Guide to the Human Genome
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Name: LOC100288067 Sequence: fasta or formatted (72aa) NCBI GI: 239743900
Description:

PREDICTED: hypothetical protein XP_002342969

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5          9           1
 C cysteine            0.0          0           0
 D aspartate           1.4          1           1
 E glutamate           6.9          5           1
 F phenylalanine       0.0          0           0
 G glycine            15.3         11           2
 H histidine           1.4          1           1
 I isoleucine          0.0          0           0
 K lysine              1.4          1           1
 L leucine            12.5          9           3
 M methionine          2.8          2           1
 N asparagine          1.4          1           1
 P proline            11.1          8           2
 Q glutamine           1.4          1           1
 R arginine           16.7         12           3
 S serine              4.2          3           1
 T threonine           4.2          3           1
 V valine              4.2          3           1
 W tryptophan          2.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342969 
LOC100291856          1.000   PREDICTED: hypothetical protein XP_002346216 
LOC100286931          0.960   PREDICTED: hypothetical protein XP_002342998 
LOC100291961          0.056   PREDICTED: hypothetical protein XP_002345135 
LOC100291996          0.056   PREDICTED: hypothetical protein XP_002345433 
LOC100289507          0.056   PREDICTED: hypothetical protein 
LOC100289507          0.056   PREDICTED: hypothetical protein XP_002344219 
LOC100129781          0.048   PREDICTED: hypothetical protein 
MDN1                  0.040   MDN1, midasin homolog 
ITGA10                0.032   integrin, alpha 10 precursor 
ZNF133                0.024   zinc finger protein 133 
ZNF133                0.024   zinc finger protein 133 
LOC100134152          0.024   PREDICTED: similar to synaptotagmin XV-b 
JMJD8                 0.024   jumonji domain containing 8 
DYNC2H1               0.024   dynein, cytoplasmic 2, heavy chain 1 
LOC100128881          0.024   PREDICTED: hypothetical protein 
LOC100128881          0.024   PREDICTED: similar to predicted protein 
FOXA1                 0.016   forkhead box A1 
LOC100293437          0.016   PREDICTED: hypothetical protein 
GREM1                 0.016   gremlin-1 precursor 
LOC100293834          0.016   PREDICTED: similar to hCG2022304 
LOC100291147          0.016   PREDICTED: hypothetical protein XP_002347883 
LOC100289560          0.016   PREDICTED: hypothetical protein XP_002344188 
LOC100289341          0.016   PREDICTED: hypothetical protein XP_002344248 
ENPP1                 0.008   ectonucleotide pyrophosphatase/phosphodiesterase 1 ...
CTAG2                 0.008   cancer/testis antigen 2 isoform LAGE-1b 
LOC100131098          0.008   PREDICTED: hypothetical protein 
LOC100291609          0.008   PREDICTED: hypothetical protein XP_002346061 
LOC100131098          0.008   PREDICTED: hypothetical protein 
LOC100291121          0.008   PREDICTED: hypothetical protein XP_002346953 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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