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Search of human proteins with 239743970
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743970 PREDICTED: hypothetical protein XP_002344248 [Homo
sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755215 PREDICTED: similar to hCG2022304 [Homo sapiens] 245 5e-66
gi|239743970 PREDICTED: hypothetical protein XP_002344248 [Homo ... 245 5e-66
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 34 0.028
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 34 0.028
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 34 0.028
gi|22035569 GC-rich sequence DNA-binding factor candidate isofor... 33 0.037
gi|22035565 GC-rich sequence DNA-binding factor candidate isofor... 33 0.037
gi|169217659 PREDICTED: similar to ectonucleotide pyrophosphatas... 33 0.063
gi|239754797 PREDICTED: hypothetical protein [Homo sapiens] 33 0.063
gi|169167316 PREDICTED: similar to ectonucleotide pyrophosphatas... 33 0.063
gi|239743415 PREDICTED: hypothetical protein [Homo sapiens] 33 0.063
gi|239753382 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo ... 32 0.11
gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo ... 32 0.11
gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens] 32 0.11
gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens] 32 0.11
gi|239749325 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239509122 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|11761629 fibrinogen, alpha polypeptide isoform alpha prepropr... 31 0.18
gi|4503689 fibrinogen, alpha polypeptide isoform alpha-E preprop... 31 0.18
gi|239754438 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo ... 31 0.24
gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo ... 31 0.24
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 31 0.24
gi|23238194 tumor necrosis factor receptor superfamily, member 1... 31 0.24
gi|145199237 transcription elongation factor B polypeptide 3 bin... 31 0.24
gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sap... 31 0.24
gi|239757743 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 30 0.31
gi|169201741 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
>gi|239755215 PREDICTED: similar to hCG2022304 [Homo sapiens]
Length = 117
Score = 245 bits (626), Expect = 5e-66
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MGLELGFSRLLSSGCTDFAHALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGME 60
MGLELGFSRLLSSGCTDFAHALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGME
Sbjct: 1 MGLELGFSRLLSSGCTDFAHALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGME 60
Query: 61 LGCPWAPSWAGAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGTRAGVAATPS 117
LGCPWAPSWAGAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGTRAGVAATPS
Sbjct: 61 LGCPWAPSWAGAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGTRAGVAATPS 117
>gi|239743970 PREDICTED: hypothetical protein XP_002344248 [Homo
sapiens]
Length = 117
Score = 245 bits (626), Expect = 5e-66
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MGLELGFSRLLSSGCTDFAHALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGME 60
MGLELGFSRLLSSGCTDFAHALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGME
Sbjct: 1 MGLELGFSRLLSSGCTDFAHALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGME 60
Query: 61 LGCPWAPSWAGAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGTRAGVAATPS 117
LGCPWAPSWAGAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGTRAGVAATPS
Sbjct: 61 LGCPWAPSWAGAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGTRAGVAATPS 117
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 33.9 bits (76), Expect = 0.028
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 20/102 (19%)
Query: 31 PGRRPG-GAAMLAESPSVPRL--------------GSGTRGAGME-LGCPWAPSWAGAHP 74
PG RPG +A + +P+ P+ G G+RG G + +G PS AG P
Sbjct: 124 PGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA--RPSRAGGQP 181
Query: 75 GRVVTGKKPRASPRRGGRGKDRTLPKSRTRPG-GTRAGVAAT 115
+ T ++ RA+PRR R R ++RPG GT A T
Sbjct: 182 PPL-TCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGT 222
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 33.9 bits (76), Expect = 0.028
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 20/102 (19%)
Query: 31 PGRRPG-GAAMLAESPSVPRL--------------GSGTRGAGME-LGCPWAPSWAGAHP 74
PG RPG +A + +P+ P+ G G+RG G + +G PS AG P
Sbjct: 124 PGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA--RPSRAGGQP 181
Query: 75 GRVVTGKKPRASPRRGGRGKDRTLPKSRTRPG-GTRAGVAAT 115
+ T ++ RA+PRR R R ++RPG GT A T
Sbjct: 182 PPL-TCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGT 222
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 33.9 bits (76), Expect = 0.028
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 20/102 (19%)
Query: 31 PGRRPG-GAAMLAESPSVPRL--------------GSGTRGAGME-LGCPWAPSWAGAHP 74
PG RPG +A + +P+ P+ G G+RG G + +G PS AG P
Sbjct: 124 PGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA--RPSRAGGQP 181
Query: 75 GRVVTGKKPRASPRRGGRGKDRTLPKSRTRPG-GTRAGVAAT 115
+ T ++ RA+PRR R R ++RPG GT A T
Sbjct: 182 PPL-TCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGT 222
>gi|22035569 GC-rich sequence DNA-binding factor candidate isoform
2 [Homo sapiens]
Length = 815
Score = 33.5 bits (75), Expect = 0.037
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 24 GDADTRDPG---RRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVTG 80
G + PG R PGG ++L PS P + T G G E G + GA PG G
Sbjct: 37 GTGEEAGPGGGDRAPGGESLLGPGPSPP--SALTPGLGAEAGGGFP---GGAEPG---NG 88
Query: 81 KKPRASPR 88
KPR PR
Sbjct: 89 LKPRKRPR 96
>gi|22035565 GC-rich sequence DNA-binding factor candidate isoform
1 [Homo sapiens]
Length = 917
Score = 33.5 bits (75), Expect = 0.037
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 24 GDADTRDPG---RRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVTG 80
G + PG R PGG ++L PS P + T G G E G + GA PG G
Sbjct: 37 GTGEEAGPGGGDRAPGGESLLGPGPSPP--SALTPGLGAEAGGGFP---GGAEPG---NG 88
Query: 81 KKPRASPR 88
KPR PR
Sbjct: 89 LKPRKRPR 96
>gi|169217659 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
Length = 542
Score = 32.7 bits (73), Expect = 0.063
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 31 PGRRPGGAAMLAESPSVPRLGSGTRG 56
PG RP G A +A +PS PR G G+ G
Sbjct: 493 PGPRPWGLARVARTPSAPRAGGGSWG 518
>gi|239754797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 32.7 bits (73), Expect = 0.063
Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 19/102 (18%)
Query: 32 GRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVT------------ 79
GR+ GG +P LG RGAG GA P VV
Sbjct: 33 GRQQGGPGH-GNVDHLPNLGRQPRGAGSRGASAPRAVRTGAAPEVVVQSGHRSHASKRRF 91
Query: 80 ---GKKP--RASPRRGGRGKDRTLPKSRTRPGGTRAGVAATP 116
G+ P R S RR G GK+ + P + PGG RAG+ P
Sbjct: 92 LEEGEAPARRLSERRRGGGKEESRPGTAAAPGG-RAGLYGGP 132
>gi|169167316 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
Length = 542
Score = 32.7 bits (73), Expect = 0.063
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 31 PGRRPGGAAMLAESPSVPRLGSGTRG 56
PG RP G A +A +PS PR G G+ G
Sbjct: 493 PGPRPWGLARVARTPSAPRAGGGSWG 518
>gi|239743415 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 32.7 bits (73), Expect = 0.063
Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 19/102 (18%)
Query: 32 GRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVT------------ 79
GR+ GG +P LG RGAG GA P VV
Sbjct: 33 GRQQGGPGH-GNVDHLPNLGRQPRGAGSRGASAPRAVRTGAAPEVVVQSGHRSHASKRRF 91
Query: 80 ---GKKP--RASPRRGGRGKDRTLPKSRTRPGGTRAGVAATP 116
G+ P R S RR G GK+ + P + PGG RAG+ P
Sbjct: 92 LEEGEAPARRLSERRRGGGKEESRPGTAAAPGG-RAGLYGGP 132
>gi|239753382 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 28 TRDPGRRP--------GGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGR 76
+R PG R GGAA+ SP+ P LG G G E C S A A P +
Sbjct: 260 SRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTEPACRGPRSLAAAFPAK 316
>gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo
sapiens]
Length = 331
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 28 TRDPGRRP--------GGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGR 76
+R PG R GGAA+ SP+ P LG G G E C S A A P +
Sbjct: 260 SRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTEPACRGPRSLAAAFPAK 316
>gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo
sapiens]
Length = 331
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 28 TRDPGRRP--------GGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGR 76
+R PG R GGAA+ SP+ P LG G G E C S A A P +
Sbjct: 260 SRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTEPACRGPRSLAAAFPAK 316
>gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens]
Length = 1318
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 36 GGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVTGK--KPRASPRRGG 91
GG A +VP LG+GT G+E +PS G G G+ P SPRRGG
Sbjct: 560 GGGLSAATGVTVPGLGTGTAALGLE-NFTLSPS-PGYPQGTPAAGQAWTPEPSPRRGG 615
>gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens]
Length = 1446
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 36 GGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVTGK--KPRASPRRGG 91
GG A +VP LG+GT G+E +PS G G G+ P SPRRGG
Sbjct: 560 GGGLSAATGVTVPGLGTGTAALGLE-NFTLSPS-PGYPQGTPAAGQAWTPEPSPRRGG 615
>gi|239749325 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 31.6 bits (70), Expect = 0.14
Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 19/98 (19%)
Query: 32 GRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVT------------ 79
GR+ GG +P LG RGAG GA P VV
Sbjct: 33 GRQQGGPGH-GNVDHLPNLGRQPRGAGSRGASAPRAVRTGAAPEVVVQSGHRSHASKRRF 91
Query: 80 ---GKKP--RASPRRGGRGKDRTLPKSRTRPGGTRAGV 112
G+ P R S RR G GK+ + P + PGG RAG+
Sbjct: 92 LEEGEAPARRLSERRRGGGKEESRPGTAAAPGG-RAGL 128
>gi|239509122 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 31.6 bits (70), Expect = 0.14
Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 19/98 (19%)
Query: 32 GRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVT------------ 79
GR+ GG +P LG RGAG GA P VV
Sbjct: 33 GRQQGGPGH-GNVDHLPNLGRQPRGAGSRGASAPRAVRTGAAPEVVVQSGHRSHASKRRF 91
Query: 80 ---GKKP--RASPRRGGRGKDRTLPKSRTRPGGTRAGV 112
G+ P R S RR G GK+ + P + PGG RAG+
Sbjct: 92 LEEGEAPARRLSERRRGGGKEESRPGTAAAPGG-RAGL 128
>gi|11761629 fibrinogen, alpha polypeptide isoform alpha
preproprotein [Homo sapiens]
Length = 644
Score = 31.2 bits (69), Expect = 0.18
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 21 ALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGA-HPGRVVT 79
ALT R RPGG + R GS + G G E P PS AG+ + G
Sbjct: 250 ALTDMPQMRMELERPGGN-------EITRGGSTSYGTGSETESPRNPSSAGSWNSGSSGP 302
Query: 80 GKKPRASPRRGGRGKDRTLPKSRTRPGGT 108
G +P G G T + PG T
Sbjct: 303 GSTGNRNPGSSGTGGTATWKPGSSGPGST 331
>gi|4503689 fibrinogen, alpha polypeptide isoform alpha-E
preproprotein [Homo sapiens]
Length = 866
Score = 31.2 bits (69), Expect = 0.18
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 21 ALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGA-HPGRVVT 79
ALT R RPGG + R GS + G G E P PS AG+ + G
Sbjct: 250 ALTDMPQMRMELERPGGN-------EITRGGSTSYGTGSETESPRNPSSAGSWNSGSSGP 302
Query: 80 GKKPRASPRRGGRGKDRTLPKSRTRPGGT 108
G +P G G T + PG T
Sbjct: 303 GSTGNRNPGSSGTGGTATWKPGSSGPGST 331
>gi|239754438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 709
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 51 GSGTRGAGMELGCPWAPSWAG-AHP-GRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGT 108
G G R LG WAG HP G + G P A+ RGG G + T P R G +
Sbjct: 80 GDGPRRLLPALGRSALGDWAGIGHPLGWGLLGGSPGAAGGRGGHGLEGTAPALPLRGGRS 139
Query: 109 RAGVAA 114
R + A
Sbjct: 140 RGWLFA 145
>gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo
sapiens]
Length = 709
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 51 GSGTRGAGMELGCPWAPSWAG-AHP-GRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGT 108
G G R LG WAG HP G + G P A+ RGG G + T P R G +
Sbjct: 80 GDGPRRLLPALGRSALGDWAGIGHPLGWGLLGGSPGAAGGRGGHGLEGTAPALPLRGGRS 139
Query: 109 RAGVAA 114
R + A
Sbjct: 140 RGWLFA 145
>gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo
sapiens]
Length = 709
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 51 GSGTRGAGMELGCPWAPSWAG-AHP-GRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGT 108
G G R LG WAG HP G + G P A+ RGG G + T P R G +
Sbjct: 80 GDGPRRLLPALGRSALGDWAGIGHPLGWGLLGGSPGAAGGRGGHGLEGTAPALPLRGGRS 139
Query: 109 RAGVAA 114
R + A
Sbjct: 140 RGWLFA 145
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 30.8 bits (68), Expect = 0.24
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 25 DADTRDPGR--RPG--GAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVTG 80
D PGR PG GA L SP +P G RG E G P P PG+V+ G
Sbjct: 1304 DGRPGSPGRAGNPGTPGAPGLKGSPGLP----GPRGDPGERG-PRGPKGEPGAPGQVIGG 1358
Query: 81 KKPRASPRRGGRG 93
+ P R+G G
Sbjct: 1359 EGPGLPGRKGDPG 1371
Score = 26.6 bits (57), Expect = 4.5
Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 25/88 (28%)
Query: 30 DPGRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPW----------------------AP 67
DPG P GA LA P+ P+ SG +G E G P P
Sbjct: 2184 DPG--PPGAPGLA-GPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGP 2240
Query: 68 SWAGAHPGRVVTGKKPRASPRRGGRGKD 95
+ PG+V KP A R G GKD
Sbjct: 2241 QGSPGLPGQVGETGKPGAPGRDGASGKD 2268
>gi|23238194 tumor necrosis factor receptor superfamily, member 18
isoform 2 precursor [Homo sapiens]
Length = 255
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Query: 30 DPGRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSW---AGAHPGRVVTGKKPRAS 86
+PGR PG + SP P+ R A PW W G+ A
Sbjct: 172 EPGRPPGPPTAASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAG 231
Query: 87 PRRGGRGKDRTLPKSRTRPGG 107
P R R P S P G
Sbjct: 232 PCRRERETQSWPPSSLAGPDG 252
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 62 GCPWAPSWAGAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRP 105
GCP P + TG P S + G +GKD+T K R RP
Sbjct: 369 GCP-----KEGKPKKKKTGAPPAPSCKDGAQGKDKTKDKGRGRP 407
>gi|122937187 glycosyltransferase 8 domain containing 4 [Homo
sapiens]
Length = 443
Score = 30.8 bits (68), Expect = 0.24
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 42 AESPSVP-RLGSGTRGAGMELGCPWAPSWA--GAHPGRVVTGKKPRASPRRGGRGKDRTL 98
AE P++P R S + + W A GA PG V + PR PR G RG R L
Sbjct: 30 AEPPALPARPASAPQRHPAPVPARWPGPGALPGASPG-VRRRRPPRPRPRAGRRGAAR-L 87
Query: 99 PKSRTRPGGTRAGVAATP 116
K RPG R+ A P
Sbjct: 88 EKLARRPGEPRSFQAVLP 105
>gi|239757743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 30.4 bits (67), Expect = 0.31
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 27 DTRDPGRRPGGAAMLAESPSVPRL--GSGTRGAGMELGCPWAPSWAGAHPG----RVVTG 80
D D GR G A PR G GT G+ E W G PG +++
Sbjct: 129 DQHDVGRTGNGQASSQGQEEGPRCPHGHGTEGSYRETA-----GWDGTPPGPGHLQILER 183
Query: 81 KK--PRASPRRGGRGKDRTLPKSRTRPGG 107
+ PR + R GRG+ R+R GG
Sbjct: 184 RSDPPRLAVRAQGRGRKSLGADQRSRAGG 212
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 62 GCPWAPSWA---------GAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGTRAGV 112
G PWAP+W A PG +P A P +RTL + GT AG
Sbjct: 255 GSPWAPAWTPRPTGPDLDTALPGTAEDALEPEAGPEDPAEA-ERTLDRRSDGTWGTEAGP 313
Query: 113 AATP 116
P
Sbjct: 314 GWAP 317
>gi|169201741 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 30.4 bits (67), Expect = 0.31
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 65 WAPSWAGAHPGRVVTGKKPRASPR--RGGRGKDRTLPKSRTRPG---GTRAGVAATPS 117
WAP G G + PR RGG G TLP+ G G AG A PS
Sbjct: 22 WAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATLPS 79
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,840,696
Number of Sequences: 37866
Number of extensions: 324826
Number of successful extensions: 1222
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 272
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.