Guide to the Human Genome
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Name: LOC100132427 Sequence: fasta or formatted (185aa) NCBI GI: 239743815
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         19           1
 C cysteine            7.0         13           1
 D aspartate           1.1          2           1
 E glutamate           0.5          1           1
 F phenylalanine       2.2          4           1
 G glycine             5.4         10           1
 H histidine           2.2          4           1
 I isoleucine          1.6          3           1
 K lysine              0.0          0           0
 L leucine            21.6         40           3
 M methionine          2.2          4           1
 N asparagine          0.0          0           0
 P proline            24.3         45           2
 Q glutamine           0.0          0           0
 R arginine            2.2          4           1
 S serine              7.0         13           2
 T threonine           2.7          5           1
 V valine              1.6          3           1
 W tryptophan          7.0         13           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132351          0.988   PREDICTED: hypothetical protein 
LOC100289460          0.933   PREDICTED: hypothetical protein XP_002343919 
LOC100132670          0.913   PREDICTED: hypothetical protein 
LOC100132263          0.913   PREDICTED: hypothetical protein 
LOC100132790          0.913   PREDICTED: hypothetical protein 
LOC100132670          0.903   PREDICTED: hypothetical protein 
LOC100130655          0.142   PREDICTED: hypothetical protein 
FMN2                  0.067   formin 2 
SRCAP                 0.045   Snf2-related CBP activator protein 
PCDH15                0.042   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.042   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.042   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.042   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.042   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.042   protocadherin 15 isoform CD1-6 precursor 
PCDH15                0.042   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.042   protocadherin 15 isoform CD1-1 precursor 
TPRX1                 0.040   tetra-peptide repeat homeobox 
CASKIN2               0.040   cask-interacting protein 2 isoform b 
CASKIN2               0.040   cask-interacting protein 2 isoform a 
PTPN23                0.037   protein tyrosine phosphatase, non-receptor type 23 [...
PER1                  0.037   period 1 
EPN1                  0.035   epsin 1 isoform c 
EPN1                  0.035   epsin 1 isoform b 
EPN1                  0.035   epsin 1 isoform a 
NACA                  0.032   nascent polypeptide-associated complex alpha subuni...
MAPK1IP1L             0.032   MAPK-interacting and spindle-stabilizing protein [Ho...
WBP11                 0.032   WW domain binding protein 11 
SPHK2                 0.030   sphingosine kinase 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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