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Search of human proteins with 11641237
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11641237 RAB38 [Homo sapiens]
(211 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11641237 RAB38 [Homo sapiens] 435 e-122
gi|5803133 RAB32, member RAS oncogene family [Homo sapiens] 278 2e-75
gi|208609962 RAB7, member RAS oncogene family-like 1 isoform 1 [... 213 7e-56
gi|4506375 RAB7, member RAS oncogene family-like 1 isoform 1 [Ho... 213 7e-56
gi|208609964 RAB7, member RAS oncogene family-like 1 isoform 2 [... 164 7e-41
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 134 7e-32
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 132 2e-31
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 131 4e-31
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 131 4e-31
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 131 4e-31
gi|34147513 RAB7, member RAS oncogene family [Homo sapiens] 125 3e-29
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 125 3e-29
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 123 1e-28
gi|16933567 mel transforming oncogene [Homo sapiens] 120 6e-28
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 119 2e-27
gi|208609966 RAB7, member RAS oncogene family-like 1 isoform 3 [... 117 7e-27
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens] 117 9e-27
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 117 9e-27
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 115 3e-26
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 113 1e-25
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 113 1e-25
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 112 2e-25
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 112 3e-25
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 111 5e-25
gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens] 110 7e-25
gi|50234889 RAB43 protein [Homo sapiens] 108 3e-24
gi|19923483 GTPase Rab14 [Homo sapiens] 107 6e-24
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 107 7e-24
gi|4759012 RAB9A, member RAS oncogene family [Homo sapiens] 107 1e-23
gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens] 107 1e-23
>gi|11641237 RAB38 [Homo sapiens]
Length = 211
Score = 435 bits (1119), Expect = e-122
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MQAPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVR 60
MQAPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVR
Sbjct: 1 MQAPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVR 60
Query: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPV 120
LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPV
Sbjct: 61 LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPV 120
Query: 121 SVVLLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILAN 180
SVVLLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILAN
Sbjct: 121 SVVLLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILAN 180
Query: 181 ECDLMESIEPDVVKPHLTSTKVASCSGCAKS 211
ECDLMESIEPDVVKPHLTSTKVASCSGCAKS
Sbjct: 181 ECDLMESIEPDVVKPHLTSTKVASCSGCAKS 211
>gi|5803133 RAB32, member RAS oncogene family [Homo sapiens]
Length = 225
Score = 278 bits (711), Expect = 2e-75
Identities = 132/175 (75%), Positives = 154/175 (88%), Gaps = 1/175 (0%)
Query: 6 KEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWD 65
+EHL+K+LVIG+LGVGKTSIIKRYVHQ FS HYRATIGVDFALKVL+WD T+VRLQLWD
Sbjct: 22 REHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWD 81
Query: 66 IAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLL 125
IAGQERFGNMTRVYY+EA+GAF+VFD++R +TFEAV KWK+DLDSK+ LPNG P+ VLL
Sbjct: 82 IAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLL 141
Query: 126 ANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILAN 180
ANKCDQ KD + ++DQFCKEHGF GWFETSAK+NINI+EA+R LV+ IL N
Sbjct: 142 ANKCDQNKDSSQSPS-QVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVN 195
>gi|208609962 RAB7, member RAS oncogene family-like 1 isoform 1
[Homo sapiens]
Length = 203
Score = 213 bits (543), Expect = 7e-56
Identities = 105/202 (51%), Positives = 142/202 (70%), Gaps = 4/202 (1%)
Query: 6 KEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWD 65
++HL+K+LV+GD VGKTS+++RY +FS HY++T+GVDFALKVL W +VRLQLWD
Sbjct: 4 RDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWD 63
Query: 66 IAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLL 125
IAGQERF +MTR+YYR+A I+FDVT TF +WK DLDSKL+LPNG+PV +LL
Sbjct: 64 IAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLL 123
Query: 126 ANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANEC-DL 184
ANKCD + + ++D+F KE+GF GW ETS KEN NI+EA R L++ ++ N D+
Sbjct: 124 ANKCDLSPWAVSRD--QIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDI 181
Query: 185 ME-SIEPDVVKPHLTSTKVASC 205
M S + D + S+ + C
Sbjct: 182 MSLSTQGDYINLQTKSSSWSCC 203
>gi|4506375 RAB7, member RAS oncogene family-like 1 isoform 1 [Homo
sapiens]
Length = 203
Score = 213 bits (543), Expect = 7e-56
Identities = 105/202 (51%), Positives = 142/202 (70%), Gaps = 4/202 (1%)
Query: 6 KEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWD 65
++HL+K+LV+GD VGKTS+++RY +FS HY++T+GVDFALKVL W +VRLQLWD
Sbjct: 4 RDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWD 63
Query: 66 IAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLL 125
IAGQERF +MTR+YYR+A I+FDVT TF +WK DLDSKL+LPNG+PV +LL
Sbjct: 64 IAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLL 123
Query: 126 ANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANEC-DL 184
ANKCD + + ++D+F KE+GF GW ETS KEN NI+EA R L++ ++ N D+
Sbjct: 124 ANKCDLSPWAVSRD--QIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDI 181
Query: 185 ME-SIEPDVVKPHLTSTKVASC 205
M S + D + S+ + C
Sbjct: 182 MSLSTQGDYINLQTKSSSWSCC 203
>gi|208609964 RAB7, member RAS oncogene family-like 1 isoform 2
[Homo sapiens]
Length = 179
Score = 164 bits (414), Expect = 7e-41
Identities = 87/202 (43%), Positives = 123/202 (60%), Gaps = 28/202 (13%)
Query: 6 KEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWD 65
++HL+K+LV+GD VGKTS+++RY +FS HY++T+G
Sbjct: 4 RDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG---------------------- 41
Query: 66 IAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLL 125
GQERF +MTR+YYR+A I+FDVT TF +WK DLDSKL+LPNG+PV +LL
Sbjct: 42 --GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLL 99
Query: 126 ANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANEC-DL 184
ANKCD + + ++D+F KE+GF GW ETS KEN NI+EA R L++ ++ N D+
Sbjct: 100 ANKCDLSPWAVSRD--QIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDI 157
Query: 185 ME-SIEPDVVKPHLTSTKVASC 205
M S + D + S+ + C
Sbjct: 158 MSLSTQGDYINLQTKSSSWSCC 179
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 134 bits (336), Expect = 7e-32
Identities = 72/173 (41%), Positives = 108/173 (62%), Gaps = 9/173 (5%)
Query: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
+HL+KLL+IGD GVGKT +I R+ NF++ Y +TIG+DF ++ + + + + +LQ+WD
Sbjct: 6 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKI-KLQVWDT 64
Query: 67 AGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLA 126
AGQERF +T YYR AMG +V+D+T +FE + W + S V +LL
Sbjct: 65 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS----AGVERLLLG 120
Query: 127 NKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHIL 178
NKCD + K + + D+ +EHG + +FETSAK ++N+DEA L + IL
Sbjct: 121 NKCDMEAKRKVQKE--QADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDIL 170
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 132 bits (332), Expect = 2e-31
Identities = 72/170 (42%), Positives = 108/170 (63%), Gaps = 7/170 (4%)
Query: 9 LYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAG 68
L+KLL+IGD GVGKT ++ R+ F++ + +TIG+DF +K + + + +LQ+WD AG
Sbjct: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKI-KLQIWDTAG 67
Query: 69 QERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANK 128
QERF +T YYR AMG +V+D+T +FE ++KW ++D + + V +LL NK
Sbjct: 68 QERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHAN----EDVERMLLGNK 123
Query: 129 CDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHIL 178
CD ++ G K Q +EHG + +FETSAK NINI++A L + IL
Sbjct: 124 CDMDDKRVVPKG-KGGQIAREHG-IRFFETSAKANINIEKAFLTLAEDIL 171
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 131 bits (330), Expect = 4e-31
Identities = 71/173 (41%), Positives = 107/173 (61%), Gaps = 9/173 (5%)
Query: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
+HL+KLL+IGD GVGKT +I R+ NF++ Y +TIG+DF ++ + + + + +LQ+WD
Sbjct: 130 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKI-KLQVWDT 188
Query: 67 AGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLA 126
AGQERF +T YYR AMG + +D+T +FE + W + S V +LL
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENAS----AGVEHLLLG 244
Query: 127 NKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHIL 178
NKCD + K + + D+ +EHG + +FETSAK ++N+DEA L + IL
Sbjct: 245 NKCDMEAKRKVQKE--QADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDIL 294
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 131 bits (330), Expect = 4e-31
Identities = 71/173 (41%), Positives = 107/173 (61%), Gaps = 9/173 (5%)
Query: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
+HL+KLL+IGD GVGKT +I R+ NF++ Y +TIG+DF ++ + + + + +LQ+WD
Sbjct: 130 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKI-KLQVWDT 188
Query: 67 AGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLA 126
AGQERF +T YYR AMG + +D+T +FE + W + S V +LL
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENAS----AGVEHLLLG 244
Query: 127 NKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHIL 178
NKCD + K + + D+ +EHG + +FETSAK ++N+DEA L + IL
Sbjct: 245 NKCDMEAKRKVQKE--QADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDIL 294
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 131 bits (330), Expect = 4e-31
Identities = 71/173 (41%), Positives = 107/173 (61%), Gaps = 9/173 (5%)
Query: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
+HL+KLL+IGD GVGKT +I R+ NF++ Y +TIG+DF ++ + + + + +LQ+WD
Sbjct: 130 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKI-KLQVWDT 188
Query: 67 AGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLA 126
AGQERF +T YYR AMG + +D+T +FE + W + S V +LL
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENAS----AGVEHLLLG 244
Query: 127 NKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHIL 178
NKCD + K + + D+ +EHG + +FETSAK ++N+DEA L + IL
Sbjct: 245 NKCDMEAKRKVQKE--QADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDIL 294
>gi|34147513 RAB7, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 125 bits (314), Expect = 3e-29
Identities = 71/206 (34%), Positives = 121/206 (58%), Gaps = 6/206 (2%)
Query: 6 KEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWD 65
K+ L K++++GD GVGKTS++ +YV++ FS+ Y+ATIG DF K + D + +V +Q+WD
Sbjct: 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWD 63
Query: 66 IAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLL 125
AGQERF ++ +YR A +VFDVT P TF+ + W+++ + S + + V+L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 126 ANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDL 184
NK D + + V + +C + +FETSAKE IN+++A + + ++ L E ++
Sbjct: 124 GNKIDLENRQVATK---RAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 185 -MESIEPDVVKPHLTSTKVASCSGCA 209
+ + P+ +K AS C+
Sbjct: 181 ELYNEFPEPIKLDKNDRAKASAESCS 206
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 125 bits (313), Expect = 3e-29
Identities = 77/205 (37%), Positives = 116/205 (56%), Gaps = 16/205 (7%)
Query: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
+HL+KLL+IGD GVGK+S++ R+ FS Y TIGVDF ++ + + E V+LQ+WD
Sbjct: 6 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEK-VKLQIWDT 64
Query: 67 AGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLA 126
AGQERF +T YYR G +V+DVT +F V +W ++++ N V +L+
Sbjct: 65 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-----NCDDVCRILVG 119
Query: 127 NKCD--QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDL 184
NK D + K V + K F + G + FETSAKEN+N++E C+ + +L + D
Sbjct: 120 NKNDDPERKVVETEDAYK---FAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKKDN 175
Query: 185 M----ESIEPDVVKPHLTSTKVASC 205
+ + + DVVK S + C
Sbjct: 176 LAKQQQQQQNDVVKLTKNSKRKKRC 200
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 123 bits (309), Expect = 1e-28
Identities = 74/196 (37%), Positives = 117/196 (59%), Gaps = 15/196 (7%)
Query: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
++++KLL+IG+ VGKTS + RY +F+S + +T+G+DF +K + + E ++LQ+WD
Sbjct: 28 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-FKNEKRIKLQIWDT 86
Query: 67 AGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLA 126
AGQER+ +T YYR AMG +++D+T +F AV W + + S N + V+L+
Sbjct: 87 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT-YSWDNAQ---VILVG 142
Query: 127 NKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDLM- 185
NKCD + +++ + Q E +FETSAK+NIN+ + LV I CD M
Sbjct: 143 NKCDMEDERVIST--ERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDII----CDKMS 196
Query: 186 ESIEPDVVKPHLTSTK 201
ES+E D P +T+ K
Sbjct: 197 ESLETD---PAITAAK 209
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 120 bits (302), Expect = 6e-28
Identities = 68/186 (36%), Positives = 108/186 (58%), Gaps = 11/186 (5%)
Query: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
++L+KLL+IGD GVGKT ++ R+ F+S + +TIG+DF ++ + D + + +LQ+WD
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-KLQIWDT 64
Query: 67 AGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLA 126
AGQERF +T YYR AMG +V+D+T +F+ + W +++ S V ++L
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS----ADVEKMILG 120
Query: 127 NKCD--QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDL 184
NKCD + V G K+ ++G + + ETSAK NIN++ A L + I A
Sbjct: 121 NKCDVNDKRQVSKERGEKL---ALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKK 176
Query: 185 MESIEP 190
+E P
Sbjct: 177 LEGNSP 182
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 119 bits (298), Expect = 2e-27
Identities = 69/207 (33%), Positives = 118/207 (57%), Gaps = 11/207 (5%)
Query: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
++++K+L+IG+ VGKTS + RY +F+ + +T+G+DF +K ++ + + + +LQ+WD
Sbjct: 20 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRI-KLQIWDT 78
Query: 67 AGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLA 126
AGQER+ +T YYR AMG +++D+T +F AV W + + S N + V+L+
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT-YSWDNAQ---VLLVG 134
Query: 127 NKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDLME 186
NKCD +D + + + Q GF +FE SAK+NIN+ + LV I + ++
Sbjct: 135 NKCDM-EDERVVSSERGRQLADHLGF-EFFEASAKDNINVKQTFERLVDVICEKMSESLD 192
Query: 187 SIEPDVV----KPHLTSTKVASCSGCA 209
+ +P V P L+ +V CA
Sbjct: 193 TADPAVTGAKQGPQLSDQQVPPHQDCA 219
>gi|208609966 RAB7, member RAS oncogene family-like 1 isoform 3
[Homo sapiens]
Length = 131
Score = 117 bits (293), Expect = 7e-27
Identities = 62/133 (46%), Positives = 85/133 (63%), Gaps = 4/133 (3%)
Query: 75 MTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKCDQGKD 134
MTR+YYR+A I+FDVT TF +WK DLDSKL+LPNG+PV +LLANKCD
Sbjct: 1 MTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCDLSPW 60
Query: 135 VLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANEC-DLME-SIEPDV 192
+ + ++D+F KE+GF GW ETS KEN NI+EA R L++ ++ N D+M S + D
Sbjct: 61 AVSRD--QIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDIMSLSTQGDY 118
Query: 193 VKPHLTSTKVASC 205
+ S+ + C
Sbjct: 119 INLQTKSSSWSCC 131
>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 117 bits (292), Expect = 9e-27
Identities = 69/186 (37%), Positives = 110/186 (59%), Gaps = 12/186 (6%)
Query: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
++++KLL+IG+ VGKTS + RY F+ + +T+G+DF +K ++ E V+LQ+WD
Sbjct: 20 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH-EKRVKLQIWDT 78
Query: 67 AGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLA 126
AGQER+ +T YYR AMG +++D+T +F AV W + + S N + V+L+
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT-YSWDNAQ---VILVG 134
Query: 127 NKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDLM- 185
NKCD ++ ++ + Q E +FE SAKENI++ +A LV I CD M
Sbjct: 135 NKCDMEEERVVPT--EKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI----CDKMS 188
Query: 186 ESIEPD 191
+S++ D
Sbjct: 189 DSLDTD 194
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 117 bits (292), Expect = 9e-27
Identities = 63/174 (36%), Positives = 105/174 (60%), Gaps = 11/174 (6%)
Query: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
++L+KLL+IGD GVGKT ++ R+ F++ + +TIG+DF ++ + D + + +LQ+WD
Sbjct: 6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKI-KLQIWDT 64
Query: 67 AGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLA 126
AGQERF +T YYR AMG +V+D+T +F+ + W +++ S V ++L
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS----SDVERMILG 120
Query: 127 NKCDQG--KDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHIL 178
NKCD + V G K+ ++G + + ETSAK + N++EA L + I+
Sbjct: 121 NKCDMNDKRQVSKERGEKL---AIDYG-IKFLETSAKSSANVEEAFFTLARDIM 170
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 115 bits (288), Expect = 3e-26
Identities = 63/175 (36%), Positives = 109/175 (62%), Gaps = 10/175 (5%)
Query: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
++L+K+++IGD VGKT +++ + ++ + TIGVDF ++ L D + V ++Q+WD
Sbjct: 15 DYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKV-KMQVWDT 73
Query: 67 AGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLA 126
AGQERF +T+ YYR A A I +D+TR +TFE++ W ++++ K N V ++L+
Sbjct: 74 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIE-KYGAAN---VVIMLIG 129
Query: 127 NKCD--QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
NKCD + + VL + + +++G + ETSAKE+ NI+E + K ++A
Sbjct: 130 NKCDLWEKRHVLFEDACTL---AEKYGLLAVLETSAKESKNIEEVFVLMAKELIA 181
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 113 bits (283), Expect = 1e-25
Identities = 65/175 (37%), Positives = 103/175 (58%), Gaps = 9/175 (5%)
Query: 4 PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQL 63
P ++L+KLL+IGD GVGK+ ++ R+ ++ Y +TIGVDF ++ + D +T+ +LQ+
Sbjct: 6 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KLQI 64
Query: 64 WDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVV 123
WD AGQERF +T YYR A G +V+DVT +F V +W ++D S + V+ +
Sbjct: 65 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKL 120
Query: 124 LLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHI 177
L+ NKCD K V+ K +F G + + ETSAK N++++ + I
Sbjct: 121 LVGNKCDLTTKKVVDYTTAK--EFADSLG-IPFLETSAKNATNVEQSFMTMAAEI 172
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 113 bits (283), Expect = 1e-25
Identities = 60/170 (35%), Positives = 101/170 (59%), Gaps = 10/170 (5%)
Query: 11 KLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQE 70
++++IG GVGKTS+++R+ F ++T+GVDF +K + + + RLQ+WD AGQE
Sbjct: 44 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI-RLQIWDTAGQE 102
Query: 71 RFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANK-- 128
RF ++T YYR A G +V+D+T+ TF+ + KW +D S + ++L+ NK
Sbjct: 103 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLD 158
Query: 129 CDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHIL 178
C+ +++ G ++F ++ + + E SAK+N N+DE LV IL
Sbjct: 159 CETDREITRQQG---EKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 205
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 112 bits (280), Expect = 2e-25
Identities = 65/175 (37%), Positives = 103/175 (58%), Gaps = 9/175 (5%)
Query: 4 PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQL 63
P ++L+KLL+IGD GVGK+ ++ R+ ++ Y +TIGVDF ++ + D +T+ +LQ+
Sbjct: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KLQI 61
Query: 64 WDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVV 123
WD AGQERF +T YYR A G +V+DVT ++ V +W ++D S + V+ +
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKL 117
Query: 124 LLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHI 177
L+ NK D K V+ N K +F G + + ETSAK N+++A + I
Sbjct: 118 LVGNKSDLTTKKVVDNTTAK--EFADSLG-IPFLETSAKNATNVEQAFMTMAAEI 169
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 112 bits (279), Expect = 3e-25
Identities = 69/187 (36%), Positives = 111/187 (59%), Gaps = 16/187 (8%)
Query: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
++++KLL+IG+ VGKTS + RY +F+ + +T+G+DF +K ++ + + +LQ+WD
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRI-KLQIWDT 78
Query: 67 AGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLA 126
AGQER+ +T YYR AMG +++D+ +F AV W + + S N + V+L+
Sbjct: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT-YSWDNAQ---VILVG 134
Query: 127 NKCD--QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDL 184
NKCD + V +G ++ + GF +FE SAKENIN+ + LV I C+
Sbjct: 135 NKCDLEDERVVPAEDGRRL---ADDLGF-EFFEASAKENINVKQVFERLVDVI----CEK 186
Query: 185 M-ESIEP 190
M ES+EP
Sbjct: 187 MNESLEP 193
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 111 bits (277), Expect = 5e-25
Identities = 61/164 (37%), Positives = 98/164 (59%), Gaps = 11/164 (6%)
Query: 8 HLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIA 67
+L+K ++IGD GVGK+ ++ ++ + F + TIGV+F ++++ D + + +LQ+WD A
Sbjct: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQI-KLQIWDTA 63
Query: 68 GQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLAN 127
GQE F ++TR YYR A GA +V+D+TR TF + W D S + ++L+ N
Sbjct: 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS----SNMVIMLIGN 119
Query: 128 KCD--QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEA 169
K D +DV G + F +EHG + + ETSAK N++EA
Sbjct: 120 KSDLESRRDVKREEG---EAFAREHGLI-FMETSAKTACNVEEA 159
>gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens]
Length = 199
Score = 110 bits (276), Expect = 7e-25
Identities = 63/191 (32%), Positives = 107/191 (56%), Gaps = 5/191 (2%)
Query: 4 PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQL 63
P K+ KL+++G +GVGKTS+ +YVH+ F Y+ T+G K++ +T ++LQ+
Sbjct: 3 PRKKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILG-DTTLKLQI 61
Query: 64 WDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVV 123
WD GQERF +M +Y+ + G + FDVT +FEA+ W+ D+ +K+ +P + +V
Sbjct: 62 WDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKI-VPMEQSYPMV 120
Query: 124 LLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECD 183
LL NK D + +C+E + +FE SAK +IN+ +A L L+
Sbjct: 121 LLGNKIDLADRKVPQE--VAQGWCREKD-IPYFEVSAKNDINVVQAFEMLASRALSRYQS 177
Query: 184 LMESIEPDVVK 194
++E+ + +K
Sbjct: 178 ILENHLTESIK 188
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 108 bits (270), Expect = 3e-24
Identities = 71/204 (34%), Positives = 110/204 (53%), Gaps = 11/204 (5%)
Query: 7 EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDI 66
+ L+KL+++GD VGKT +++R+ FS +TIGVDF +K L + V +LQ+WD
Sbjct: 16 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV-KLQIWDT 74
Query: 67 AGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLA 126
AGQERF +T+ YYR A GA + +D+T+ ++F +V W D+ G + +L+
Sbjct: 75 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIG 130
Query: 127 NKCDQGKDVLMNNGLKMDQFCKEH-GFVGWFETSAKENINIDEA-SRCLVKHILANECDL 184
NK D + L L Q EH + ETSAK++ N++EA R + I+ + L
Sbjct: 131 NKSDLSE--LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPL 188
Query: 185 MESIEPDVVKPHLTSTKVASCSGC 208
PD ++ L S + GC
Sbjct: 189 FSEKSPDHIQ--LNSKDIGEGWGC 210
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 107 bits (268), Expect = 6e-24
Identities = 63/181 (34%), Positives = 106/181 (58%), Gaps = 12/181 (6%)
Query: 3 APHK-EHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRL 61
AP+ +++K ++IGD+GVGK+ ++ ++ + F + TIGV+F +++ + + +L
Sbjct: 4 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI-KL 62
Query: 62 QLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVS 121
Q+WD AGQERF +TR YYR A GA +V+D+TR +T+ ++ W D L+ PN
Sbjct: 63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA-RNLTNPN---TV 118
Query: 122 VVLLANKCD--QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179
++L+ NK D +DV + QF +E+G + + E SAK N+++A K I
Sbjct: 119 IILIGNKADLEAQRDVTYE---EAKQFAEENGLL-FLEASAKTGENVEDAFLEAAKKIYQ 174
Query: 180 N 180
N
Sbjct: 175 N 175
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 107 bits (267), Expect = 7e-24
Identities = 59/164 (35%), Positives = 97/164 (59%), Gaps = 11/164 (6%)
Query: 8 HLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIA 67
+L+K ++IGD GVGK+ ++ ++ + F + TIGV+F +++ D + + +LQ+WD A
Sbjct: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQI-KLQIWDTA 63
Query: 68 GQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLAN 127
GQE F ++TR YYR A GA +V+D+TR TF + W D + + ++L+ N
Sbjct: 64 GQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQH----SNSNMVIMLIGN 119
Query: 128 KCD--QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEA 169
K D ++V G + F +EHG + + ETSAK N++EA
Sbjct: 120 KSDLESRREVKKEEG---EAFAREHGLI-FMETSAKTASNVEEA 159
>gi|4759012 RAB9A, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 107 bits (266), Expect = 1e-23
Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 3/200 (1%)
Query: 6 KEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWD 65
K L+K++++GD GVGK+S++ RYV F + TIGV+F K L D V +Q+WD
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVT-MQIWD 62
Query: 66 IAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLL 125
AGQERF ++ +YR + + F V +F+ ++ WK + + + V+L
Sbjct: 63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122
Query: 126 ANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDLM 185
NK D + + + +C+++G +FETSAK+ N+ A V+ +LA E
Sbjct: 123 GNKIDISERQVSTE--EAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSD 180
Query: 186 ESIEPDVVKPHLTSTKVASC 205
I+ D V H +SC
Sbjct: 181 HLIQTDTVNLHRKPKPSSSC 200
>gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens]
Length = 208
Score = 107 bits (266), Expect = 1e-23
Identities = 61/164 (37%), Positives = 100/164 (60%), Gaps = 11/164 (6%)
Query: 10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQ 69
+KL+ +G+ VGKTS+I R+++ +F + Y+ATIG+DF K ++ + TV RLQLWD AGQ
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQ 72
Query: 70 ERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKC 129
ERF ++ Y R++ A +V+D+T +F+ +KW +D+ ++ G V ++L+ NK
Sbjct: 73 ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE----RGSDVIIMLVGNKT 128
Query: 130 D--QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASR 171
D + + + G +Q KE V + ETSAK N+ + R
Sbjct: 129 DLADKRQITIEEG---EQRAKELS-VMFIETSAKTGYNVKQLFR 168
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,656,612
Number of Sequences: 37866
Number of extensions: 296850
Number of successful extensions: 1055
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 237
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.