Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RAB3A Sequence: fasta or formatted (220aa) NCBI GI: 4506367
Description:

RAB3A, member RAS oncogene family

Referenced in:

Rab
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         16           1
 C cysteine            1.8          4           1
 D aspartate           9.1         20           2
 E glutamate           5.5         12           2
 F phenylalanine       5.9         13           2
 G glycine             5.5         12           1
 H histidine           0.9          2           1
 I isoleucine          5.9         13           2
 K lysine              5.9         13           1
 L leucine             5.0         11           2
 M methionine          2.7          6           1
 N asparagine          4.1          9           1
 P proline             2.3          5           2
 Q glutamine           6.4         14           2
 R arginine            5.0         11           1
 S serine              8.2         18           2
 T threonine           6.8         15           2
 V valine              6.4         14           2
 W tryptophan          1.4          3           1
 Y tyrosine            4.1          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB3A, member RAS oncogene family 
RAB3C                 0.851   RAB3C, member RAS oncogene family 
RAB3B                 0.787   RAB3B, member RAS oncogene family 
RAB3D                 0.775   RAB3D, member RAS oncogene family 
RAB8A                 0.436   mel transforming oncogene 
RAB8B                 0.427   RAB8B, member RAS oncogene family 
RAB10                 0.405   ras-related GTP-binding protein RAB10 
RAB1A                 0.400   RAB1A, member RAS oncogene family isoform 1 
RAB13                 0.384   RAB13, member RAS oncogene family 
RAB27B                0.382   RAB27B, member RAS oncogene family 
RAB1B                 0.379   RAB1B, member RAS oncogene family 
LOC100131294          0.377   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.377   PREDICTED: similar to hCG24991 
LOC100131294          0.377   PREDICTED: similar to hCG24991 
RAB12                 0.365   RAB12, member RAS oncogene family 
RAB27A                0.363   Ras-related protein Rab-27A 
RAB27A                0.363   Ras-related protein Rab-27A 
RAB27A                0.363   Ras-related protein Rab-27A 
RAB27A                0.363   Ras-related protein Rab-27A 
RAB35                 0.346   RAB35, member RAS oncogene family 
RAB11B                0.318   RAB11B, member RAS oncogene family 
RAB30                 0.315   RAB30, member RAS oncogene family 
RAB37                 0.313   RAB37, member RAS oncogene family isoform 2 
RAB2A                 0.310   RAB2A, member RAS oncogene family 
RAB2B                 0.310   RAB2B protein isoform 1 
EFCAB4B               0.310   EF-hand calcium binding domain 4B isoform a 
RAB26                 0.306   RAB26, member RAS oncogene family 
RAB14                 0.306   GTPase Rab14 
RAB11A                0.301   Ras-related protein Rab-11A 
RAB43                 0.301   RAB43 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press