Guide to the Human Genome
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Name: LOC100286931 Sequence: fasta or formatted (72aa) NCBI GI: 239743889
Description:

PREDICTED: hypothetical protein XP_002342998

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5          9           1
 C cysteine            1.4          1           1
 D aspartate           1.4          1           1
 E glutamate           6.9          5           1
 F phenylalanine       0.0          0           0
 G glycine            15.3         11           2
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              1.4          1           1
 L leucine            11.1          8           3
 M methionine          2.8          2           1
 N asparagine          1.4          1           1
 P proline            11.1          8           2
 Q glutamine           1.4          1           1
 R arginine           18.1         13           3
 S serine              4.2          3           1
 T threonine           4.2          3           1
 V valine              4.2          3           1
 W tryptophan          2.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342998 
LOC100291856          0.952   PREDICTED: hypothetical protein XP_002346216 
LOC100288067          0.952   PREDICTED: hypothetical protein XP_002342969 
LOC100291961          0.063   PREDICTED: hypothetical protein XP_002345135 
LOC100291996          0.056   PREDICTED: hypothetical protein XP_002345433 
LOC100289507          0.056   PREDICTED: hypothetical protein 
LOC100289507          0.056   PREDICTED: hypothetical protein XP_002344219 
LOC100129781          0.048   PREDICTED: hypothetical protein 
PELP1                 0.048   proline, glutamic acid and leucine rich protein 1 [...
LOC100127930          0.032   PREDICTED: hypothetical protein 
LOC100127930          0.032   PREDICTED: hypothetical protein 
ZNF133                0.032   zinc finger protein 133 
ZNF133                0.032   zinc finger protein 133 
MDN1                  0.032   MDN1, midasin homolog 
LOC100134152          0.024   PREDICTED: similar to synaptotagmin XV-b 
JMJD8                 0.024   jumonji domain containing 8 
SPEG                  0.016   SPEG complex locus 
ARMC5                 0.016   armadillo repeat containing 5 isoform b 
ARMC5                 0.016   armadillo repeat containing 5 isoform a 
LOC100129697          0.016   PREDICTED: hypothetical protein 
LOC643355             0.016   PREDICTED: hypothetical protein 
LOC100291147          0.016   PREDICTED: hypothetical protein XP_002347883 
LOC643355             0.016   PREDICTED: hypothetical protein 
LOC100289560          0.016   PREDICTED: hypothetical protein XP_002344188 
LOC643355             0.016   PREDICTED: hypothetical protein 
TFR2                  0.016   transferrin receptor 2 
DYNC2H1               0.016   dynein, cytoplasmic 2, heavy chain 1 
LOC729575             0.016   PREDICTED: hypothetical protein 
LOC100288110          0.016   PREDICTED: hypothetical protein 
LOC100129697          0.016   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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