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Search of human proteins with 239743889
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743889 PREDICTED: hypothetical protein XP_002342998 [Homo
sapiens]
(72 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743889 PREDICTED: hypothetical protein XP_002342998 [Homo ... 151 9e-38
gi|239755107 PREDICTED: hypothetical protein XP_002346216 [Homo ... 145 5e-36
gi|239743900 PREDICTED: hypothetical protein XP_002342969 [Homo ... 145 5e-36
gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo ... 33 0.063
gi|239757425 PREDICTED: hypothetical protein XP_002345433 [Homo ... 32 0.082
gi|239751942 PREDICTED: hypothetical protein [Homo sapiens] 32 0.082
gi|239746425 PREDICTED: hypothetical protein XP_002344219 [Homo ... 32 0.082
gi|239751010 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 31 0.24
gi|169210481 PREDICTED: hypothetical protein [Homo sapiens] 29 0.91
gi|169210045 PREDICTED: hypothetical protein [Homo sapiens] 29 0.91
gi|134142822 zinc finger protein 133 [Homo sapiens] 29 0.91
gi|27545332 zinc finger protein 133 [Homo sapiens] 29 0.91
gi|24415404 MDN1, midasin homolog [Homo sapiens] 29 0.91
gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo sapi... 28 1.2
gi|56090146 jumonji domain containing 8 [Homo sapiens] 28 1.2
gi|157785645 SPEG complex locus [Homo sapiens] 27 2.6
gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens] 27 2.6
gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens] 27 2.6
gi|239756662 PREDICTED: hypothetical protein [Homo sapiens] 27 3.4
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 27 3.4
gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo ... 27 3.4
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 27 3.4
gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo ... 27 3.4
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 27 3.4
gi|33589848 transferrin receptor 2 [Homo sapiens] 27 3.4
gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens] 27 4.5
gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|169210099 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
>gi|239743889 PREDICTED: hypothetical protein XP_002342998 [Homo
sapiens]
Length = 72
Score = 151 bits (382), Expect = 9e-38
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MLGAVEGGRLRAGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGARRRLLLG 60
MLGAVEGGRLRAGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGARRRLLLG
Sbjct: 1 MLGAVEGGRLRAGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGARRRLLLG 60
Query: 61 ASKTVPPRNERV 72
ASKTVPPRNERV
Sbjct: 61 ASKTVPPRNERV 72
>gi|239755107 PREDICTED: hypothetical protein XP_002346216 [Homo
sapiens]
Length = 72
Score = 145 bits (367), Expect = 5e-36
Identities = 70/72 (97%), Positives = 70/72 (97%)
Query: 1 MLGAVEGGRLRAGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGARRRLLLG 60
MLGAVEGGRLRAGTPPASRLL RRAGQAWSPPWEGPAGDGEMEGR TRALPGARRRLLLG
Sbjct: 1 MLGAVEGGRLRAGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLG 60
Query: 61 ASKTVPPRNERV 72
ASKTVPPRNERV
Sbjct: 61 ASKTVPPRNERV 72
>gi|239743900 PREDICTED: hypothetical protein XP_002342969 [Homo
sapiens]
Length = 72
Score = 145 bits (367), Expect = 5e-36
Identities = 70/72 (97%), Positives = 70/72 (97%)
Query: 1 MLGAVEGGRLRAGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGARRRLLLG 60
MLGAVEGGRLRAGTPPASRLL RRAGQAWSPPWEGPAGDGEMEGR TRALPGARRRLLLG
Sbjct: 1 MLGAVEGGRLRAGTPPASRLLHRRAGQAWSPPWEGPAGDGEMEGRLTRALPGARRRLLLG 60
Query: 61 ASKTVPPRNERV 72
ASKTVPPRNERV
Sbjct: 61 ASKTVPPRNERV 72
>gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo
sapiens]
Length = 187
Score = 32.7 bits (73), Expect = 0.063
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 2 LGAVEGGRLRAGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGARR 55
L V GG R+G P RR + W EGP G E+ G R+ G RR
Sbjct: 93 LAEVRGGARRSGRGP------RRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRR 140
Score = 26.9 bits (58), Expect = 3.4
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 2 LGAVEGGRLRAGTPPASRLLRRRAGQAWSPPWEGPAGDGE---MEGRCTRALPGARRRLL 58
L V GG R+G P RR + W EGP G E ++ R R L +
Sbjct: 124 LAEVRGGARRSGRGP------RRGPEVWPRSEEGPGGLAEVIIVKPRAMRGLCSVGQEAK 177
Query: 59 LGASKTV 65
G TV
Sbjct: 178 SGTGPTV 184
>gi|239757425 PREDICTED: hypothetical protein XP_002345433 [Homo
sapiens]
Length = 67
Score = 32.3 bits (72), Expect = 0.082
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 3 GAVEGGRLRAGTPPASRLLRR------RAGQAWSPPWEGPAGDGEMEGR 45
G+ R R G P A R R A A SPPW G A +G + GR
Sbjct: 18 GSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAEGRLGGR 66
>gi|239751942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 67
Score = 32.3 bits (72), Expect = 0.082
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 3 GAVEGGRLRAGTPPASRLLRR------RAGQAWSPPWEGPAGDGEMEGR 45
G+ R R G P A R R A A SPPW G A +G + GR
Sbjct: 18 GSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAEGRLGGR 66
>gi|239746425 PREDICTED: hypothetical protein XP_002344219 [Homo
sapiens]
Length = 67
Score = 32.3 bits (72), Expect = 0.082
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 3 GAVEGGRLRAGTPPASRLLRR------RAGQAWSPPWEGPAGDGEMEGR 45
G+ R R G P A R R A A SPPW G A +G + GR
Sbjct: 18 GSASAPRRRFGPPLALRAAARPAAPSPAAAAAASPPWRGEAAEGRLGGR 66
>gi|239751010 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 2 LGAVEGGRLRA-GTPPASRLLRRRAGQAWSPPWEGPAGDGEMEG 44
LG+ GG RA G PPA R R G+ SP W GP G G
Sbjct: 157 LGSNRGGGCRARGAPPARRTPARSPGRR-SPGWGGPCTPGGGSG 199
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 8 GRLRAGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGARRRLLL 59
G L+ G P A + L+ G+A +PP C AL G R +L+
Sbjct: 484 GSLQTGKPSAPKKLKLDVGEAMAPPSHRKGDSNANSDVCAAALRGLSRTILM 535
>gi|169210481 PREDICTED: hypothetical protein [Homo sapiens]
Length = 143
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 15 PPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGAR 54
P R R R G A PW+G AG G + G C A GAR
Sbjct: 6 PAPRRASRARRGLA---PWDG-AGAGAVTGPCPAAAQGAR 41
>gi|169210045 PREDICTED: hypothetical protein [Homo sapiens]
Length = 143
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 15 PPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGAR 54
P R R R G A PW+G AG G + G C A GAR
Sbjct: 6 PAPRRASRARRGLA---PWDG-AGAGAVTGPCPAAAQGAR 41
>gi|134142822 zinc finger protein 133 [Homo sapiens]
Length = 653
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 8 GRLRAGTP-PASRLLRRRA--GQAWSPPWEGPAGDGEMEGRCTRALPGARRRLLLGASKT 64
G ++ G P P + +++A G+ WS EGP G+G M L G ++ LGA
Sbjct: 114 GNIQPGDPGPGDQEKQQQASEGRPWSDQAEGPEGEGAM------PLFGRTKKRTLGAFSR 167
Query: 65 VPPR 68
P R
Sbjct: 168 PPQR 171
>gi|27545332 zinc finger protein 133 [Homo sapiens]
Length = 653
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 8 GRLRAGTP-PASRLLRRRA--GQAWSPPWEGPAGDGEMEGRCTRALPGARRRLLLGASKT 64
G ++ G P P + +++A G+ WS EGP G+G M L G ++ LGA
Sbjct: 114 GNIQPGDPGPGDQEKQQQASEGRPWSDQAEGPEGEGAM------PLFGRTKKRTLGAFSR 167
Query: 65 VPPR 68
P R
Sbjct: 168 PPQR 171
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 20 LLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGARRRL 57
L + AGQA P W A +EG R LP R+R+
Sbjct: 4027 LAQPAAGQATIPEWCQGAAPSGLEGELLRRLPKLRKRM 4064
>gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo
sapiens]
Length = 267
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 6 EGGRLR-AGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGARRRL 57
EG + R +G P + LL AG W P GPA G + PGA RL
Sbjct: 68 EGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPALAGALR------FPGAHGRL 114
Score = 25.8 bits (55), Expect = 7.7
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 8 GRLRAGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGARRRLLLGASKT 64
GRL A PP L + RAG P G G + CT LP + LG S T
Sbjct: 112 GRLCAPPPPGLGLGQGRAGAGLR-----PRGAGSLPLPCTARLPAPQ----LGTSST 159
>gi|56090146 jumonji domain containing 8 [Homo sapiens]
Length = 285
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/35 (54%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 6 EGGRLRAGTPPASRLLRRRAGQAWSPPWEGPAGDG 40
EGGRL A PASRLL A A + P G GDG
Sbjct: 17 EGGRLMA---PASRLLALWALAAVALPGSGAEGDG 48
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 27.3 bits (59), Expect = 2.6
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 6 EGGRLRAGTPPASRLLRRRAGQAWSPPWEGPAGDGEME--GRCTRALP--GARRRL 57
E G +R + S+ LRR P WE GDGE G R P RRRL
Sbjct: 2402 EPGLVRRLSLSLSQRLRRTPPAQRHPAWEARGGDGESSEGGSSARGSPVLAMRRRL 2457
>gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]
Length = 725
Score = 27.3 bits (59), Expect = 2.6
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 3 GAVEGGRLRAGTPPASRLLRRRAGQAWSPPWEGP--AGDGEMEGRCTRALPGARRRLLLG 60
G +E R R G P LLRR A +P GP A G + A +
Sbjct: 56 GGIERFRARGGLRPLLALLRRAAAAGSAPSQAGPGSAPSSAASGASSPAPASGPAPSAVS 115
Query: 61 ASKTVPP 67
+S PP
Sbjct: 116 SSSPTPP 122
>gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens]
Length = 935
Score = 27.3 bits (59), Expect = 2.6
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 3 GAVEGGRLRAGTPPASRLLRRRAGQAWSPPWEGP--AGDGEMEGRCTRALPGARRRLLLG 60
G +E R R G P LLRR A +P GP A G + A +
Sbjct: 56 GGIERFRARGGLRPLLALLRRAAAAGSAPSQAGPGSAPSSAASGASSPAPASGPAPSAVS 115
Query: 61 ASKTVPP 67
+S PP
Sbjct: 116 SSSPTPP 122
>gi|239756662 PREDICTED: hypothetical protein [Homo sapiens]
Length = 418
Score = 26.9 bits (58), Expect = 3.4
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 16 PASRLLRRRAGQAWSP-PWEGPAGDGEMEGRCTRALPGARRRLL 58
P LL R SP PW G A +G+ G C LPG R L
Sbjct: 40 PGRLLLHVRTTSVCSPLPWTGTATEGQSVGTC---LPGLFTRPL 80
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 26.9 bits (58), Expect = 3.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 11 RAGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRA 49
RAG A+R R+R G P EG G+G G RA
Sbjct: 280 RAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRA 318
>gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo
sapiens]
Length = 333
Score = 26.9 bits (58), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 23 RRAGQAWSPPWEGPAGDGEMEGRCTRALPGARR 55
RR + W EGP G E+ G R+ G RR
Sbjct: 234 RRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRR 266
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 26.9 bits (58), Expect = 3.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 11 RAGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRA 49
RAG A+R R+R G P EG G+G G RA
Sbjct: 374 RAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRA 412
>gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo
sapiens]
Length = 296
Score = 26.9 bits (58), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 23 RRAGQAWSPPWEGPAGDGEMEGRCTRALPGARR 55
RR + W EGP G E+ G R+ G RR
Sbjct: 197 RRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRR 229
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 26.9 bits (58), Expect = 3.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 11 RAGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRA 49
RAG A+R R+R G P EG G+G G RA
Sbjct: 374 RAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRA 412
>gi|33589848 transferrin receptor 2 [Homo sapiens]
Length = 801
Score = 26.9 bits (58), Expect = 3.4
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 17 ASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGARRRLLLGASKTVPPRN 69
ASRLLR+ G W+ G + G PG R RL++ +T P N
Sbjct: 364 ASRLLRKLKGPVAPQEWQ-----GSLLGSPYHLGPGPRLRLVVNNHRTSTPIN 411
>gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens]
Length = 4314
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 17 ASRLLRRRAGQAWSPPWEGPAGDGE-MEGRCTRAL 50
AS LL ++ AW WEGP + + G RAL
Sbjct: 4122 ASALLNQKCPLAWQSKWEGPEDPLQYLRGLVARAL 4156
>gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 26.6 bits (57), Expect = 4.5
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 3 GAVEGGRLRAGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGARRRLLLG 60
GA + A PP +RL+ A P G AG +EGR A P +R LL+G
Sbjct: 422 GAERTSPVGARPPPPARLVTNTA------PTLGGAGP-RLEGRGGAAPPAGKRGLLIG 472
>gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 591
Score = 26.6 bits (57), Expect = 4.5
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 3 GAVEGGRLRAGTPPASRLLRRRAGQAWSPPWEGPAGDGEMEGRCTRALPGARRRLLLG 60
GA + A PP +RL+ A P G AG +EGR A P +R LL+G
Sbjct: 512 GAERTSPVGARPPPPARLVTNTA------PTLGGAGP-RLEGRGGAAPPAGKRGLLIG 562
>gi|169210099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 413
Score = 26.6 bits (57), Expect = 4.5
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 15/64 (23%)
Query: 7 GGRLRAGTP-------PASRLLRRRAGQ----AWSP-PWEGPAGDGEMEGRCTRALPGAR 54
GGR G P PA+ R + G+ SP PW G A +G+ G C LPG
Sbjct: 15 GGRRGGGAPAPQCVRSPAALSRRHQPGRLLLHVCSPVPWTGTATEGQSVGTC---LPGQF 71
Query: 55 RRLL 58
R L
Sbjct: 72 TRPL 75
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,719,313
Number of Sequences: 37866
Number of extensions: 172309
Number of successful extensions: 658
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 52
length of query: 72
length of database: 18,247,518
effective HSP length: 45
effective length of query: 27
effective length of database: 16,543,548
effective search space: 446675796
effective search space used: 446675796
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.