Guide to the Human Genome
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Name: C19orf34 Sequence: fasta or formatted (148aa) NCBI GI: 109452617
Description:

chromosome 19 open reading frame 34

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         15           2
 C cysteine            2.0          3           1
 D aspartate           3.4          5           1
 E glutamate           2.7          4           1
 F phenylalanine       1.4          2           1
 G glycine             7.4         11           2
 H histidine           1.4          2           1
 I isoleucine          2.0          3           1
 K lysine              4.7          7           1
 L leucine             7.4         11           2
 M methionine          1.4          2           1
 N asparagine          2.7          4           1
 P proline            12.8         19           2
 Q glutamine           3.4          5           1
 R arginine           15.5         23           3
 S serine             12.8         19           2
 T threonine           5.4          8           2
 V valine              2.0          3           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromosome 19 open reading frame 34 
SRRM1                 0.058   serine/arginine repetitive matrix 1 
SRRM2                 0.050   splicing coactivator subunit SRm300 
LMTK3                 0.043   lemur tyrosine kinase 3 
BSN                   0.043   bassoon protein 
FLJ22184              0.040   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.040   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.040   PREDICTED: hypothetical protein LOC80164 
SON                   0.032   SON DNA-binding protein isoform F 
SON                   0.032   SON DNA-binding protein isoform B 
TSC22D4               0.032   TSC22 domain family, member 4 
LOC100290023          0.029   PREDICTED: hypothetical protein XP_002348147 
LOC100286967          0.029   PREDICTED: hypothetical protein XP_002342247 
SH3BP1                0.029   SH3-domain binding protein 1 
FOSB                  0.025   FBJ murine osteosarcoma viral oncogene homolog B is...
CYTSB                 0.025   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.025   spectrin domain with coiled-coils 1 NSP5a3a 
CYTSB                 0.025   spectrin domain with coiled-coils 1 NSP5b3b 
CYTSB                 0.025   spectrin domain with coiled-coils 1 NSP5b3a 
PTOV1                 0.025   prostate tumor overexpressed 1 
FLJ37078              0.025   hypothetical protein LOC222183 
KIAA0368              0.022   KIAA0368 protein 
KIF26B                0.022   kinesin family member 26B 
LOC729580             0.022   PREDICTED: hypothetical protein 
LOC729580             0.022   PREDICTED: hypothetical protein 
LOC100287063          0.022   PREDICTED: hypothetical protein 
LOC729580             0.022   PREDICTED: hypothetical protein 
WEE1                  0.022   WEE1 tyrosine kinase isoform 1 
TOX                   0.022   thymus high mobility group box protein TOX 
CHD6                  0.022   chromodomain helicase DNA binding protein 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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