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Search of human proteins with 239744085
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744085 PREDICTED: hypothetical protein XP_002343028
isoform 2 [Homo sapiens]
(172 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744085 PREDICTED: hypothetical protein XP_002343028 isofor... 354 2e-98
gi|5454122 translocase of inner mitochondrial membrane 23 (yeast... 335 9e-93
gi|239744083 PREDICTED: hypothetical protein XP_002343027 isofor... 335 9e-93
gi|169194838 PREDICTED: translocase of inner mitochondrial membr... 118 2e-27
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 35 0.024
gi|109255251 loricrin [Homo sapiens] 35 0.042
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 35 0.042
gi|62953127 polyhomeotic 1-like [Homo sapiens] 34 0.055
gi|59710109 hypothetical protein LOC51300 [Homo sapiens] 34 0.071
gi|122937424 one cut homeobox 3 [Homo sapiens] 32 0.27
gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens] 31 0.60
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 30 0.79
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 30 0.79
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 30 0.79
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 30 1.3
gi|34577122 nuclear factor kappa-B, subunit 1 [Homo sapiens] 29 1.8
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 29 1.8
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 29 1.8
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 29 1.8
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 29 1.8
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 29 1.8
gi|56606061 translocase of inner mitochondrial membrane 22 homol... 29 1.8
gi|10864053 myozenin 1 [Homo sapiens] 29 2.3
gi|239755627 PREDICTED: similar to cag [Homo sapiens] 29 2.3
gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo ... 29 2.3
gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo ... 29 2.3
gi|62422577 neurobeachin [Homo sapiens] 29 2.3
gi|119395750 keratin 1 [Homo sapiens] 28 3.0
gi|222352127 sidekick 2 [Homo sapiens] 28 3.0
gi|55956899 keratin 9 [Homo sapiens] 28 3.0
>gi|239744085 PREDICTED: hypothetical protein XP_002343028 isoform 2
[Homo sapiens]
Length = 172
Score = 354 bits (908), Expect = 2e-98
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEF 60
MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEF
Sbjct: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEF 60
Query: 61 ILPTGANKTRGRFELAFFTIGGCCMTGALWANTLGSLALLYSAFGVIIEKTRGAEDDLNT 120
ILPTGANKTRGRFELAFFTIGGCCMTGALWANTLGSLALLYSAFGVIIEKTRGAEDDLNT
Sbjct: 61 ILPTGANKTRGRFELAFFTIGGCCMTGALWANTLGSLALLYSAFGVIIEKTRGAEDDLNT 120
Query: 121 VAAGTMTGMLYKCTGGLRGIARGGLTGLTLTSLYALYNNWEHMKGSLLQQSL 172
VAAGTMTGMLYKCTGGLRGIARGGLTGLTLTSLYALYNNWEHMKGSLLQQSL
Sbjct: 121 VAAGTMTGMLYKCTGGLRGIARGGLTGLTLTSLYALYNNWEHMKGSLLQQSL 172
>gi|5454122 translocase of inner mitochondrial membrane 23 (yeast)
homolog [Homo sapiens]
Length = 209
Score = 335 bits (860), Expect = 9e-93
Identities = 172/209 (82%), Positives = 172/209 (82%), Gaps = 37/209 (17%)
Query: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEF 60
MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEF
Sbjct: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEF 60
Query: 61 ILPTGANKTRGRFELAFFTIGGCCMT---------------------------------- 86
ILPTGANKTRGRFELAFFTIGGCCMT
Sbjct: 61 ILPTGANKTRGRFELAFFTIGGCCMTGAAFGAMNGLRLGLKETQNMAWSKPRNVQILNMV 120
Query: 87 ---GALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGLRGIARG 143
GALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGLRGIARG
Sbjct: 121 TRQGALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGLRGIARG 180
Query: 144 GLTGLTLTSLYALYNNWEHMKGSLLQQSL 172
GLTGLTLTSLYALYNNWEHMKGSLLQQSL
Sbjct: 181 GLTGLTLTSLYALYNNWEHMKGSLLQQSL 209
>gi|239744083 PREDICTED: hypothetical protein XP_002343027 isoform 1
[Homo sapiens]
Length = 209
Score = 335 bits (860), Expect = 9e-93
Identities = 172/209 (82%), Positives = 172/209 (82%), Gaps = 37/209 (17%)
Query: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEF 60
MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEF
Sbjct: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEF 60
Query: 61 ILPTGANKTRGRFELAFFTIGGCCMT---------------------------------- 86
ILPTGANKTRGRFELAFFTIGGCCMT
Sbjct: 61 ILPTGANKTRGRFELAFFTIGGCCMTGAAFGAMNGLRLGLKETQNMAWSKPRNVQILNMV 120
Query: 87 ---GALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGLRGIARG 143
GALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGLRGIARG
Sbjct: 121 TRQGALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGLRGIARG 180
Query: 144 GLTGLTLTSLYALYNNWEHMKGSLLQQSL 172
GLTGLTLTSLYALYNNWEHMKGSLLQQSL
Sbjct: 181 GLTGLTLTSLYALYNNWEHMKGSLLQQSL 209
>gi|169194838 PREDICTED: translocase of inner mitochondrial
membrane 23 homolog B (yeast) [Homo sapiens]
Length = 61
Score = 118 bits (296), Expect = 2e-27
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQ 55
MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQ
Sbjct: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQ 55
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 35.4 bits (80), Expect = 0.024
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEFIL 62
GG G GN GG AG G GG G S A + + + P LN P V E +
Sbjct: 46 GGSGGGNGAGGGGAGGAGGGGGGGSRAPPEELSMFQL----PTLNFSPEQ-VASVCETLE 100
Query: 63 PTGANKTRGRFELAFFTIGGCC 84
TG + GRF + G C
Sbjct: 101 ETGDIERLGRFLWSLPVAPGAC 122
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 34.7 bits (78), Expect = 0.042
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG G + GG GFFG GG+G
Sbjct: 21 GGGGGGGGSGGGGCGFFGGGGSG 43
Score = 29.3 bits (64), Expect = 1.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAG 33
GGGGSG ++G G+ +GG GYS G
Sbjct: 38 GGGGSGGGSSGSGCGY--SGGGGYSGGGCGG 66
Score = 27.3 bits (59), Expect = 6.7
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYS 27
GGGGS +GG +G F +GG G+S
Sbjct: 132 GGGGS----SGGGSGCFSSGGGGFS 152
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 34.7 bits (78), Expect = 0.042
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVD 49
GGGGS T G AG +G GG G G M PL+ NV+
Sbjct: 58 GGGGSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVN 104
>gi|62953127 polyhomeotic 1-like [Homo sapiens]
Length = 1004
Score = 34.3 bits (77), Expect = 0.055
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 2 EGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGM 39
+ GGGSGN G + G GG G +H L +P +GM
Sbjct: 266 QAGGGSGNSIPGSM----GPGGGGQAHGGLGQLPSSGM 299
>gi|59710109 hypothetical protein LOC51300 [Homo sapiens]
Length = 285
Score = 33.9 bits (76), Expect = 0.071
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 87 GALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGLRGIARGGLT 146
G W +++ + R + + V AG +TG L++ GLRG+ GG+
Sbjct: 135 GWRWGWRTAVFVTIFNTVNTSLNVYRNKDALSHFVIAGAVTGSLFRINVGLRGLVAGGII 194
Query: 147 GLTL-TSLYALYNNWEHMKGSLLQQ 170
G L T + L ++ G +Q+
Sbjct: 195 GALLGTPVGGLLMAFQKYSGETVQE 219
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 32.0 bits (71), Expect = 0.27
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGV--PLTGMNPLSPYL 46
++GGGG G GG G AGG +LAG P GM +P L
Sbjct: 54 LDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGL 101
>gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens]
Length = 269
Score = 30.8 bits (68), Expect = 0.60
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLT 37
GG GSG +G G G+GG G+ A A T
Sbjct: 37 GGAGSGGAGSGAAGGTGGSGGGGFGAATFASTSAT 71
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 30.4 bits (67), Expect = 0.79
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG G GG G GAGGAG
Sbjct: 255 GGGGGGGSGGGGGGGGAGAGGAG 277
Score = 29.3 bits (64), Expect = 1.8
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGV 34
GGGG G GG G G GGAG A V
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAV 281
Score = 29.3 bits (64), Expect = 1.8
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTG 38
GGGGSG GG AG GAG + A A G
Sbjct: 258 GGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 30.4 bits (67), Expect = 0.79
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG G GG G GAGGAG
Sbjct: 255 GGGGGGGSGGGGGGGGAGAGGAG 277
Score = 29.3 bits (64), Expect = 1.8
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGV 34
GGGG G GG G G GGAG A V
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAV 281
Score = 29.3 bits (64), Expect = 1.8
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTG 38
GGGGSG GG AG GAG + A A G
Sbjct: 258 GGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 30.4 bits (67), Expect = 0.79
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG G GG G GAGGAG
Sbjct: 255 GGGGGGGSGGGGGGGGAGAGGAG 277
Score = 29.3 bits (64), Expect = 1.8
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGV 34
GGGG G GG G G GGAG A V
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAV 281
Score = 29.3 bits (64), Expect = 1.8
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTG 38
GGGGSG GG AG GAG + A A G
Sbjct: 258 GGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 29.6 bits (65), Expect = 1.3
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLA 32
GGG SGN G F G GG G SH A
Sbjct: 207 GGGFSGNDNFGHGGNFSGCGGLGGSHGGSA 236
>gi|34577122 nuclear factor kappa-B, subunit 1 [Homo sapiens]
Length = 969
Score = 29.3 bits (64), Expect = 1.8
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTG---MNPLSPYLNVDPRYLVQDTDE 59
G GG G +GG G G+ G GYS G P G +P + N ++ DT+
Sbjct: 382 GAGGGGMFGSGGGGGGTGSTGPGYSFPHY-GFPTYGGITFHPGTTKSNAGMKHGTMDTES 440
Query: 60 FILPTGANKT 69
P G +K+
Sbjct: 441 KKDPEGCDKS 450
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 29.3 bits (64), Expect = 1.8
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLA 32
GGG SGN G F G GG G SH A
Sbjct: 207 GGGFSGNDNFGHGGNFSGCGGFGGSHGGSA 236
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 29.3 bits (64), Expect = 1.8
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLA 32
GGG SGN G F G GG G SH A
Sbjct: 207 GGGFSGNDNFGHGGNFSGCGGFGGSHGGSA 236
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 29.3 bits (64), Expect = 1.8
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYL 46
GGGGSG GG G G GG G H L G LS +L
Sbjct: 3509 GGGGSG----GGGGGGGGGGGGGSYHCLACESALCGEEALSQHL 3548
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 29.3 bits (64), Expect = 1.8
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG GN GG GF GG G
Sbjct: 34 GGGGGGNFRGGGRGGFGRGGGRG 56
Score = 28.5 bits (62), Expect = 3.0
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 3 GGGGSGNKTTGGLAGFFGAGG--AGYSHADLAGVP 35
GGGG G GG G FG GG G++ G P
Sbjct: 33 GGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPP 67
Score = 28.5 bits (62), Expect = 3.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGY 26
GGGG G GG G G GG G+
Sbjct: 181 GGGGRGGGRGGGFRGGRGGGGGGF 204
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 29.3 bits (64), Expect = 1.8
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG GN GG GF GG G
Sbjct: 34 GGGGGGNFRGGGRGGFGRGGGRG 56
Score = 28.5 bits (62), Expect = 3.0
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 3 GGGGSGNKTTGGLAGFFGAGG--AGYSHADLAGVP 35
GGGG G GG G FG GG G++ G P
Sbjct: 33 GGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPP 67
Score = 28.5 bits (62), Expect = 3.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGY 26
GGGG G GG G G GG G+
Sbjct: 181 GGGGRGGGRGGGFRGGRGGGGGGF 204
>gi|56606061 translocase of inner mitochondrial membrane 22 homolog
[Homo sapiens]
Length = 194
Score = 29.3 bits (64), Expect = 1.8
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 87 GALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGLRGIARG 143
G +A + ++S +IE RG D N+V +G +TG GL+ A G
Sbjct: 122 GMSYAKNFAIVGAMFSCTECLIESYRGTSDWKNSVISGCITGGAIGFRAGLKAGAIG 178
>gi|10864053 myozenin 1 [Homo sapiens]
Length = 299
Score = 28.9 bits (63), Expect = 2.3
Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 4 GGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTG 38
G GSG TGG AG G GGA A AGV TG
Sbjct: 136 GSGSGAGGTGGPAGQAGRGGA----AGTAGVGETG 166
>gi|239755627 PREDICTED: similar to cag [Homo sapiens]
Length = 392
Score = 28.9 bits (63), Expect = 2.3
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 115 EDDLNTVAAGTMTGMLYKCTGGLRGIARGG-LTGLTLTSLYALYNNWEHMKGSLLQQ 170
EDD+NT + M+ C G ++G+ + +T + S+Y + K SL++Q
Sbjct: 297 EDDVNTAEKVPIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQ 353
>gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo
sapiens]
Length = 392
Score = 28.9 bits (63), Expect = 2.3
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 115 EDDLNTVAAGTMTGMLYKCTGGLRGIARGG-LTGLTLTSLYALYNNWEHMKGSLLQQ 170
EDD+NT + M+ C G ++G+ + +T + S+Y + K SL++Q
Sbjct: 297 EDDVNTAEKVPIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQ 353
>gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo
sapiens]
Length = 392
Score = 28.9 bits (63), Expect = 2.3
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 115 EDDLNTVAAGTMTGMLYKCTGGLRGIARGG-LTGLTLTSLYALYNNWEHMKGSLLQQ 170
EDD+NT + M+ C G ++G+ + +T + S+Y + K SL++Q
Sbjct: 297 EDDVNTAEKVPIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERLLRQKASLMRQ 353
>gi|62422577 neurobeachin [Homo sapiens]
Length = 2946
Score = 28.9 bits (63), Expect = 2.3
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 21/125 (16%)
Query: 3 GGGGSGNKTTG--GLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLV------ 54
GGGGSG TG G+ GA G+G +P +NP P N+ ++ V
Sbjct: 28 GGGGSGGGGTGGSGMGELRGASGSG-----SVMLPAGMINPSVPIRNIRMKFAVLIGLIQ 82
Query: 55 --QDTDEFILPTGAN-KTRGRFELAF-FTIGGC----CMTGALWANTLGSLALLYSAFGV 106
+ ++ I+ T N G F+L F I CMT L + A ++S F
Sbjct: 83 VGEVSNRDIVETVLNLLVGGEFDLEMNFIIQDAESITCMTELLEHCDVTCQAEIWSMFTA 142
Query: 107 IIEKT 111
I+ K+
Sbjct: 143 ILRKS 147
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 28.5 bits (62), Expect = 3.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAG 33
GGG G GG G FG+GG G+ G
Sbjct: 106 GGGFGGGGIGGGGFGGFGSGGGGFGGGGFGG 136
Score = 27.3 bits (59), Expect = 6.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 3 GGGGSGNKTTGGLAGFFGAGG 23
GGGG + GG G FGAGG
Sbjct: 40 GGGGGRFSSCGGGGGSFGAGG 60
Score = 27.3 bits (59), Expect = 6.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 3 GGGGSGNKTTGGLA-----GFFGAGGAGYSH 28
GGGG G+ +GG + G +G+GG G H
Sbjct: 545 GGGGRGSYGSGGSSYGSGGGSYGSGGGGGGH 575
Score = 26.9 bits (58), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GG GSG + G G +G+GG G
Sbjct: 523 GGYGSGGSSYGSGGGSYGSGGGG 545
>gi|222352127 sidekick 2 [Homo sapiens]
Length = 2172
Score = 28.5 bits (62), Expect = 3.0
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 101 YSAFGVIIEKTRGAEDDLNTVAAG---TMTGMLYKCTGG--LRGIARGGLTGLTLTSLYA 155
++ V+I AED +N + G +LY+ G LRGI G T LTS+Y+
Sbjct: 1513 HTTTSVLIRWQPPAEDKINGILLGFRIRYRELLYEGLRGFTLRGINNPGATWAELTSMYS 1572
Query: 156 LYN 158
+ N
Sbjct: 1573 MRN 1575
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 28.5 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTG 38
GGG G + L G FG G G+ A G +G
Sbjct: 74 GGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSG 109
Score = 28.5 bits (62), Expect = 3.0
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 3 GGGGSGNKTTGGLAGFFGA-GGAGYSHADLAG 33
GG GSG + GG G G+ GG+G SH +G
Sbjct: 560 GGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSG 591
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,648,977
Number of Sequences: 37866
Number of extensions: 292582
Number of successful extensions: 1866
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1361
Number of HSP's gapped (non-prelim): 453
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.