Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287643 Sequence: fasta or formatted (103aa) NCBI GI: 239744263
Description:

PREDICTED: hypothetical protein XP_002343106

Not currently referenced in the text

Other entries for this name:
alt mRNA {103aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.6         13           2
 C cysteine            2.9          3           1
 D aspartate           4.9          5           1
 E glutamate           2.9          3           1
 F phenylalanine       0.0          0           0
 G glycine            17.5         18           3
 H histidine           3.9          4           1
 I isoleucine          1.9          2           1
 K lysine              2.9          3           1
 L leucine             4.9          5           1
 M methionine          1.0          1           1
 N asparagine          1.0          1           1
 P proline             9.7         10           2
 Q glutamine           4.9          5           1
 R arginine           10.7         11           2
 S serine             11.7         12           2
 T threonine           2.9          3           1
 V valine              1.0          1           1
 W tryptophan          2.9          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343106 
LOC100294012          1.000   PREDICTED: hypothetical protein 
LOC100287643          1.000   PREDICTED: hypothetical protein 
LOC100289661          0.051   PREDICTED: hypothetical protein 
LOC100289661          0.051   PREDICTED: hypothetical protein XP_002343723 
PP8961                0.045   hypothetical protein LOC650662 
C20orf160             0.045   hypothetical protein LOC140706 
WEE1                  0.040   WEE1 tyrosine kinase isoform 1 
LARP1                 0.040   la related protein isoform 2 
SPNS2                 0.040   spinster homolog 2 
C6orf174              0.035   hypothetical protein LOC387104 
PRSS3                 0.035   mesotrypsin isoform 1 preproprotein 
LOC100287063          0.035   PREDICTED: hypothetical protein XP_002342368 
LOC100287063          0.030   PREDICTED: hypothetical protein 
ZNF469                0.030   zinc finger protein 469 
ZDHHC8                0.030   zinc finger, DHHC domain containing 8 
HRNR                  0.025   hornerin 
LOC100291835          0.025   PREDICTED: hypothetical protein XP_002346266 
LOC100293371          0.025   PREDICTED: hypothetical protein 
PHOX2A                0.025   paired-like homeobox 2a 
ADCY5                 0.025   adenylate cyclase 5 
GGN                   0.025   gametogenetin 
MAGI2                 0.025   membrane associated guanylate kinase, WW and PDZ dom...
MLL4                  0.025   myeloid/lymphoid or mixed-lineage leukemia 4 
TTMA                  0.025   hypothetical protein LOC645369 
HNRNPU                0.020   heterogeneous nuclear ribonucleoprotein U isoform a ...
ARID1B                0.020   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.020   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.020   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
RFTN1                 0.020   raft-linking protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press