHSFHSTPPVLPPRPPQFQ 301
P + L P P +S TPP LPP+ P FQ
Sbjct: 303 SPRASLPAPPLP-GVNSSSETPPPLPPKSPSFQ 334
>gi|169213703 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 32.7 bits (73), Expect = 0.44
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 17/130 (13%)
Query: 168 GLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTVILKPLDFGF 227
G K + + P S H PS GA +P P+ LL +SLG + PLD GF
Sbjct: 35 GFVKFNLLPPGTGSSHLASAPSTGAST--------SPTRPR-LLPRSLGYPLRHPLDLGF 85
Query: 228 SQQPEDVLGFDVFDAVWKALAGLTEMELPGQA-SSSHPTAALGPGSELQPPAAPTNAHSF 286
Q P V + A A +++ P + +P AL S +PPA +A +F
Sbjct: 86 -QGPASVRPPST-PHLLSASALSAQLDSPARPHPRCYPPFAL---SAPRPPALGASATAF 140
Query: 287 HST--PPVLP 294
S+ PP P
Sbjct: 141 RSSSDPPARP 150
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 32.7 bits (73), Expect = 0.44
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 108 KEKSLAA------EHQEYEQQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRD 161
KE+ +AA E Y QQL QE T+ NY L D+ +Q P S + +
Sbjct: 972 KEEKIAALEARLEESTNYNQQLRQELKTVKKNYEALKQRQDEERMVQSSPPISGEDNKWE 1031
Query: 162 RPSPPTG---LPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTV 218
R S T L +I V + + Q + + + L N L +L TV
Sbjct: 1032 RESQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQAQILALQRQTV 1091
Query: 219 ILK 221
L+
Sbjct: 1092 SLQ 1094
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 32.7 bits (73), Expect = 0.44
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 108 KEKSLAA------EHQEYEQQLLQEFYTLNPNYLHLSMGLDDRNKIQMIPLQSPTTSNRD 161
KE+ +AA E Y QQL QE T+ NY L D+ +Q P S + +
Sbjct: 971 KEEKIAALEARLEESTNYNQQLRQELKTVKKNYEALKQRQDEERMVQSSPPISGEDNKWE 1030
Query: 162 RPSPPTG---LPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALPKHLLHQSLGTV 218
R S T L +I V + + Q + + + L N L +L TV
Sbjct: 1031 RESQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQAQILALQRQTV 1090
Query: 219 ILK 221
L+
Sbjct: 1091 SLQ 1093
>gi|122937193 DNB5 [Homo sapiens]
Length = 748
Score = 32.7 bits (73), Expect = 0.44
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 151 PLQSPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALPKH 209
PL+ P+ SP LP S PV+P G + LPS A S + +P PK+
Sbjct: 292 PLRPPSEKRAAMKSPSLPLPPSPPVLP--EEGPGDSLPSHTATNFSSPISPPSPLTPKY 348
>gi|75677612 leucine rich repeat containing 37, member A3 [Homo
sapiens]
Length = 1634
Score = 32.7 bits (73), Expect = 0.44
Identities = 43/175 (24%), Positives = 65/175 (37%), Gaps = 31/175 (17%)
Query: 148 QMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALP 207
Q QSP N + PSP T ++ G S E A +Q N +
Sbjct: 476 QETSFQSPEPINNENPSP-TQQEAAAEHPQTAEEGESSLTHQE---APAQTPEFPNVVVA 531
Query: 208 KHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVFDAV--------------WKALAGLTEM 253
+ H L ++PLD GF+ PE + ++ + + G+T
Sbjct: 532 QPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTN- 590
Query: 254 ELPGQASSSHPTA------ALGPGSELQPPAAPTNAHSFHSTPP---VLPPRPPQ 299
PGQ + HP + L G + P PT HSTPP ++ P+ P+
Sbjct: 591 PTPGQDQAQHPVSPSVTVQLLDLGLTITP--EPTTEVG-HSTPPKRTIVSPKHPE 642
>gi|239745855 PREDICTED: hypothetical protein XP_002343606 [Homo
sapiens]
Length = 870
Score = 32.3 bits (72), Expect = 0.57
Identities = 45/189 (23%), Positives = 63/189 (33%), Gaps = 36/189 (19%)
Query: 148 QMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALP 207
Q QSP N + PSP T ++ G S E A +Q N +
Sbjct: 476 QETSFQSPEPINNENPSP-TQQEAAAEHPQTAEEGESSLTHQE---APAQTPEFPNVVVA 531
Query: 208 KHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVFDAV--------------WKALAGLTEM 253
+ H L ++PLD GF+ PE + ++ + + G+T
Sbjct: 532 QPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTN- 590
Query: 254 ELPGQASSSHP--------------TAALGPGSELQPPAAPTNAHSFHSTPPVLPPRPPQ 299
PGQ + HP T P +E+ AP P V P P Q
Sbjct: 591 PTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTAPKRTIVSPKHPEVTLPHPDQ 650
Query: 300 FQ---QHLT 305
Q HLT
Sbjct: 651 VQTQHSHLT 659
>gi|195947361 histidine acid phosphatase domain containing 2A isoform
2 [Homo sapiens]
Length = 1408
Score = 32.3 bits (72), Expect = 0.57
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 154 SPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGA------ESQLLFLDNPALP 207
+P + R SPP L + S P SSG S + S G + SQ F D P+L
Sbjct: 1117 NPFSPPRTLHSPPLQLQQRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSQFGFSDQPSLN 1176
Query: 208 KHLL--HQSLG 216
H+ HQ LG
Sbjct: 1177 SHVAEEHQGLG 1187
>gi|195947359 histidine acid phosphatase domain containing 2A isoform
5 [Homo sapiens]
Length = 1433
Score = 32.3 bits (72), Expect = 0.57
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 154 SPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGA------ESQLLFLDNPALP 207
+P + R SPP L + S P SSG S + S G + SQ F D P+L
Sbjct: 1142 NPFSPPRTLHSPPLQLQQRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSQFGFSDQPSLN 1201
Query: 208 KHLL--HQSLG 216
H+ HQ LG
Sbjct: 1202 SHVAEEHQGLG 1212
>gi|66932992 histidine acid phosphatase domain containing 2A isoform 2
[Homo sapiens]
Length = 1408
Score = 32.3 bits (72), Expect = 0.57
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 154 SPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGA------ESQLLFLDNPALP 207
+P + R SPP L + S P SSG S + S G + SQ F D P+L
Sbjct: 1117 NPFSPPRTLHSPPLQLQQRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSQFGFSDQPSLN 1176
Query: 208 KHLL--HQSLG 216
H+ HQ LG
Sbjct: 1177 SHVAEEHQGLG 1187
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
sapiens]
Length = 1341
Score = 32.0 bits (71), Expect = 0.75
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 22/110 (20%)
Query: 102 QNGRFTKEKSLAAEHQEYEQQLLQEFYTLNP-----NYLHLSMGL-------------DD 143
+ GRFT+ + A + QQ +E T +P + S GL +D
Sbjct: 336 RGGRFTRSQEEARKSHLARQQQEKEMKTTSPLEEEEREIKSSQGLKEKSKSPSPPRLTED 395
Query: 144 RNKIQMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQ--LPSEG 191
R K ++ L T S + P P SSP P HSE+ P EG
Sbjct: 396 RKKASLVALPEQTASEEETPPPLLTKEASSP--PPHPQLHSEEEIEPMEG 443
>gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo
sapiens]
Length = 1235
Score = 32.0 bits (71), Expect = 0.75
Identities = 47/170 (27%), Positives = 63/170 (37%), Gaps = 25/170 (14%)
Query: 151 PLQSPTTSNRDR-PSPPTGLPK--SSPVIPVRSSGHSEQLPSEGA---GAESQLLFLDNP 204
P+ P T + R PSP L + +P P S Q P E + Q+ P
Sbjct: 305 PIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRP 364
Query: 205 ALPKHLLHQSLGTVILKPLDFGFSQQ----PEDVLGFDVFDAVWKALAGLTEMELPGQAS 260
P LLHQ+L V P SQ L + + + T+ P
Sbjct: 365 QSPTQLLHQNLPPVQAHPSAQSLSQPLSAYNSSSLSLNSLSSSRSSTPAKTQPAPPH--I 422
Query: 261 SSHPTAALGPGS------------ELQPPAAPTNAHSFHSTPPVLPPRPP 298
S HP+A+ P S LQPPA + + F + P LPP PP
Sbjct: 423 SHHPSASPFPLSLPNHSPLHSFTPTLQPPAHSHHPNMF-APPTALPPPPP 471
>gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo
sapiens]
Length = 1259
Score = 32.0 bits (71), Expect = 0.75
Identities = 47/170 (27%), Positives = 63/170 (37%), Gaps = 25/170 (14%)
Query: 151 PLQSPTTSNRDR-PSPPTGLPK--SSPVIPVRSSGHSEQLPSEGA---GAESQLLFLDNP 204
P+ P T + R PSP L + +P P S Q P E + Q+ P
Sbjct: 305 PIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRP 364
Query: 205 ALPKHLLHQSLGTVILKPLDFGFSQQ----PEDVLGFDVFDAVWKALAGLTEMELPGQAS 260
P LLHQ+L V P SQ L + + + T+ P
Sbjct: 365 QSPTQLLHQNLPPVQAHPSAQSLSQPLSAYNSSSLSLNSLSSSRSSTPAKTQPAPPH--I 422
Query: 261 SSHPTAALGPGS------------ELQPPAAPTNAHSFHSTPPVLPPRPP 298
S HP+A+ P S LQPPA + + F + P LPP PP
Sbjct: 423 SHHPSASPFPLSLPNHSPLHSFTPTLQPPAHSHHPNMF-APPTALPPPPP 471
>gi|148491082 disabled homolog 2 [Homo sapiens]
Length = 770
Score = 32.0 bits (71), Expect = 0.75
Identities = 39/157 (24%), Positives = 56/157 (35%), Gaps = 16/157 (10%)
Query: 154 SPTTSNRDRPSPPTGLPKSSPVIPVRS----SGHSEQLPSEGAGAESQLLFLDNPALPKH 209
SPT P L K+S PV G + LP G + L+F +P++
Sbjct: 471 SPTGQPTALQPNPLDLFKTSAPAPVGPLVGLGGVTVTLPQAGPWNTASLVFNQSPSMAPG 530
Query: 210 LLHQSLGTVILKPLDFGFS------QQPEDVLGFDV--FDAVWKALAGLTEMELPGQASS 261
+ + +P+ FG S QP VW A + P S+
Sbjct: 531 AMMGGQPSGFSQPVIFGTSPAVSGWNQPSPFAASTPPPVPVVWGPSASVA----PNAWST 586
Query: 262 SHPTAALGPGSELQPPAAPTNAHSFHSTPPVLPPRPP 298
+ P + PA T S HS+ V PP+PP
Sbjct: 587 TSPLGNPFQSNIFPAPAVSTQPPSMHSSLLVTPPQPP 623
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 32.0 bits (71), Expect = 0.75
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 249 GLTEMELP--GQASSSHPTAALGPGSELQPPAAPTNAHSFHSTPPV-LPPRPPQF 300
G+++M+L G HP A PGS QPP P PP+ +PPR P F
Sbjct: 305 GMSQMQLAHHGPHGLGHPHAG-PPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPF 358
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 31.6 bits (70), Expect = 0.97
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 258 QASSSHPTAALGPGSEL---QPPAAP--------TNAHSFHSTPPVLPPRPP 298
Q S PT GP SE +PP +P T AHS T LPPRPP
Sbjct: 289 QTLSRPPTPRRGPPSEAGGGKPPRSPQHWSQEPRTQAHSGSPTYLQLPPRPP 340
>gi|239740955 PREDICTED: similar to c114 SLIT-like testicular
protein isoform 1 [Homo sapiens]
Length = 1635
Score = 31.6 bits (70), Expect = 0.97
Identities = 43/175 (24%), Positives = 64/175 (36%), Gaps = 31/175 (17%)
Query: 148 QMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALP 207
Q QSP N + PSP T ++ G S E A +Q N +
Sbjct: 476 QETSFQSPEPINNENPSP-TQQEAAAEHPQTAEEGESSLTHQE---APAQTPEFPNVVVA 531
Query: 208 KHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVFDAV--------------WKALAGLTEM 253
+ H L ++PLD GF+ PE ++ + + G+T
Sbjct: 532 QPPEHSHLTQATVQPLDLGFTITPESKTEVELSPTMKETPTQPPKKVVPQLRVYQGVTN- 590
Query: 254 ELPGQASSSHPTA------ALGPGSELQPPAAPTNAHSFHSTPP---VLPPRPPQ 299
PGQ + HP + L G + P PT HSTPP ++ P+ P+
Sbjct: 591 PTPGQDQAQHPVSPSVTVQLLDLGLTITP--EPTTEVG-HSTPPKRTIVSPKHPE 642
>gi|239740953 PREDICTED: similar to c114 SLIT-like testicular
protein isoform 2 [Homo sapiens]
Length = 1700
Score = 31.6 bits (70), Expect = 0.97
Identities = 43/175 (24%), Positives = 64/175 (36%), Gaps = 31/175 (17%)
Query: 148 QMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALP 207
Q QSP N + PSP T ++ G S E A +Q N +
Sbjct: 476 QETSFQSPEPINNENPSP-TQQEAAAEHPQTAEEGESSLTHQE---APAQTPEFPNVVVA 531
Query: 208 KHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVFDAV--------------WKALAGLTEM 253
+ H L ++PLD GF+ PE ++ + + G+T
Sbjct: 532 QPPEHSHLTQATVQPLDLGFTITPESKTEVELSPTMKETPTQPPKKVVPQLRVYQGVTN- 590
Query: 254 ELPGQASSSHPTA------ALGPGSELQPPAAPTNAHSFHSTPP---VLPPRPPQ 299
PGQ + HP + L G + P PT HSTPP ++ P+ P+
Sbjct: 591 PTPGQDQAQHPVSPSVTVQLLDLGLTITP--EPTTEVG-HSTPPKRTIVSPKHPE 642
>gi|116325993 c114 SLIT-like testicular protein [Homo sapiens]
Length = 1700
Score = 31.6 bits (70), Expect = 0.97
Identities = 43/175 (24%), Positives = 64/175 (36%), Gaps = 31/175 (17%)
Query: 148 QMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALP 207
Q QSP N + PSP T ++ G S E A +Q N +
Sbjct: 476 QETSFQSPEPINNENPSP-TQQEAAAEHPQTAEEGESSLTHQE---APAQTPEFPNVVVA 531
Query: 208 KHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVFDAV--------------WKALAGLTEM 253
+ H L ++PLD GF+ PE ++ + + G+T
Sbjct: 532 QPPEHSHLTQATVQPLDLGFTITPESKTEVELSPTMKETPTQPPKKVVPQLRVYQGVTN- 590
Query: 254 ELPGQASSSHPTA------ALGPGSELQPPAAPTNAHSFHSTPP---VLPPRPPQ 299
PGQ + HP + L G + P PT HSTPP ++ P+ P+
Sbjct: 591 PTPGQDQAQHPVSPSVTVQLLDLGLTITP--EPTTEVG-HSTPPKRTIVSPKHPE 642
Score = 29.3 bits (64), Expect = 4.8
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 212 HQSLGTVILKPLDFGFSQQPEDVLGFDVFDAVWKAL--AGLTEMELP----GQASSSHPT 265
H L ++PLD GF+ P+ + + A+ G E+ LP GQA SH T
Sbjct: 655 HSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLT 714
Query: 266 AA------------LGPGSELQPPAAPTNAHSFHSTPPV---LPPRPPQFQQHLTVYE 308
A P +E++P +PT + P + + P P +H T E
Sbjct: 715 QATVQPLDLELTITTKPTTEVKP--SPTTEETSTQPPDLGLAIIPEPTTETRHSTALE 770
>gi|110665701 leucine rich repeat containing 37A [Homo sapiens]
Length = 1700
Score = 31.6 bits (70), Expect = 0.97
Identities = 43/175 (24%), Positives = 64/175 (36%), Gaps = 31/175 (17%)
Query: 148 QMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAGAESQLLFLDNPALP 207
Q QSP N + PSP T ++ G S E A +Q N +
Sbjct: 476 QETSFQSPEPINNENPSP-TQQEAAAEHPQTAEEGESSLTHQE---APAQTPEFPNVVVA 531
Query: 208 KHLLHQSLGTVILKPLDFGFSQQPEDVLGFDVFDAV--------------WKALAGLTEM 253
+ H L ++PLD GF+ PE ++ + + G+T
Sbjct: 532 QPPEHSHLTQATVQPLDLGFTITPESKTEVELSPTMKETPTQPPKKVVPQLRVYQGVTN- 590
Query: 254 ELPGQASSSHPTA------ALGPGSELQPPAAPTNAHSFHSTPP---VLPPRPPQ 299
PGQ + HP + L G + P PT HSTPP ++ P+ P+
Sbjct: 591 PTPGQDQAQHPVSPSVTVQLLDLGLTITP--EPTTEVG-HSTPPKRTIVSPKHPE 642
>gi|31543140 Usher syndrome 1C binding protein 1 [Homo sapiens]
Length = 703
Score = 31.6 bits (70), Expect = 0.97
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 3 WHQIHTEETVL---CPVNRKPCPEGSSVYNPLSQEALQKIKDVRDRRRKSRKYQKI 55
W + EE + N +P PEGSSV P QE +++ R ++ R KI
Sbjct: 386 WRLLAQEEAAMDAGAQQNPQPSPEGSSVDKPTPQEVAFQLRSYVQRLQERRSLMKI 441
>gi|56117846 synovial sarcoma translocation, chromosome 18 isoform 1
[Homo sapiens]
Length = 418
Score = 31.2 bits (69), Expect = 1.3
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 76 VVLKGPEYFGKLDEISRVAI-----NSSTLCQNGRFTKEKSLAAEHQEYEQQLLQEFYTL 130
V P GK EI+ AI +++ L Q ++ K +E +Y+Q L
Sbjct: 3 VAFAAPRQRGK-GEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQML------- 54
Query: 131 NPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSE 190
+ N ++L+ D +Q + L +P T N P P G+ +S P P R S +PS+
Sbjct: 55 HTNLVYLATIADSNQNMQSL-LPAPPTQNM--PMGPGGMNQSGPPPPPR----SHNMPSD 107
Query: 191 G 191
G
Sbjct: 108 G 108
>gi|56117844 synovial sarcoma translocation, chromosome 18 isoform 2
[Homo sapiens]
Length = 387
Score = 31.2 bits (69), Expect = 1.3
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 76 VVLKGPEYFGKLDEISRVAI-----NSSTLCQNGRFTKEKSLAAEHQEYEQQLLQEFYTL 130
V P GK EI+ AI +++ L Q ++ K +E +Y+Q L
Sbjct: 3 VAFAAPRQRGK-GEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQML------- 54
Query: 131 NPNYLHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSE 190
+ N ++L+ D +Q + L +P T N P P G+ +S P P R S +PS+
Sbjct: 55 HTNLVYLATIADSNQNMQSL-LPAPPTQNM--PMGPGGMNQSGPPPPPR----SHNMPSD 107
Query: 191 G 191
G
Sbjct: 108 G 108
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,898,027
Number of Sequences: 37866
Number of extensions: 779781
Number of successful extensions: 5457
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 5234
Number of HSP's gapped (non-prelim): 351
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.