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Search of human proteins with 239744263
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744263 PREDICTED: hypothetical protein XP_002343106 [Homo
sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755462 PREDICTED: hypothetical protein [Homo sapiens] 223 3e-59
gi|239749953 PREDICTED: hypothetical protein [Homo sapiens] 223 3e-59
gi|239744263 PREDICTED: hypothetical protein XP_002343106 [Homo ... 223 3e-59
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ... 35 0.013
gi|142353874 hypothetical protein LOC650662 [Homo sapiens] 34 0.022
gi|31542255 hypothetical protein LOC140706 [Homo sapiens] 34 0.028
gi|4507917 WEE1 tyrosine kinase isoform 1 [Homo sapiens] 33 0.048
gi|61102725 la related protein isoform 2 [Homo sapiens] 33 0.048
gi|185136021 spinster homolog 2 [Homo sapiens] 33 0.063
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 32 0.082
gi|170296790 mesotrypsin isoform 1 preproprotein [Homo sapiens] 32 0.11
gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo ... 32 0.14
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|188536004 zinc finger protein 469 [Homo sapiens] 31 0.24
gi|32698692 zinc finger, DHHC domain containing 8 [Homo sapiens] 31 0.24
gi|57864582 hornerin [Homo sapiens] 30 0.41
gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo ... 30 0.41
gi|239754838 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|46249382 paired-like homeobox 2a [Homo sapiens] 30 0.41
gi|34486092 adenylate cyclase 5 [Homo sapiens] 30 0.41
gi|33286436 gametogenetin [Homo sapiens] 30 0.41
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 30 0.53
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 30 0.53
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 30 0.53
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ... 29 0.70
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 29 0.70
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 29 0.70
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 29 0.70
gi|41872577 raft-linking protein [Homo sapiens] 29 0.70
>gi|239755462 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 223 bits (568), Expect = 3e-59
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MGTPGDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDR 60
MGTPGDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDR
Sbjct: 1 MGTPGDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDR 60
Query: 61 CHGAGDRPASSNPGAGAAEAGKAWALRHQGPKPSSQTHCSLPL 103
CHGAGDRPASSNPGAGAAEAGKAWALRHQGPKPSSQTHCSLPL
Sbjct: 61 CHGAGDRPASSNPGAGAAEAGKAWALRHQGPKPSSQTHCSLPL 103
>gi|239749953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 223 bits (568), Expect = 3e-59
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MGTPGDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDR 60
MGTPGDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDR
Sbjct: 1 MGTPGDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDR 60
Query: 61 CHGAGDRPASSNPGAGAAEAGKAWALRHQGPKPSSQTHCSLPL 103
CHGAGDRPASSNPGAGAAEAGKAWALRHQGPKPSSQTHCSLPL
Sbjct: 61 CHGAGDRPASSNPGAGAAEAGKAWALRHQGPKPSSQTHCSLPL 103
>gi|239744263 PREDICTED: hypothetical protein XP_002343106 [Homo
sapiens]
Length = 103
Score = 223 bits (568), Expect = 3e-59
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MGTPGDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDR 60
MGTPGDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDR
Sbjct: 1 MGTPGDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDR 60
Query: 61 CHGAGDRPASSNPGAGAAEAGKAWALRHQGPKPSSQTHCSLPL 103
CHGAGDRPASSNPGAGAAEAGKAWALRHQGPKPSSQTHCSLPL
Sbjct: 61 CHGAGDRPASSNPGAGAAEAGKAWALRHQGPKPSSQTHCSLPL 103
>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 650
Score = 35.0 bits (79), Expect = 0.013
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 27 GERRGGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGAGDRPASSNPGAGAAEAGKAWAL 86
GE G GA+G SS+S E S SD G RP P + G+A L
Sbjct: 157 GEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARP-RPGPTSSRRPWGRAGGL 215
Query: 87 RHQG-------PKPSSQTHCSLP 102
R +G +PSSQ CS P
Sbjct: 216 RPRGKRPARGKKRPSSQRRCSSP 238
>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
sapiens]
Length = 725
Score = 35.0 bits (79), Expect = 0.013
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 27 GERRGGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGAGDRPASSNPGAGAAEAGKAWAL 86
GE G GA+G SS+S E S SD G RP P + G+A L
Sbjct: 157 GEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARP-RPGPTSSRRPWGRAGGL 215
Query: 87 RHQG-------PKPSSQTHCSLP 102
R +G +PSSQ CS P
Sbjct: 216 RPRGKRPARGKKRPSSQRRCSSP 238
>gi|142353874 hypothetical protein LOC650662 [Homo sapiens]
Length = 148
Score = 34.3 bits (77), Expect = 0.022
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 3 TPGDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPR 50
TPG+ AR TR+ R G +GE G A+ LSS+ GA PEA R
Sbjct: 81 TPGERGAR-----TRRDRAGRARKGE---GAAASTLSSLRGAAPEAGR 120
>gi|31542255 hypothetical protein LOC140706 [Homo sapiens]
Length = 433
Score = 33.9 bits (76), Expect = 0.028
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 16/89 (17%)
Query: 29 RRGGGASGDLSSISGAPPEAPRWHSQAVLS---DRCHGAGDRPASSNPGAGAAE------ 79
R GGG G L + W + S +R HG G + G+ E
Sbjct: 215 RAGGGGGGSLERQRAGARASGSWERRQTFSGSWERRHGGGGGGGGAGKPGGSWERRQAGS 274
Query: 80 -AGKAWALRHQGPK------PSSQTHCSL 101
G +W RH GP PS +C+L
Sbjct: 275 GGGGSWERRHPGPNPLDPQDPSPDAYCNL 303
>gi|4507917 WEE1 tyrosine kinase isoform 1 [Homo sapiens]
Length = 646
Score = 33.1 bits (74), Expect = 0.048
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 21 PGSICRGERRGGGASGDL-------SSISGAPPEAPRWHSQAVLSDRCHGAGDRPASSNP 73
PG+ + GGGA GD SS P AP + + RC G GD +S
Sbjct: 96 PGACPGADEAGGGAEGDSWEEEGFGSSSPVKSPAAPYFLGSSFSPVRCGGPGD---ASPR 152
Query: 74 GAGAAEAGKAWALRHQGPKP 93
G GA AG+ + P+P
Sbjct: 153 GCGARRAGEG----RRSPRP 168
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 33.1 bits (74), Expect = 0.048
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 2 GTPGDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDRC 61
G PG D R +RP C + G +G S P + P A+ SD
Sbjct: 37 GEPGPNDVRGGEPDGSARRPRPPCAKPHKEG--TGQQERESPRPLQLPGAEGPAI-SDGE 93
Query: 62 HGAGDRPASSNPGAGAAEAGKAWALRHQGPKPSSQTHCSLP 102
G G+ P + AGAA AG+ + PK + T +LP
Sbjct: 94 EGGGE-PGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALP 133
>gi|185136021 spinster homolog 2 [Homo sapiens]
Length = 549
Score = 32.7 bits (73), Expect = 0.063
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 6 DGDARRWGQGTRKQRPGSICRGERRGGG----ASGD-LSSISGA-------PPEAPRWHS 53
D + RR +G ++ GS C G R GG A+GD + ++SG+ PP P
Sbjct: 20 DAERRRRRRGAQRGAGGSGCCGARGAGGAGVSAAGDEVQTLSGSVRRAPTGPPGTPGTPG 79
Query: 54 QAVLSDRCHGAGDRPASSNPGAGAAEA 80
A + +PAS G GAA A
Sbjct: 80 CAATAKGPGAQQPKPASLGRGRGAAAA 106
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 32.3 bits (72), Expect = 0.082
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 27 GERRGGGASGDLSSISGAPPEAPR---WHSQAVLSDRCHGAGDRPASSNPGAGAAEAGKA 83
G GGGA G G P+ P W + V + + G+G AS +P + +A
Sbjct: 169 GGGEGGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPG 228
Query: 84 WALRHQG 90
R+ G
Sbjct: 229 TGSRNSG 235
>gi|170296790 mesotrypsin isoform 1 preproprotein [Homo sapiens]
Length = 304
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 4 PGDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISG 43
PG G A + G+G RPG + RG + GGA +L + G
Sbjct: 13 PGPGRAVKCGKGLAAARPGRVERGGAQRGGAGLELHPLLG 52
>gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo
sapiens]
Length = 224
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 10 RRWGQGTRKQRPGSICRGERRG--GGASGDLSSISGAPP----EAPRWHSQAVLSDRCHG 63
R W G + P RG RG GG G +++ A A S A+ S R
Sbjct: 44 RTWPAGILEGGPQVAARGGGRGWEGGGLGARRAVTAARRGEWGRARESRSAALASPRVSN 103
Query: 64 AGDRPASSNPGAGAAE 79
A PAS NPG A E
Sbjct: 104 APTTPASRNPGLRAQE 119
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 30.8 bits (68), Expect = 0.24
Identities = 28/99 (28%), Positives = 35/99 (35%), Gaps = 29/99 (29%)
Query: 10 RRWGQGTRKQRPGSICRGERRG--GGASGDLSSISGA---------------------PP 46
R W G + P RG RG GG G +++ A P
Sbjct: 92 RTWPAGILEGGPQVAARGGGRGWEGGGLGARRAVTAARRGGASRPLAGEPWREAARRRPQ 151
Query: 47 EAPRW------HSQAVLSDRCHGAGDRPASSNPGAGAAE 79
+ P+W S A+ S R A PAS NPG A E
Sbjct: 152 QCPQWGRARESRSAALASPRVSNAPTTPASRNPGLRAQE 190
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 14 QGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGAGDRPASSNP 73
QG+ RPG+ G + ASG L S + P P + S++ +R R + +
Sbjct: 3705 QGSGSPRPGTKTGGGSQPQPASGQLQSETATTPAKPSFPSRSPAPERLPA---RAQAKSC 3761
Query: 74 GAGAAEAGKAWALRHQGPKPSSQT 97
G EAG+ GPK ++
Sbjct: 3762 TKGPREAGEQGPHGSLGPKEKGES 3785
>gi|32698692 zinc finger, DHHC domain containing 8 [Homo sapiens]
Length = 765
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 27 GERRGGGASGDLSSISGAPPEAPRWHSQAVLSDRC--HGAGDRPASSNPGAGAAEA---- 80
G R LSS+S + APR S ++ +D+ + G RP+S + + A +
Sbjct: 617 GGARNPALQTSLSSLSSSVSRAPRTSSSSLQADQASSNAPGPRPSSGSHRSPARQGLPSP 676
Query: 81 -GKAWALRHQGPKPSSQTHCSLP 102
G + + GPK + H LP
Sbjct: 677 PGTPHSPSYAGPKAVAFIHTDLP 699
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 30.0 bits (66), Expect = 0.41
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 5 GDGDARRWGQGTRKQRPGSICRGERRGGGASGDLS-SISGAPPEAPRWHSQAVLSDRCHG 63
G G G G R G RGER+G A S G+ HS+ HG
Sbjct: 482 GSGSGHSSGHGQHGSRSGQSSRGERQGSSAGSSSSYGQHGSGSRQSLGHSR-------HG 534
Query: 64 AGDRPASSNPGAGAAEAG 81
+G S +P G E+G
Sbjct: 535 SGS-GQSPSPSRGRHESG 551
Score = 27.7 bits (60), Expect = 2.0
Identities = 25/94 (26%), Positives = 31/94 (32%), Gaps = 19/94 (20%)
Query: 5 GDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGA 64
G G G G R G RGER G+S SS G HG+
Sbjct: 2124 GSGSGHSSGYGQHGSRSGQSSRGERH--GSSSGSSSRYGQ-----------------HGS 2164
Query: 65 GDRPASSNPGAGAAEAGKAWALRHQGPKPSSQTH 98
G R +S + G+ RH S +H
Sbjct: 2165 GSRQSSGHGRQGSGSGHSPSRGRHGSGSGHSSSH 2198
Score = 26.9 bits (58), Expect = 3.5
Identities = 25/94 (26%), Positives = 31/94 (32%), Gaps = 19/94 (20%)
Query: 5 GDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGA 64
G G G G R G RGER G+S SS G HG+
Sbjct: 1184 GSGSGHSSGYGQHGSRSGQSSRGERH--GSSSGSSSHYGQ-----------------HGS 1224
Query: 65 GDRPASSNPGAGAAEAGKAWALRHQGPKPSSQTH 98
G R +S + G+ RH S +H
Sbjct: 1225 GSRQSSGHGRQGSGSGHSPSRGRHGSGLGHSSSH 1258
Score = 26.9 bits (58), Expect = 3.5
Identities = 25/94 (26%), Positives = 31/94 (32%), Gaps = 19/94 (20%)
Query: 5 GDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGA 64
G G G G R G RGER G+S SS G HG+
Sbjct: 2594 GSGSGHSSGYGQHGSRSGQSSRGERH--GSSSGSSSHYGQ-----------------HGS 2634
Query: 65 GDRPASSNPGAGAAEAGKAWALRHQGPKPSSQTH 98
G R +S + G+ RH S +H
Sbjct: 2635 GSRQSSGHGRQGSGSGQSPSRGRHGSGLGHSSSH 2668
Score = 26.6 bits (57), Expect = 4.5
Identities = 25/94 (26%), Positives = 31/94 (32%), Gaps = 19/94 (20%)
Query: 5 GDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGA 64
G G G G R G RGER G+S SS G HG+
Sbjct: 1654 GSGSGHSSGYGQHGSRSGQSSRGERH--GSSSRSSSRYGQ-----------------HGS 1694
Query: 65 GDRPASSNPGAGAAEAGKAWALRHQGPKPSSQTH 98
G R +S + G+ RH S +H
Sbjct: 1695 GSRQSSGHGRQGSGSGQSPSRGRHGSGLGHSSSH 1728
>gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo
sapiens]
Length = 316
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 9 ARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGAGDRP 68
A+ G+G +K R + G GD S + RW +AV + C G G +P
Sbjct: 188 AKSRGEGGKKPRQQKPAAAGAKSG--LGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKP 245
Query: 69 -ASSNPGA 75
++ PGA
Sbjct: 246 QKAAAPGA 253
>gi|239754838 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 27 GERRGGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGAGDRPASSNPGAGAAEA 80
G+RRGGGA G G PP P + G A++ G+ + EA
Sbjct: 105 GQRRGGGAKGQRG--GGGPPNPPAGQGSDTGGTKTPGTTTAAAAAATGSASPEA 156
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 73 PGAGAAEAGKAWALRHQGPKPSS 95
PGAGAAE KAW GP P S
Sbjct: 243 PGAGAAELLKAWQPAESGPGPFS 265
>gi|34486092 adenylate cyclase 5 [Homo sapiens]
Length = 1261
Score = 30.0 bits (66), Expect = 0.41
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 13 GQGTRKQRPGSICRGERR-----GGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGAGDR 67
G+G+R+QR G+ G R GGG S ++ +G PR + L +R G
Sbjct: 112 GRGSRRQRRGAASGGSTRAPPAGGGGGSAAAAASAGGTEVRPR-SVEVGLEER---RGKG 167
Query: 68 PASSNPGAGAAEAGK 82
A+ AGA E G+
Sbjct: 168 RAADELEAGAVEGGE 182
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 16 TRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGAGDRPASSNPGA 75
TR+ + RG R G GD PR + A + D G G +S GA
Sbjct: 525 TRRNKGSRAARGATRKDGLHGD----------GPRERATATVPDSSGGGGGGSGASQTGA 574
Query: 76 GAAEAGKAW 84
A + W
Sbjct: 575 ANTRAARHW 583
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 22 GSICRGERRGGGASGDLSSISGAPPEAPRWHSQAV 56
G + RG + G GD SG PP AP ++A+
Sbjct: 303 GEVSRGAQEAEGGDGDGEGCSG-PPSAPASQARAL 336
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 29.6 bits (65), Expect = 0.53
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 13 GQGTRKQ-RPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGAGDRPASS 71
GQG + RP S R + D + G EAPR + + L R G G PA +
Sbjct: 1334 GQGRPEAGRPASEARAPGLAAADAADAARAGGK--EAPRAAAGSELCRR-EGPGAAPAFA 1390
Query: 72 NPGAGAAEA----GKAWALRHQGPKP 93
PG G + A G+A A GP+P
Sbjct: 1391 GPGGGGSGALEAEGRAGA--RAGPRP 1414
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 29.6 bits (65), Expect = 0.53
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 4 PGDGDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGA 44
PG G RR GQ +R R G RG RGGG + +S A
Sbjct: 274 PGPGTPRRGGQSSRGGRGG---RGRGRGGGLPFVIKFVSRA 311
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 29.6 bits (65), Expect = 0.53
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 2 GTPGD--GDARRWGQGTRKQRPGSICRGERRGGGASGDLSSISGAPPEAPRWHSQAVLS- 58
G GD G A +G+ P + G RG + DL+S P E P ++AV S
Sbjct: 267 GGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSL-AEAVYSV 325
Query: 59 --DRCHGAGDRPASSNPGAGAAEA 80
+R AG R A++ A AA +
Sbjct: 326 YRERSGVAGSRRAAAATAAAAASS 349
>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
[Homo sapiens]
Length = 825
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 5 GDGDARRWGQGTRKQRPGSICRGERRGGGASG---DLSSISGAPPEAPRWHSQAVLSDRC 61
G G+ + T++Q+P + G S L +++ APP A + QA +
Sbjct: 157 GHGEQQPQPPATQQQQPQQQRGAAKEAAGKSSGPTSLFAVTVAPPGARQGQQQAGGKKKA 216
Query: 62 HGAGDRPASSNPGAGAAEAGK 82
G G PGA AA GK
Sbjct: 217 EGGG---GGGRPGAPAAGDGK 234
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 29 RRGGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGAGDRPA----SSNPGAGAAEAGKAW 84
R GG+ + SS S PP + SQA + G A + GA A A AW
Sbjct: 373 RSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAW 432
Query: 85 ALRHQGPKPS 94
A Q P+
Sbjct: 433 AAAQQRSHPA 442
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 29 RRGGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGAGDRPA----SSNPGAGAAEAGKAW 84
R GG+ + SS S PP + SQA + G A + GA A A AW
Sbjct: 373 RSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAW 432
Query: 85 ALRHQGPKPS 94
A Q P+
Sbjct: 433 AAAQQRSHPA 442
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 29 RRGGGASGDLSSISGAPPEAPRWHSQAVLSDRCHGAGDRPA----SSNPGAGAAEAGKAW 84
R GG+ + SS S PP + SQA + G A + GA A A AW
Sbjct: 373 RSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAW 432
Query: 85 ALRHQGPKPS 94
A Q P+
Sbjct: 433 AAAQQRSHPA 442
>gi|41872577 raft-linking protein [Homo sapiens]
Length = 578
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 39 SSISGAPPEAP--RWHSQAVLSDRCHGAGDRPASSNPGAGAAEAGKAWALRHQGPKPSSQ 96
SS++ A AP +S D + GD + N G + A A R+Q P+PSS
Sbjct: 167 SSVNSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSG 226
Query: 97 THCSLPL 103
+PL
Sbjct: 227 PRGEVPL 233
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.132 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,054,513
Number of Sequences: 37866
Number of extensions: 340851
Number of successful extensions: 1248
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 1162
Number of HSP's gapped (non-prelim): 186
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.