Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RAB2B Sequence: fasta or formatted (216aa) NCBI GI: 21361884
Description:

RAB2B protein isoform 1

Referenced in:

Rab

Other entries for this name:
alt prot [170aa] RAB2B protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         15           2
 C cysteine            1.9          4           2
 D aspartate           5.1         11           1
 E glutamate           6.5         14           2
 F phenylalanine       4.6         10           1
 G glycine             8.3         18           1
 H histidine           2.3          5           1
 I isoleucine          8.8         19           3
 K lysine              5.1         11           1
 L leucine             6.5         14           3
 M methionine          2.3          5           1
 N asparagine          4.6         10           1
 P proline             1.4          3           1
 Q glutamine           5.1         11           2
 R arginine            6.9         15           2
 S serine              8.8         19           3
 T threonine           6.0         13           1
 V valine              4.6         10           1
 W tryptophan          0.9          2           1
 Y tyrosine            3.2          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB2B protein isoform 1 
RAB2A                 0.829   RAB2A, member RAS oncogene family 
RAB2B                 0.770   RAB2B protein isoform 2 
RAB14                 0.535   GTPase Rab14 
RAB4A                 0.487   RAB4A, member RAS oncogene family 
RAB4B                 0.472   ras-related GTP-binding protein 4b 
RAB8B                 0.421   RAB8B, member RAS oncogene family 
RAB11B                0.408   RAB11B, member RAS oncogene family 
RAB8A                 0.406   mel transforming oncogene 
RAB11A                0.403   Ras-related protein Rab-11A 
RAB13                 0.391   RAB13, member RAS oncogene family 
RAB1A                 0.386   RAB1A, member RAS oncogene family isoform 1 
RAB39B                0.386   RAB39B, member RAS oncogene family 
LOC100131294          0.384   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.384   PREDICTED: similar to hCG24991 
LOC100131294          0.384   PREDICTED: similar to hCG24991 
RAB10                 0.381   ras-related GTP-binding protein RAB10 
RAB1B                 0.381   RAB1B, member RAS oncogene family 
RAB39                 0.379   RAB39, member RAS oncogene family 
RAB43                 0.367   RAB43 protein 
RAB37                 0.364   RAB37, member RAS oncogene family isoform 2 
RAB18                 0.362   RAB18, member RAS oncogene family 
RAB37                 0.359   RAB37, member RAS oncogene family isoform 3 
RAB25                 0.350   RAB25 
RAB30                 0.350   RAB30, member RAS oncogene family 
RAB19                 0.347   RAB19, member RAS oncogene family 
RAB26                 0.347   RAB26, member RAS oncogene family 
RAB5B                 0.325   RAB5B, member RAS oncogene family 
RAB3A                 0.320   RAB3A, member RAS oncogene family 
RAB5C                 0.318   RAB5C, member RAS oncogene family isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press