Guide to the Human Genome
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Name: LOC100129697 Sequence: fasta or formatted (418aa) NCBI GI: 239756662
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {413aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         23           3
 C cysteine            4.1         17           1
 D aspartate           1.9          8           1
 E glutamate           3.1         13           1
 F phenylalanine       2.4         10           1
 G glycine            10.8         45           3
 H histidine           6.5         27           1
 I isoleucine          1.0          4           1
 K lysine              0.0          0           0
 L leucine             8.1         34           3
 M methionine          0.2          1           1
 N asparagine          0.0          0           0
 P proline            13.9         58           2
 Q glutamine           3.1         13           1
 R arginine           10.3         43           2
 S serine             11.7         49           2
 T threonine           6.5         27           2
 V valine              7.9         33           1
 W tryptophan          2.9         12           1
 X unknown             0.2          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129697          0.957   PREDICTED: hypothetical protein 
BBC3                  0.018   BCL2 binding component 3 isoform 1 
WIPF1                 0.012   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.012   WAS/WASL interacting protein family, member 1 
LOC100292184          0.012   PREDICTED: hypothetical protein 
LOC100290372          0.011   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.011   PREDICTED: hypothetical protein XP_002342652 
SYNJ1                 0.011   synaptojanin 1 isoform d 
WASF1                 0.011   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.011   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.011   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.011   Wiskott-Aldrich syndrome protein family member 1 [Hom...
LOC100292124          0.011   PREDICTED: hypothetical protein XP_002346387 
LOC100291071          0.011   PREDICTED: hypothetical protein XP_002346951 
LOC100287198          0.011   PREDICTED: hypothetical protein XP_002342815 
LOC100287198          0.011   PREDICTED: hypothetical protein 
MLL5                  0.011   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.011   myeloid/lymphoid or mixed-lineage leukemia 5 
KIAA1539              0.011   hypothetical protein LOC80256 
AGAP2                 0.010   centaurin, gamma 1 isoform PIKE-L 
PLCH2                 0.010   phospholipase C, eta 2 
LOC653548             0.010   PREDICTED: double homeobox, 4-like 
DUX4                  0.010   double homeobox, 4 
PELP1                 0.010   proline, glutamic acid and leucine rich protein 1 [...
LOC728410             0.010   double homeobox, 4-like 
LOC653543             0.010   double homeobox, 4-like 
LOC653545             0.010   double homeobox, 4-like 
LOC653544             0.010   double homeobox, 4-like 
LOC440017             0.010   PREDICTED: similar to double homeobox, 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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