Guide to the Human Genome
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Name: RAB3C Sequence: fasta or formatted (227aa) NCBI GI: 19923985
Description:

RAB3C, member RAS oncogene family

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         16           2
 C cysteine            1.8          4           1
 D aspartate           7.5         17           2
 E glutamate           6.6         15           2
 F phenylalanine       6.2         14           2
 G glycine             4.8         11           1
 H histidine           0.9          2           1
 I isoleucine          6.6         15           2
 K lysine              6.6         15           1
 L leucine             4.8         11           2
 M methionine          3.5          8           1
 N asparagine          4.8         11           1
 P proline             3.1          7           4
 Q glutamine           6.2         14           1
 R arginine            4.8         11           1
 S serine              7.0         16           2
 T threonine           7.9         18           2
 V valine              4.8         11           1
 W tryptophan          1.3          3           1
 Y tyrosine            3.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB3C, member RAS oncogene family 
RAB3A                 0.822   RAB3A, member RAS oncogene family 
RAB3B                 0.792   RAB3B, member RAS oncogene family 
RAB3D                 0.714   RAB3D, member RAS oncogene family 
RAB8A                 0.416   mel transforming oncogene 
RAB8B                 0.405   RAB8B, member RAS oncogene family 
RAB10                 0.387   ras-related GTP-binding protein RAB10 
RAB1A                 0.384   RAB1A, member RAS oncogene family isoform 1 
RAB13                 0.375   RAB13, member RAS oncogene family 
LOC100131294          0.368   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.368   PREDICTED: similar to hCG24991 
LOC100131294          0.368   PREDICTED: similar to hCG24991 
RAB1B                 0.364   RAB1B, member RAS oncogene family 
RAB12                 0.359   RAB12, member RAS oncogene family 
RAB27B                0.357   RAB27B, member RAS oncogene family 
RAB27A                0.350   Ras-related protein Rab-27A 
RAB27A                0.350   Ras-related protein Rab-27A 
RAB27A                0.350   Ras-related protein Rab-27A 
RAB27A                0.350   Ras-related protein Rab-27A 
RAB35                 0.343   RAB35, member RAS oncogene family 
RAB37                 0.307   RAB37, member RAS oncogene family isoform 2 
RAB30                 0.304   RAB30, member RAS oncogene family 
RAB26                 0.297   RAB26, member RAS oncogene family 
RAB11B                0.291   RAB11B, member RAS oncogene family 
RAB11A                0.288   Ras-related protein Rab-11A 
RAB43                 0.286   RAB43 protein 
RAB19                 0.284   RAB19, member RAS oncogene family 
RAB14                 0.284   GTPase Rab14 
RAB37                 0.284   RAB37, member RAS oncogene family isoform 3 
RAB25                 0.281   RAB25 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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