Guide to the Human Genome
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Name: LOC100132790 Sequence: fasta or formatted (181aa) NCBI GI: 239743746
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         20           1
 C cysteine            6.1         11           1
 D aspartate           0.6          1           1
 E glutamate           0.6          1           1
 F phenylalanine       2.2          4           1
 G glycine             5.5         10           1
 H histidine           1.7          3           1
 I isoleucine          1.7          3           1
 K lysine              0.6          1           1
 L leucine            21.5         39           3
 M methionine          1.7          3           1
 N asparagine          0.0          0           0
 P proline            24.3         44           2
 Q glutamine           0.0          0           0
 R arginine            1.1          2           1
 S serine              6.6         12           1
 T threonine           3.3          6           1
 V valine              2.2          4           1
 W tryptophan          7.7         14           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132670          1.000   PREDICTED: hypothetical protein 
LOC100132263          1.000   PREDICTED: hypothetical protein 
LOC100132670          0.962   PREDICTED: hypothetical protein 
LOC100132351          0.939   PREDICTED: hypothetical protein 
LOC100132427          0.936   PREDICTED: hypothetical protein 
LOC100289460          0.921   PREDICTED: hypothetical protein XP_002343919 
LOC100130655          0.151   PREDICTED: hypothetical protein 
FMN2                  0.061   formin 2 
SRCAP                 0.054   Snf2-related CBP activator protein 
MAPK1IP1L             0.038   MAPK-interacting and spindle-stabilizing protein [Ho...
PER1                  0.038   period 1 
EPN1                  0.036   epsin 1 isoform c 
EPN1                  0.036   epsin 1 isoform b 
EPN1                  0.036   epsin 1 isoform a 
NACA                  0.033   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.031   PREDICTED: hypothetical protein LOC80164 
PTPN23                0.031   protein tyrosine phosphatase, non-receptor type 23 [...
POU2AF1               0.028   POU class 2 associating factor 1 
DMRTC2                0.028   DMRT-like family C2 
MLXIPL                0.026   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.026   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.026   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.026   Williams Beuren syndrome chromosome region 14 isofor...
BCORL1                0.026   BCL6 co-repressor-like 1 
YLPM1                 0.026   YLP motif containing 1 
WBP11                 0.026   WW domain binding protein 11 
LOC100131165          0.023   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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